Wall clock time and date at job start Tue Mar 31 2020 21:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47007 * 2 1 4 4 H 1.09004 * 109.57861 * 55.27675 * 3 2 1 5 5 C 1.53242 * 109.69617 * 175.61848 * 3 2 1 6 6 N 1.46376 * 109.48955 * 177.51974 * 5 3 2 7 7 C 1.34777 * 119.64709 * 114.91238 * 6 5 3 8 8 O 1.21363 * 119.99950 * 354.52838 * 7 6 5 9 9 C 1.49304 * 119.99629 * 174.52990 * 7 6 5 10 10 O 1.21399 * 120.00656 * 6.18093 * 9 7 6 11 11 N 1.34777 * 119.99785 * 186.18164 * 9 7 6 12 12 C 1.40297 * 120.00156 * 179.97438 * 11 9 7 13 13 C 1.40718 * 126.09851 * 359.69362 * 12 11 9 14 14 N 1.30875 * 108.37448 * 179.85151 * 13 12 11 15 15 N 1.40064 * 108.43539 * 0.40327 * 14 13 12 16 16 C 1.37294 * 126.05158 * 179.74196 * 15 14 13 17 17 H 1.08006 * 119.99653 * 185.01657 * 16 15 14 18 18 C 1.39000 * 120.00416 * 5.01407 * 16 15 14 19 19 N 1.31286 * 120.00271 * 354.98548 * 18 16 15 20 20 Si 1.86803 * 120.00241 * 174.98534 * 18 16 15 21 21 H 1.48503 * 109.47350 * 95.00084 * 20 18 16 22 22 H 1.48499 * 109.47225 * 215.00504 * 20 18 16 23 23 H 1.48501 * 109.46966 * 335.00088 * 20 18 16 24 24 C 1.35787 * 126.09791 * 179.97438 * 12 11 9 25 25 C 1.46395 * 120.83031 * 294.97867 * 6 5 3 26 26 C 1.53235 * 109.48060 * 64.86526 * 25 6 5 27 27 S 1.81742 * 109.58325 * 295.00021 * 3 2 1 28 28 H 1.09004 * 109.47101 * 59.99965 * 1 2 3 29 29 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47176 * 299.99666 * 1 2 3 31 31 H 1.09000 * 109.47176 * 240.00334 * 2 1 3 32 32 H 1.08994 * 109.47217 * 120.00028 * 2 1 3 33 33 H 1.09004 * 109.46605 * 297.52586 * 5 3 2 34 34 H 1.09003 * 109.46869 * 57.51346 * 5 3 2 35 35 H 0.97009 * 120.00130 * 359.97438 * 11 9 7 36 36 H 1.07997 * 125.81190 * 359.97438 * 13 12 11 37 37 H 0.96991 * 120.00280 * 179.97438 * 19 18 16 38 38 H 1.07998 * 126.25458 * 359.95122 * 24 12 11 39 39 H 1.08999 * 109.35138 * 304.93354 * 25 6 5 40 40 H 1.08997 * 109.59165 * 184.94274 * 25 6 5 41 41 H 1.09001 * 109.58560 * 182.69474 * 26 25 6 42 42 H 1.09007 * 109.58226 * 62.42054 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6102 1.9819 0.8441 5 6 3.5684 1.4500 0.1102 6 7 4.0556 2.8290 0.0503 7 6 4.6649 3.3681 1.1249 8 8 4.7191 2.7476 2.1665 9 6 5.2730 4.7286 1.0338 10 8 5.1223 5.3950 0.0303 11 7 5.9892 5.2170 2.0657 12 6 6.5611 6.4953 1.9799 13 6 6.4740 7.3706 0.8816 14 7 7.1284 8.4656 1.1737 15 7 7.6651 8.3309 2.4604 16 6 8.4222 9.2659 3.1221 17 1 8.8555 9.0283 4.0824 18 6 8.6310 10.5181 2.5560 19 7 8.1884 10.7740 1.3468 20 14 9.5415 11.8369 3.5158 21 1 10.9782 11.8197 3.1402 22 1 8.9632 13.1676 3.1995 23 1 9.4071 11.5720 4.9708 24 6 7.3019 7.1063 2.9400 25 6 3.8884 3.6318 -1.1624 26 6 2.3959 3.8667 -1.4180 27 16 1.5608 2.2581 -1.5519 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8665 1.0001 1.0573 34 1 3.9949 0.8779 -0.7138 35 1 6.1094 4.6848 2.8678 36 1 5.9538 7.1732 -0.0441 37 1 8.3338 11.6479 0.9520 38 1 7.5568 6.6978 3.9067 39 1 4.3230 3.1011 -2.0096 40 1 4.3911 4.5909 -1.0380 41 1 2.2674 4.4234 -2.3462 42 1 1.9682 4.4327 -0.5903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746422648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:10 Heat of formation + Delta-G solvation = 38.853334 kcal Electronic energy + Delta-G solvation = -26651.124430 eV Core-core repulsion = 22760.537890 eV Total energy + Delta-G solvation = -3890.586540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98480 -39.71410 -38.28049 -37.05659 -35.28098 -34.31349 -33.28440 -30.97397 -30.43141 -29.64143 -28.15022 -25.75442 -24.66944 -23.93051 -22.44971 -21.75641 -21.20881 -19.90728 -19.66036 -17.89375 -17.56701 -16.98568 -16.50367 -15.97784 -15.61576 -15.44580 -15.19714 -15.15877 -14.72537 -14.53332 -14.19150 -13.92331 -13.78326 -13.35879 -13.24097 -13.15085 -12.98383 -12.68959 -12.14709 -11.96642 -11.80766 -11.69704 -11.52733 -11.40560 -11.35561 -11.31924 -10.96559 -10.78064 -10.59546 -10.45851 -9.96425 -9.32881 -9.14573 -8.99214 -8.70979 -8.22799 -7.80972 -6.90715 -6.68672 -4.36309 1.43340 1.50244 2.32154 2.35706 2.86681 2.99405 3.04783 3.15734 3.53733 3.58612 3.77550 4.24750 4.28691 4.36110 4.49706 4.72301 4.77714 4.82665 4.89963 4.95591 4.97691 5.15599 5.26480 5.31311 5.39577 5.48840 5.62950 5.70831 5.78839 5.94773 5.97234 6.08915 6.17761 6.24238 6.61799 6.79815 6.94234 6.97162 7.08790 7.55624 7.72839 7.93605 8.07668 8.34579 8.58348 9.21575 9.49694 10.27159 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.002214 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.230801 B =12643.175427 C =13193.893350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.064 4.064 4 H 0.091 0.909 5 C 0.109 3.891 6 N -0.587 5.587 7 C 0.516 3.484 8 O -0.525 6.525 9 C 0.486 3.514 10 O -0.509 6.509 11 N -0.571 5.571 12 C -0.076 4.076 13 C -0.023 4.023 14 N -0.261 5.261 15 N -0.136 5.136 16 C -0.321 4.321 17 H 0.119 0.881 18 C 0.047 3.953 19 N -0.765 5.765 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.262 1.262 24 C -0.075 4.075 25 C 0.030 3.970 26 C -0.091 4.091 27 S -0.267 6.267 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.411 0.589 36 H 0.179 0.821 37 H 0.277 0.723 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.190 0.810 41 H 0.117 0.883 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 -16.205 -2.395 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.193 4.193 4 H 0.109 0.891 5 C -0.016 4.016 6 N -0.320 5.320 7 C 0.299 3.701 8 O -0.401 6.401 9 C 0.269 3.731 10 O -0.389 6.389 11 N -0.212 5.212 12 C -0.182 4.182 13 C -0.198 4.198 14 N -0.091 5.091 15 N 0.098 4.902 16 C -0.454 4.454 17 H 0.137 0.863 18 C -0.171 4.171 19 N -0.391 5.391 20 Si 0.760 3.240 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.227 4.227 25 C -0.093 4.093 26 C -0.240 4.240 27 S -0.040 6.040 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.246 0.754 36 H 0.195 0.805 37 H 0.087 0.913 38 H 0.167 0.833 39 H 0.094 0.906 40 H 0.205 0.795 41 H 0.135 0.865 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.932 -15.101 -3.941 18.499 hybrid contribution 0.728 -0.208 2.004 2.142 sum -9.205 -15.309 -1.938 17.968 Atomic orbital electron populations 1.21798 0.94753 1.01819 1.02697 1.21333 0.96941 0.92675 1.03121 1.23647 0.98120 0.99976 0.97600 0.89109 1.21831 0.91997 0.82864 1.04887 1.47774 1.56511 1.13507 1.14187 1.20224 0.79130 0.87143 0.83625 1.90727 1.58488 1.62558 1.28357 1.19608 0.82070 0.87037 0.84405 1.89983 1.60749 1.58928 1.29264 1.42151 1.46480 1.15583 1.16990 1.17251 1.13533 0.87992 0.99422 1.24147 1.04418 0.91880 0.99394 1.78280 1.16408 1.19813 0.94620 1.44586 1.28078 1.08356 1.09189 1.19952 1.29382 0.92285 1.03752 0.86344 1.25681 0.96870 0.98718 0.95859 1.70200 1.34699 1.22318 1.11911 0.85784 0.79235 0.79232 0.79794 1.19546 1.19944 1.18640 1.21315 1.10163 0.90860 1.00343 1.23850 0.95848 1.03497 0.86057 1.23890 0.97984 0.95648 1.06498 1.86778 1.69555 1.18696 1.29008 0.91635 0.92404 0.92570 0.90750 0.90373 0.87781 0.89635 0.75351 0.80461 0.91255 0.83278 0.90598 0.79544 0.86530 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.74 37.16 0.36 -0.77 16 2 C -0.10 -0.77 5.42 -26.73 -0.14 -0.91 16 3 C -0.06 -0.61 2.76 -26.61 -0.07 -0.69 16 4 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.11 1.12 5.51 -3.98 -0.02 1.10 16 6 N -0.59 -7.32 2.79 -174.14 -0.49 -7.81 16 7 C 0.52 7.62 7.71 -11.65 -0.09 7.53 16 8 O -0.53 -8.38 15.81 5.49 0.09 -8.30 16 9 C 0.49 8.16 7.77 -11.65 -0.09 8.07 16 10 O -0.51 -9.08 10.08 5.45 0.05 -9.02 16 11 N -0.57 -10.09 5.45 -10.46 -0.06 -10.14 16 12 C -0.08 -1.66 6.90 -83.92 -0.58 -2.24 16 13 C -0.02 -0.55 10.84 -17.02 -0.18 -0.74 16 14 N -0.26 -7.18 10.41 30.81 0.32 -6.85 16 15 N -0.14 -3.56 3.73 -11.40 -0.04 -3.60 16 16 C -0.32 -8.14 10.24 -14.82 -0.15 -8.30 16 17 H 0.12 2.67 7.84 -52.48 -0.41 2.26 16 18 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 19 N -0.77 -20.50 11.83 55.50 0.66 -19.85 16 20 Si 0.94 18.18 29.55 -169.99 -5.02 13.16 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 24 C -0.08 -1.69 11.50 -16.38 -0.19 -1.88 16 25 C 0.03 0.35 6.09 -3.98 -0.02 0.32 16 26 C -0.09 -0.99 6.66 37.28 0.25 -0.74 16 27 S -0.27 -2.83 20.49 -107.50 -2.20 -5.04 16 28 H 0.06 0.55 7.14 -51.93 -0.37 0.18 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.10 6.91 -51.93 -0.36 0.75 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.41 6.27 8.31 -40.82 -0.34 5.93 16 36 H 0.18 4.10 5.92 -52.49 -0.31 3.79 16 37 H 0.28 6.76 8.31 -40.82 -0.34 6.43 16 38 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.19 2.60 3.47 -58.06 -0.20 2.40 16 41 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -29.87 357.32 -7.70 -37.56 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.35 Total: 12.67 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.03 Total: 1.84 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.39 Total: -48.25 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.14 Total: -17.32 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.16 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.20 Total: -5.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.87 -7.70 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746422648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.416 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds