Wall clock time and date at job start Tue Mar 31 2020 21:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47313 * 2 1 4 4 H 1.08993 * 109.58212 * 304.72636 * 3 2 1 5 5 C 1.53239 * 109.58555 * 184.30807 * 3 2 1 6 6 N 1.46371 * 109.48676 * 182.54679 * 5 3 2 7 7 C 1.34778 * 119.65090 * 245.11048 * 6 5 3 8 8 O 1.21366 * 119.99868 * 349.93075 * 7 6 5 9 9 C 1.49304 * 120.00174 * 169.91994 * 7 6 5 10 10 O 1.21402 * 120.00315 * 352.94064 * 9 7 6 11 11 N 1.34784 * 119.99997 * 172.93020 * 9 7 6 12 12 C 1.40293 * 120.00064 * 180.02562 * 11 9 7 13 13 C 1.40718 * 126.09907 * 359.69653 * 12 11 9 14 14 N 1.30876 * 108.37496 * 179.81928 * 13 12 11 15 15 N 1.40067 * 108.43492 * 0.43513 * 14 13 12 16 16 C 1.37291 * 126.05317 * 179.69771 * 15 14 13 17 17 H 1.08003 * 119.99664 * 180.02562 * 16 15 14 18 18 C 1.39007 * 120.00411 * 0.03130 * 16 15 14 19 19 N 1.31282 * 119.99802 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00112 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47258 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46886 * 119.99610 * 20 18 16 23 23 H 1.48498 * 109.47306 * 239.99646 * 20 18 16 24 24 C 1.35783 * 126.09752 * 180.02562 * 12 11 9 25 25 C 1.46380 * 120.70663 * 65.09942 * 6 5 3 26 26 C 1.53244 * 109.48270 * 294.90497 * 25 6 5 27 27 S 1.81735 * 108.79738 * 57.65642 * 26 25 6 28 28 H 1.09000 * 109.47224 * 299.99896 * 1 2 3 29 29 H 1.08995 * 109.47015 * 60.00027 * 1 2 3 30 30 H 1.08997 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47279 * 239.99345 * 2 1 3 32 32 H 1.09008 * 109.46764 * 120.00169 * 2 1 3 33 33 H 1.08997 * 109.46981 * 302.55741 * 5 3 2 34 34 H 1.09009 * 109.46299 * 62.54274 * 5 3 2 35 35 H 0.97002 * 119.99474 * 0.02562 * 11 9 7 36 36 H 1.07999 * 125.81462 * 359.96868 * 13 12 11 37 37 H 0.97003 * 119.99885 * 180.02562 * 19 18 16 38 38 H 1.08001 * 126.25215 * 359.96800 * 24 12 11 39 39 H 1.08997 * 109.46953 * 174.90504 * 25 6 5 40 40 H 1.08994 * 109.46885 * 54.90419 * 25 6 5 41 41 H 1.09005 * 109.58208 * 177.45306 * 26 25 6 42 42 H 1.09001 * 109.58237 * 297.85846 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6103 1.9819 -0.8440 5 6 3.5686 1.4468 -0.1085 6 7 4.0585 2.8247 -0.0472 7 6 4.6696 3.3635 -1.1208 8 8 4.9755 2.6601 -2.0614 9 6 4.9702 4.8256 -1.1532 10 8 4.5523 5.5509 -0.2740 11 7 5.7058 5.3403 -2.1586 12 6 5.9887 6.7140 -2.1888 13 6 5.5667 7.6684 -1.2446 14 7 6.0278 8.8385 -1.6064 15 7 6.7508 8.6813 -2.7957 16 6 7.3842 9.6792 -3.4942 17 1 7.9160 9.4469 -4.4051 18 6 7.3412 10.9884 -3.0291 19 7 6.6944 11.2708 -1.9221 20 14 8.2037 12.3460 -3.9791 21 1 8.8560 11.7705 -5.1826 22 1 7.2094 13.3675 -4.3952 23 1 9.2317 12.9792 -3.1145 24 6 6.7132 7.3609 -3.1376 25 6 3.8916 3.6240 1.1677 26 6 2.3994 3.8650 1.4200 27 16 1.5608 2.2580 1.5519 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.9929 0.8733 0.7156 34 1 3.8668 0.9969 -1.0555 35 1 6.0395 4.7607 -2.8612 36 1 4.9668 7.4687 -0.3691 37 1 6.6641 12.1845 -1.5977 38 1 7.1759 6.9122 -4.0041 39 1 4.3984 4.5812 1.0453 40 1 4.3218 3.0908 2.0154 41 1 2.2710 4.4214 2.3485 42 1 1.9754 4.4314 0.5908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746422647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:06 Heat of formation + Delta-G solvation = 14.462864 kcal Electronic energy + Delta-G solvation = -26707.951177 eV Core-core repulsion = 22816.306987 eV Total energy + Delta-G solvation = -3891.644190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28800 -41.37601 -39.62709 -38.13571 -36.30468 -35.63967 -34.96862 -32.30595 -31.88918 -30.56239 -29.82286 -27.29830 -26.04092 -24.91190 -23.61828 -22.89687 -22.45250 -21.40420 -21.09609 -19.47618 -18.87270 -18.21723 -17.55851 -17.46150 -17.07699 -16.64492 -16.56699 -16.07741 -15.90491 -15.71913 -15.47793 -15.22410 -15.00628 -14.83359 -14.54079 -14.15444 -14.03400 -13.59982 -13.51550 -13.31549 -12.98894 -12.94805 -12.91062 -12.64987 -12.46225 -12.25488 -12.06865 -12.03534 -11.99227 -11.71287 -11.09623 -10.88320 -10.85102 -10.19627 -10.14606 -10.10987 -8.70524 -8.62462 -8.49915 -6.27293 0.14693 0.66444 1.17021 1.27112 1.41352 1.47188 1.59417 1.68761 1.96170 2.08672 2.35276 2.49069 2.80151 3.06867 3.32610 3.50023 3.73754 3.88178 3.98864 4.05220 4.29675 4.34456 4.38418 4.50196 4.51814 4.52809 4.69235 4.75722 4.81863 4.86638 4.93793 4.97527 5.08343 5.11727 5.18936 5.25827 5.39596 5.41816 5.78134 5.91022 6.16797 6.34016 6.60809 6.69452 7.00928 7.40044 7.62383 8.49306 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002264 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.182005 B =12363.265754 C =12882.720711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.061 4.061 4 H 0.077 0.923 5 C 0.109 3.891 6 N -0.582 5.582 7 C 0.523 3.477 8 O -0.534 6.534 9 C 0.486 3.514 10 O -0.523 6.523 11 N -0.577 5.577 12 C -0.058 4.058 13 C -0.043 4.043 14 N -0.308 5.308 15 N -0.164 5.164 16 C -0.352 4.352 17 H 0.141 0.859 18 C -0.005 4.005 19 N -0.820 5.820 20 Si 1.018 2.982 21 H -0.242 1.242 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.074 4.074 25 C 0.066 3.934 26 C -0.089 4.089 27 S -0.265 6.265 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.423 0.577 36 H 0.180 0.820 37 H 0.278 0.722 38 H 0.186 0.814 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -19.640 3.169 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.136 4.136 3 C -0.190 4.190 4 H 0.095 0.905 5 C -0.014 4.014 6 N -0.315 5.315 7 C 0.306 3.694 8 O -0.411 6.411 9 C 0.268 3.732 10 O -0.403 6.403 11 N -0.221 5.221 12 C -0.164 4.164 13 C -0.219 4.219 14 N -0.139 5.139 15 N 0.069 4.931 16 C -0.483 4.483 17 H 0.158 0.842 18 C -0.217 4.217 19 N -0.447 5.447 20 Si 0.837 3.163 21 H -0.165 1.165 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.225 4.225 25 C -0.057 4.057 26 C -0.237 4.237 27 S -0.038 6.038 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.260 0.740 36 H 0.197 0.803 37 H 0.088 0.912 38 H 0.203 0.797 39 H 0.158 0.842 40 H 0.116 0.884 41 H 0.147 0.853 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.229 -18.494 4.556 20.373 hybrid contribution 0.860 0.244 -1.585 1.820 sum -6.369 -18.250 2.971 19.556 Atomic orbital electron populations 1.21784 0.94741 1.02549 1.01911 1.21356 0.96865 0.91083 1.04296 1.23712 0.97536 1.01197 0.96582 0.90468 1.22045 0.92119 0.81234 1.06005 1.47812 1.55881 1.14649 1.13143 1.19808 0.78940 0.87468 0.83221 1.90728 1.51971 1.62020 1.36383 1.20153 0.80902 0.89128 0.82969 1.90376 1.52656 1.60708 1.36541 1.42114 1.48490 1.06133 1.25378 1.17257 1.13568 0.83655 1.01926 1.24296 1.05533 0.89897 1.02161 1.78171 1.14977 1.20862 0.99910 1.44841 1.29328 1.04932 1.14038 1.20670 1.32637 0.86551 1.08442 0.84171 1.26856 0.96612 1.01404 0.96820 1.70371 1.33654 1.21308 1.19412 0.84544 0.77537 0.75887 0.78323 1.16471 1.19773 1.19727 1.22005 1.11254 0.85199 1.04064 1.22964 0.96458 1.00252 0.86044 1.23762 0.97078 0.96166 1.06744 1.86830 1.69527 1.18050 1.29372 0.92798 0.92997 0.90943 0.88840 0.89858 0.87554 0.87590 0.73961 0.80317 0.91243 0.79651 0.84166 0.88398 0.85324 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.74 71.98 0.70 -1.23 16 2 C -0.10 -1.18 5.42 30.59 0.17 -1.01 16 3 C -0.06 -1.03 2.76 30.67 0.08 -0.94 16 4 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 5 C 0.11 1.93 5.52 86.48 0.48 2.41 16 6 N -0.58 -13.34 2.79 -823.26 -2.30 -15.63 16 7 C 0.52 14.76 7.68 87.22 0.67 15.43 16 8 O -0.53 -16.11 15.83 -3.30 -0.05 -16.16 16 9 C 0.49 16.18 7.67 87.22 0.67 16.85 16 10 O -0.52 -19.00 10.29 -3.41 -0.04 -19.04 16 11 N -0.58 -20.16 5.45 -305.33 -1.66 -21.82 16 12 C -0.06 -2.54 6.90 37.82 0.26 -2.28 16 13 C -0.04 -2.19 10.84 85.44 0.93 -1.27 16 14 N -0.31 -17.71 10.39 -56.44 -0.59 -18.29 16 15 N -0.16 -8.78 3.73 -189.98 -0.71 -9.49 16 16 C -0.35 -18.10 10.25 84.02 0.86 -17.24 16 17 H 0.14 6.27 7.83 -2.91 -0.02 6.25 16 18 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 19 N -0.82 -45.84 11.81 21.66 0.26 -45.59 16 20 Si 1.02 37.56 29.55 68.60 2.03 39.59 16 21 H -0.24 -8.02 7.11 99.48 0.71 -7.32 16 22 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 24 C -0.07 -3.34 11.50 83.41 0.96 -2.38 16 25 C 0.07 1.42 5.76 86.48 0.50 1.92 16 26 C -0.09 -1.85 6.67 72.06 0.48 -1.37 16 27 S -0.26 -5.11 20.48 -56.49 -1.16 -6.26 16 28 H 0.05 0.81 7.14 -2.39 -0.02 0.80 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.93 6.90 -2.38 -0.02 1.92 16 35 H 0.42 12.46 8.31 -92.71 -0.77 11.69 16 36 H 0.18 8.73 5.92 -2.91 -0.02 8.71 16 37 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 38 H 0.19 6.67 8.06 -2.91 -0.02 6.65 16 39 H 0.14 3.75 4.18 -58.98 -0.25 3.51 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -67.41 357.78 3.07 -64.34 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: 0.06 Total: 39.23 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 7.22 Total: 9.13 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -5.00 Total: -110.82 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.09 Total: -35.20 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -1.16 Total: -6.26 kcal Total: -67.41 3.07 -64.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746422647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.801 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds