Wall clock time and date at job start Tue Mar 31 2020 21:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47313 * 2 1 4 4 H 1.08993 * 109.58212 * 304.72636 * 3 2 1 5 5 C 1.53239 * 109.58555 * 184.30807 * 3 2 1 6 6 N 1.46371 * 109.48676 * 182.54679 * 5 3 2 7 7 C 1.34778 * 119.65090 * 245.11048 * 6 5 3 8 8 O 1.21366 * 119.99868 * 349.93075 * 7 6 5 9 9 C 1.49304 * 120.00174 * 169.91994 * 7 6 5 10 10 O 1.21402 * 120.00315 * 352.94064 * 9 7 6 11 11 N 1.34784 * 119.99997 * 172.93020 * 9 7 6 12 12 C 1.40293 * 120.00064 * 180.02562 * 11 9 7 13 13 C 1.40718 * 126.09907 * 359.69653 * 12 11 9 14 14 N 1.30876 * 108.37496 * 179.81928 * 13 12 11 15 15 N 1.40067 * 108.43492 * 0.43513 * 14 13 12 16 16 C 1.37291 * 126.05317 * 179.69771 * 15 14 13 17 17 H 1.08003 * 119.99664 * 180.02562 * 16 15 14 18 18 C 1.39007 * 120.00411 * 0.03130 * 16 15 14 19 19 N 1.31282 * 119.99802 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00112 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47258 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46886 * 119.99610 * 20 18 16 23 23 H 1.48498 * 109.47306 * 239.99646 * 20 18 16 24 24 C 1.35783 * 126.09752 * 180.02562 * 12 11 9 25 25 C 1.46380 * 120.70663 * 65.09942 * 6 5 3 26 26 C 1.53244 * 109.48270 * 294.90497 * 25 6 5 27 27 S 1.81735 * 108.79738 * 57.65642 * 26 25 6 28 28 H 1.09000 * 109.47224 * 299.99896 * 1 2 3 29 29 H 1.08995 * 109.47015 * 60.00027 * 1 2 3 30 30 H 1.08997 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47279 * 239.99345 * 2 1 3 32 32 H 1.09008 * 109.46764 * 120.00169 * 2 1 3 33 33 H 1.08997 * 109.46981 * 302.55741 * 5 3 2 34 34 H 1.09009 * 109.46299 * 62.54274 * 5 3 2 35 35 H 0.97002 * 119.99474 * 0.02562 * 11 9 7 36 36 H 1.07999 * 125.81462 * 359.96868 * 13 12 11 37 37 H 0.97003 * 119.99885 * 180.02562 * 19 18 16 38 38 H 1.08001 * 126.25215 * 359.96800 * 24 12 11 39 39 H 1.08997 * 109.46953 * 174.90504 * 25 6 5 40 40 H 1.08994 * 109.46885 * 54.90419 * 25 6 5 41 41 H 1.09005 * 109.58208 * 177.45306 * 26 25 6 42 42 H 1.09001 * 109.58237 * 297.85846 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6103 1.9819 -0.8440 5 6 3.5686 1.4468 -0.1085 6 7 4.0585 2.8247 -0.0472 7 6 4.6696 3.3635 -1.1208 8 8 4.9755 2.6601 -2.0614 9 6 4.9702 4.8256 -1.1532 10 8 4.5523 5.5509 -0.2740 11 7 5.7058 5.3403 -2.1586 12 6 5.9887 6.7140 -2.1888 13 6 5.5667 7.6684 -1.2446 14 7 6.0278 8.8385 -1.6064 15 7 6.7508 8.6813 -2.7957 16 6 7.3842 9.6792 -3.4942 17 1 7.9160 9.4469 -4.4051 18 6 7.3412 10.9884 -3.0291 19 7 6.6944 11.2708 -1.9221 20 14 8.2037 12.3460 -3.9791 21 1 8.8560 11.7705 -5.1826 22 1 7.2094 13.3675 -4.3952 23 1 9.2317 12.9792 -3.1145 24 6 6.7132 7.3609 -3.1376 25 6 3.8916 3.6240 1.1677 26 6 2.3994 3.8650 1.4200 27 16 1.5608 2.2580 1.5519 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.9929 0.8733 0.7156 34 1 3.8668 0.9969 -1.0555 35 1 6.0395 4.7607 -2.8612 36 1 4.9668 7.4687 -0.3691 37 1 6.6641 12.1845 -1.5977 38 1 7.1759 6.9122 -4.0041 39 1 4.3984 4.5812 1.0453 40 1 4.3218 3.0908 2.0154 41 1 2.2710 4.4214 2.3485 42 1 1.9754 4.4314 0.5908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746422647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:06 Heat of formation + Delta-G solvation = 33.444569 kcal Electronic energy + Delta-G solvation = -26707.128068 eV Core-core repulsion = 22816.306987 eV Total energy + Delta-G solvation = -3890.821082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94086 -39.69989 -38.22285 -37.07058 -35.26717 -34.28379 -33.25866 -30.98088 -30.41394 -29.63505 -28.12355 -25.75506 -24.66374 -23.94712 -22.44888 -21.75375 -21.14370 -19.85704 -19.59494 -17.90010 -17.57392 -17.03606 -16.53274 -15.84610 -15.60974 -15.44579 -15.24263 -15.11853 -14.78042 -14.37819 -14.18814 -13.85297 -13.78367 -13.37707 -13.20713 -13.13605 -13.01659 -12.61055 -12.14982 -11.93204 -11.80221 -11.70061 -11.53844 -11.39380 -11.35592 -11.31226 -10.93731 -10.89227 -10.57095 -10.39342 -9.95570 -9.32221 -9.16368 -8.98756 -8.83437 -8.21226 -7.82744 -6.87806 -6.67219 -4.34901 1.44468 1.49857 2.32200 2.36447 2.86777 2.99986 3.05972 3.16487 3.52906 3.60233 3.77915 4.26063 4.29685 4.39227 4.48426 4.72162 4.76746 4.84071 4.91749 4.96382 4.97727 5.15009 5.24497 5.30686 5.39083 5.48676 5.62952 5.73906 5.78393 5.85306 5.97462 6.10120 6.17529 6.26125 6.64211 6.81196 6.87356 6.94204 7.09053 7.55811 7.74107 7.96048 8.09098 8.35924 8.60082 9.23131 9.51488 10.28473 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002264 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.182005 B =12363.265754 C =12882.720711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.066 4.066 4 H 0.091 0.909 5 C 0.110 3.890 6 N -0.591 5.591 7 C 0.516 3.484 8 O -0.524 6.524 9 C 0.483 3.517 10 O -0.513 6.513 11 N -0.575 5.575 12 C -0.074 4.074 13 C -0.024 4.024 14 N -0.260 5.260 15 N -0.137 5.137 16 C -0.321 4.321 17 H 0.119 0.881 18 C 0.046 3.954 19 N -0.766 5.766 20 Si 0.937 3.063 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.273 1.273 24 C -0.076 4.076 25 C 0.064 3.936 26 C -0.090 4.090 27 S -0.264 6.264 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.410 0.590 36 H 0.178 0.822 37 H 0.276 0.724 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 -17.487 3.852 19.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.195 4.195 4 H 0.109 0.891 5 C -0.014 4.014 6 N -0.324 5.324 7 C 0.300 3.700 8 O -0.399 6.399 9 C 0.265 3.735 10 O -0.393 6.393 11 N -0.216 5.216 12 C -0.180 4.180 13 C -0.200 4.200 14 N -0.091 5.091 15 N 0.097 4.903 16 C -0.453 4.453 17 H 0.137 0.863 18 C -0.172 4.172 19 N -0.392 5.392 20 Si 0.760 3.240 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.228 4.228 25 C -0.059 4.059 26 C -0.239 4.239 27 S -0.038 6.038 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.245 0.755 36 H 0.195 0.805 37 H 0.087 0.913 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.513 -16.286 5.226 18.681 hybrid contribution 1.079 -0.187 -1.903 2.196 sum -6.434 -16.472 3.323 17.994 Atomic orbital electron populations 1.21798 0.94726 1.01834 1.02736 1.21331 0.96959 0.92615 1.03139 1.23675 0.98077 1.00029 0.97756 0.89102 1.21826 0.91770 0.82771 1.05063 1.47722 1.57137 1.13703 1.13871 1.20333 0.78266 0.88867 0.82561 1.90724 1.51061 1.62320 1.35820 1.19602 0.82136 0.87917 0.83851 1.90340 1.52883 1.59783 1.36320 1.42184 1.47493 1.07687 1.24277 1.17245 1.15263 0.82108 1.03356 1.24146 1.04941 0.89558 1.01307 1.78280 1.13451 1.19049 0.98315 1.44589 1.28290 1.03537 1.13877 1.19994 1.31910 0.85948 1.07458 0.86324 1.25681 0.96393 0.98966 0.96135 1.70210 1.31256 1.20660 1.17075 0.85729 0.79031 0.79781 0.79444 1.18586 1.19813 1.19817 1.21311 1.12117 0.86123 1.03247 1.23028 0.96129 1.00969 0.85813 1.23831 0.97653 0.95613 1.06805 1.86781 1.69450 1.18683 1.28838 0.91611 0.92552 0.92395 0.90375 0.90722 0.89606 0.87709 0.75495 0.80493 0.91324 0.83318 0.82162 0.90538 0.86532 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.74 37.16 0.36 -0.77 16 2 C -0.10 -0.75 5.42 -26.73 -0.14 -0.90 16 3 C -0.07 -0.62 2.76 -26.61 -0.07 -0.70 16 4 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.11 1.11 5.52 -3.99 -0.02 1.09 16 6 N -0.59 -7.28 2.79 -174.16 -0.49 -7.76 16 7 C 0.52 7.64 7.68 -11.65 -0.09 7.55 16 8 O -0.52 -8.37 15.83 5.48 0.09 -8.28 16 9 C 0.48 8.18 7.67 -11.65 -0.09 8.09 16 10 O -0.51 -9.27 10.29 5.45 0.06 -9.21 16 11 N -0.58 -10.27 5.45 -10.46 -0.06 -10.33 16 12 C -0.07 -1.62 6.90 -83.93 -0.58 -2.20 16 13 C -0.02 -0.58 10.84 -17.02 -0.18 -0.77 16 14 N -0.26 -7.22 10.39 30.81 0.32 -6.90 16 15 N -0.14 -3.60 3.73 -11.40 -0.04 -3.65 16 16 C -0.32 -8.18 10.25 -14.82 -0.15 -8.33 16 17 H 0.12 2.70 7.83 -52.48 -0.41 2.29 16 18 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 19 N -0.77 -20.63 11.81 55.50 0.66 -19.98 16 20 Si 0.94 18.29 29.55 -169.99 -5.02 13.27 16 21 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.08 -1.73 11.50 -16.38 -0.19 -1.92 16 25 C 0.06 0.73 5.76 -3.98 -0.02 0.71 16 26 C -0.09 -0.98 6.67 37.28 0.25 -0.73 16 27 S -0.26 -2.77 20.48 -107.50 -2.20 -4.98 16 28 H 0.06 0.55 7.14 -51.93 -0.37 0.18 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.10 6.90 -51.92 -0.36 0.74 16 35 H 0.41 6.34 8.31 -40.82 -0.34 6.00 16 36 H 0.18 4.15 5.92 -52.49 -0.31 3.84 16 37 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 39 H 0.16 2.18 4.18 -55.50 -0.23 1.95 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.12 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 357.78 15.07 5.39 5.39 Total: -1.00 -30.21 357.78 -7.72 -37.93 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -5.38 Total: 12.32 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.03 Total: 2.17 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.39 Total: -48.61 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.14 Total: -17.49 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.20 Total: -4.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.21 -7.72 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746422647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.376 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds