Wall clock time and date at job start Tue Mar 31 2020 20:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30722 * 126.27265 * 2 1 4 4 N 1.28646 * 110.34312 * 179.97438 * 3 2 1 5 5 C 1.32190 * 109.56337 * 0.02562 * 4 3 2 6 6 C 1.41052 * 133.25329 * 180.02562 * 5 4 3 7 7 C 1.35637 * 119.40848 * 179.97438 * 6 5 4 8 8 C 1.41827 * 119.59461 * 0.02562 * 7 6 5 9 9 C 1.47571 * 119.98173 * 179.97438 * 8 7 6 10 10 O 1.21604 * 120.00007 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99890 * 359.73030 * 9 8 7 12 12 C 1.39858 * 119.99768 * 175.75080 * 11 9 8 13 13 C 1.38979 * 120.03569 * 214.85858 * 12 11 9 14 14 C 1.38154 * 120.06315 * 179.72245 * 13 12 11 15 15 C 1.38179 * 120.13869 * 0.55722 * 14 13 12 16 16 C 1.38907 * 120.07244 * 359.72190 * 15 14 13 17 17 O 1.35750 * 120.03065 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99996 * 5.37039 * 17 16 15 19 19 H 1.07999 * 120.00290 * 354.96321 * 18 17 16 20 20 C 1.38661 * 120.00230 * 174.96321 * 18 17 16 21 21 N 1.31564 * 119.99364 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00197 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46787 * 60.00131 * 22 20 18 24 24 H 1.48493 * 109.46854 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46919 * 300.00070 * 22 20 18 26 26 C 1.38725 * 120.03542 * 35.13969 * 12 11 9 27 27 C 1.36513 * 120.03606 * 0.27715 * 8 7 6 28 28 N 1.35849 * 120.38082 * 359.43925 * 27 8 7 29 29 H 1.08997 * 109.47009 * 270.00310 * 1 2 3 30 30 H 1.08998 * 109.47165 * 30.00353 * 1 2 3 31 31 H 1.09003 * 109.47282 * 150.00073 * 1 2 3 32 32 H 1.08003 * 120.29722 * 359.97438 * 6 5 4 33 33 H 1.07996 * 120.20240 * 179.97438 * 7 6 5 34 34 H 0.96995 * 119.99716 * 355.75566 * 11 9 8 35 35 H 1.08000 * 119.96699 * 0.02562 * 13 12 11 36 36 H 1.07999 * 119.93344 * 180.28069 * 14 13 12 37 37 H 1.07997 * 119.96005 * 179.74189 * 15 14 13 38 38 H 0.97002 * 119.99288 * 180.02562 * 21 20 18 39 39 H 1.08007 * 120.07639 * 359.97438 * 26 12 11 40 40 H 1.08002 * 119.81140 * 179.70788 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5174 0.7008 0.0005 5 6 3.6012 -0.6184 0.0004 6 6 4.6877 -1.5179 0.0012 7 6 4.4473 -2.8528 0.0012 8 6 3.1094 -3.3235 -0.0001 9 6 2.8380 -4.7740 -0.0006 10 8 1.6910 -5.1780 -0.0023 11 7 3.8614 -5.6511 -0.0053 12 6 3.6066 -7.0234 0.0839 13 6 4.4850 -7.8505 0.7736 14 6 4.2309 -9.2053 0.8670 15 6 3.1095 -9.7439 0.2657 16 6 2.2307 -8.9233 -0.4301 17 8 1.1296 -9.4535 -1.0210 18 6 0.8873 -10.7616 -0.8021 19 1 1.5980 -11.3572 -0.2483 20 6 -0.2742 -11.3424 -1.2880 21 7 -1.1397 -10.6170 -1.9631 22 14 -0.6102 -13.1547 -0.9842 23 1 -0.6662 -13.4094 0.4777 24 1 -1.9078 -13.5279 -1.6023 25 1 0.4767 -13.9674 -1.5871 26 6 2.4799 -7.5612 -0.5209 27 6 2.0726 -2.4355 -0.0071 28 7 2.3131 -1.0984 -0.0014 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 5.7021 -1.1470 0.0018 33 1 5.2695 -3.5529 0.0015 34 1 4.7745 -5.3305 -0.0705 35 1 5.3645 -7.4331 1.2412 36 1 4.9125 -9.8455 1.4074 37 1 2.9158 -10.8040 0.3369 38 1 -1.9524 -11.0233 -2.3027 39 1 1.7979 -6.9212 -1.0610 40 1 1.0552 -2.7979 -0.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726142891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:12 Heat of formation + Delta-G solvation = 85.408639 kcal Electronic energy + Delta-G solvation = -27125.897579 eV Core-core repulsion = 23101.885877 eV Total energy + Delta-G solvation = -4024.011702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.98756 -40.64136 -38.97494 -38.05108 -36.61479 -34.99318 -34.23835 -32.38855 -32.27282 -31.21510 -29.58437 -28.60028 -27.84207 -25.59351 -25.11999 -23.99700 -22.61420 -22.03686 -21.53669 -20.69856 -18.73217 -18.52883 -17.59284 -17.51845 -17.11335 -16.85828 -15.88525 -15.35719 -15.28970 -15.14705 -15.06807 -14.46103 -14.30115 -13.96168 -13.86152 -13.66163 -13.59468 -13.10000 -12.96576 -12.74679 -12.58600 -12.46821 -12.05340 -11.82899 -11.66327 -11.55209 -11.34480 -11.05686 -10.94885 -10.88949 -10.52835 -10.13962 -9.97307 -9.87059 -9.32321 -8.87127 -8.52863 -7.83910 -7.28361 -6.47705 -4.07051 -0.02309 0.42674 1.69530 1.84421 2.17238 2.25793 2.61187 2.90190 3.10928 3.11615 3.15182 3.18606 3.54784 3.92696 3.96076 4.03892 4.15179 4.21936 4.29232 4.49559 4.79560 4.85608 5.01407 5.06147 5.19295 5.27328 5.33316 5.39401 5.49129 5.53354 5.57934 5.71438 5.77810 5.97787 6.08774 6.27406 6.32099 6.53092 6.72016 6.92326 6.98567 7.26771 7.37683 7.46440 7.65940 7.96424 8.03908 8.10721 8.97040 9.66732 10.69891 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.002322 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.472352 B =12057.346920 C =13421.017601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.154 3.846 3 N -0.249 5.249 4 N -0.286 5.286 5 C 0.197 3.803 6 C -0.077 4.077 7 C -0.069 4.069 8 C -0.149 4.149 9 C 0.562 3.438 10 O -0.501 6.501 11 N -0.656 5.656 12 C 0.170 3.830 13 C -0.233 4.233 14 C -0.058 4.058 15 C -0.242 4.242 16 C 0.166 3.834 17 O -0.172 6.172 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.185 4.185 27 C 0.145 3.855 28 N -0.395 5.395 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.406 0.594 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.271 0.729 39 H 0.134 0.866 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.839 14.760 4.561 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 N -0.088 5.088 4 N -0.130 5.130 5 C -0.052 4.052 6 C -0.098 4.098 7 C -0.094 4.094 8 C -0.156 4.156 9 C 0.348 3.652 10 O -0.376 6.376 11 N -0.301 5.301 12 C 0.078 3.922 13 C -0.254 4.254 14 C -0.077 4.077 15 C -0.262 4.262 16 C 0.111 3.889 17 O -0.074 6.074 18 C -0.469 4.469 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.206 4.206 27 C 0.019 3.981 28 N -0.076 5.076 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.243 0.757 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.920 16.246 4.291 19.024 hybrid contribution 0.075 -2.113 0.191 2.123 sum 8.995 14.133 4.481 17.342 Atomic orbital electron populations 1.20316 0.82550 1.05248 1.04636 1.25109 0.97203 0.80488 1.07997 1.74209 0.96549 1.23292 1.14780 1.74920 1.10919 1.05987 1.21224 1.22490 0.84947 0.92812 1.04937 1.20166 0.97403 0.90531 1.01742 1.21211 0.95678 0.95625 0.96854 1.19466 0.93277 0.93998 1.08908 1.17658 0.85501 0.84557 0.77475 1.90926 1.20505 1.78924 1.47198 1.43103 1.09494 1.05070 1.72450 1.17115 0.96439 0.80678 0.98005 1.20260 1.02587 0.94105 1.08451 1.20517 0.96036 0.93904 0.97211 1.21212 0.97625 1.00907 1.06478 1.19125 0.87787 0.91604 0.90431 1.83986 1.36406 1.26629 1.60422 1.21305 1.06248 0.82181 1.37186 0.88978 1.25314 0.94619 1.00412 0.96150 1.70044 1.09849 1.36423 1.33084 0.85771 0.78232 0.80402 0.78966 1.19453 1.20264 1.19465 1.20151 1.00433 0.93019 1.06999 1.21777 1.02296 0.79271 0.94750 1.43702 1.09201 1.06796 1.47893 0.89085 0.88069 0.89771 0.81789 0.83018 0.75720 0.87243 0.86902 0.85363 0.91902 0.84792 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.00 0.37 -0.06 16 2 C 0.15 1.63 8.14 -154.12 -1.25 0.38 16 3 N -0.25 -3.31 12.18 32.96 0.40 -2.90 16 4 N -0.29 -3.89 12.29 31.19 0.38 -3.51 16 5 C 0.20 2.22 7.92 -155.95 -1.23 0.99 16 6 C -0.08 -0.60 10.09 -39.45 -0.40 -1.00 16 7 C -0.07 -0.48 9.53 -39.14 -0.37 -0.86 16 8 C -0.15 -1.47 5.84 -105.34 -0.61 -2.08 16 9 C 0.56 7.49 7.60 -12.45 -0.09 7.40 16 10 O -0.50 -8.91 13.71 5.27 0.07 -8.84 16 11 N -0.66 -8.16 5.28 -10.81 -0.06 -8.21 16 12 C 0.17 2.88 6.29 -83.74 -0.53 2.35 16 13 C -0.23 -3.62 9.96 -39.34 -0.39 -4.01 16 14 C -0.06 -0.98 10.03 -39.63 -0.40 -1.38 16 15 C -0.24 -5.06 9.17 -39.36 -0.36 -5.42 16 16 C 0.17 3.96 6.64 -39.14 -0.26 3.70 16 17 O -0.17 -4.89 9.76 0.05 0.00 -4.89 16 18 C -0.39 -10.84 9.49 30.89 0.29 -10.55 16 19 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.11 13.67 55.48 0.76 -24.35 16 22 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.18 -3.96 8.64 -39.20 -0.34 -4.30 16 27 C 0.14 1.42 10.45 -16.40 -0.17 1.25 16 28 N -0.40 -4.20 2.94 -59.36 -0.17 -4.38 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.15 0.55 6.45 -52.49 -0.34 0.21 16 34 H 0.41 3.24 6.86 -40.82 -0.28 2.96 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.13 2.66 5.63 -52.49 -0.30 2.37 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 3.06 6.22 -52.48 -0.33 2.74 16 40 H 0.19 1.66 7.56 -52.49 -0.40 1.26 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -36.16 351.21 -7.77 -43.93 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -3.58 Total: 5.27 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -5.85 Total: -12.59 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.31 Total: -43.35 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.73 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.16 -7.77 -43.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726142891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.339 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds