Wall clock time and date at job start Tue Mar 31 2020 21:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47007 * 2 1 4 4 H 1.09004 * 109.57861 * 55.27675 * 3 2 1 5 5 C 1.53242 * 109.69617 * 175.61848 * 3 2 1 6 6 N 1.46376 * 109.48955 * 177.51974 * 5 3 2 7 7 C 1.34777 * 119.64709 * 114.91238 * 6 5 3 8 8 O 1.21363 * 119.99950 * 354.52838 * 7 6 5 9 9 C 1.49304 * 119.99629 * 174.52990 * 7 6 5 10 10 O 1.21399 * 120.00656 * 6.18093 * 9 7 6 11 11 N 1.34777 * 119.99785 * 186.18164 * 9 7 6 12 12 C 1.40297 * 120.00156 * 179.97438 * 11 9 7 13 13 C 1.40718 * 126.09851 * 359.69362 * 12 11 9 14 14 N 1.30875 * 108.37448 * 179.85151 * 13 12 11 15 15 N 1.40064 * 108.43539 * 0.40327 * 14 13 12 16 16 C 1.37294 * 126.05158 * 179.74196 * 15 14 13 17 17 H 1.08006 * 119.99653 * 185.01657 * 16 15 14 18 18 C 1.39000 * 120.00416 * 5.01407 * 16 15 14 19 19 N 1.31286 * 120.00271 * 354.98548 * 18 16 15 20 20 Si 1.86803 * 120.00241 * 174.98534 * 18 16 15 21 21 H 1.48503 * 109.47350 * 95.00084 * 20 18 16 22 22 H 1.48499 * 109.47225 * 215.00504 * 20 18 16 23 23 H 1.48501 * 109.46966 * 335.00088 * 20 18 16 24 24 C 1.35787 * 126.09791 * 179.97438 * 12 11 9 25 25 C 1.46395 * 120.83031 * 294.97867 * 6 5 3 26 26 C 1.53235 * 109.48060 * 64.86526 * 25 6 5 27 27 S 1.81742 * 109.58325 * 295.00021 * 3 2 1 28 28 H 1.09004 * 109.47101 * 59.99965 * 1 2 3 29 29 H 1.09000 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47176 * 299.99666 * 1 2 3 31 31 H 1.09000 * 109.47176 * 240.00334 * 2 1 3 32 32 H 1.08994 * 109.47217 * 120.00028 * 2 1 3 33 33 H 1.09004 * 109.46605 * 297.52586 * 5 3 2 34 34 H 1.09003 * 109.46869 * 57.51346 * 5 3 2 35 35 H 0.97009 * 120.00130 * 359.97438 * 11 9 7 36 36 H 1.07997 * 125.81190 * 359.97438 * 13 12 11 37 37 H 0.96991 * 120.00280 * 179.97438 * 19 18 16 38 38 H 1.07998 * 126.25458 * 359.95122 * 24 12 11 39 39 H 1.08999 * 109.35138 * 304.93354 * 25 6 5 40 40 H 1.08997 * 109.59165 * 184.94274 * 25 6 5 41 41 H 1.09001 * 109.58560 * 182.69474 * 26 25 6 42 42 H 1.09007 * 109.58226 * 62.42054 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6102 1.9819 0.8441 5 6 3.5684 1.4500 0.1102 6 7 4.0556 2.8290 0.0503 7 6 4.6649 3.3681 1.1249 8 8 4.7191 2.7476 2.1665 9 6 5.2730 4.7286 1.0338 10 8 5.1223 5.3950 0.0303 11 7 5.9892 5.2170 2.0657 12 6 6.5611 6.4953 1.9799 13 6 6.4740 7.3706 0.8816 14 7 7.1284 8.4656 1.1737 15 7 7.6651 8.3309 2.4604 16 6 8.4222 9.2659 3.1221 17 1 8.8555 9.0283 4.0824 18 6 8.6310 10.5181 2.5560 19 7 8.1884 10.7740 1.3468 20 14 9.5415 11.8369 3.5158 21 1 10.9782 11.8197 3.1402 22 1 8.9632 13.1676 3.1995 23 1 9.4071 11.5720 4.9708 24 6 7.3019 7.1063 2.9400 25 6 3.8884 3.6318 -1.1624 26 6 2.3959 3.8667 -1.4180 27 16 1.5608 2.2581 -1.5519 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8665 1.0001 1.0573 34 1 3.9949 0.8779 -0.7138 35 1 6.1094 4.6848 2.8678 36 1 5.9538 7.1732 -0.0441 37 1 8.3338 11.6479 0.9520 38 1 7.5568 6.6978 3.9067 39 1 4.3230 3.1011 -2.0096 40 1 4.3911 4.5909 -1.0380 41 1 2.2674 4.4234 -2.3462 42 1 1.9682 4.4327 -0.5903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746422648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:09 Heat of formation + Delta-G solvation = 20.171649 kcal Electronic energy + Delta-G solvation = -26651.934529 eV Core-core repulsion = 22760.537890 eV Total energy + Delta-G solvation = -3891.396639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32688 -41.38046 -39.66763 -38.12938 -36.34058 -35.62977 -34.98144 -32.30580 -31.88902 -30.57325 -29.83359 -27.29230 -26.03134 -24.91089 -23.61418 -22.92446 -22.46131 -21.40529 -21.21061 -19.50150 -18.80828 -18.18091 -17.55255 -17.45771 -17.12290 -16.74042 -16.51851 -16.06747 -15.94118 -15.66082 -15.65013 -15.22018 -15.00429 -14.81630 -14.58062 -14.12837 -14.05497 -13.67765 -13.51589 -13.30069 -12.98563 -12.94174 -12.89553 -12.68729 -12.43823 -12.19445 -12.09064 -12.03244 -12.01708 -11.73704 -11.09101 -10.88069 -10.85003 -10.17228 -10.14424 -9.95454 -8.69717 -8.64101 -8.50018 -6.27203 0.13873 0.66576 1.15204 1.28142 1.41600 1.47483 1.58532 1.69451 1.96298 2.09369 2.36473 2.48828 2.79984 3.06445 3.27965 3.49896 3.75007 3.90177 3.98720 4.04527 4.29170 4.35765 4.38512 4.50087 4.51757 4.52204 4.68727 4.73169 4.81127 4.86486 4.93538 4.97915 5.07795 5.11999 5.18457 5.26114 5.39031 5.53609 5.81939 5.91217 6.16813 6.33472 6.61637 6.69622 7.01582 7.40098 7.62382 8.49218 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033596 B = 0.002214 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.230801 B =12643.175427 C =13193.893350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.058 4.058 4 H 0.078 0.922 5 C 0.107 3.893 6 N -0.579 5.579 7 C 0.522 3.478 8 O -0.536 6.536 9 C 0.490 3.510 10 O -0.518 6.518 11 N -0.573 5.573 12 C -0.060 4.060 13 C -0.042 4.042 14 N -0.308 5.308 15 N -0.163 5.163 16 C -0.353 4.353 17 H 0.141 0.859 18 C -0.004 4.004 19 N -0.819 5.819 20 Si 1.017 2.983 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.245 1.245 24 C -0.073 4.073 25 C 0.032 3.968 26 C -0.090 4.090 27 S -0.270 6.270 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.424 0.576 36 H 0.182 0.818 37 H 0.278 0.722 38 H 0.187 0.813 39 H 0.091 0.909 40 H 0.171 0.829 41 H 0.130 0.870 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 -18.164 -1.473 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.188 4.188 4 H 0.096 0.904 5 C -0.016 4.016 6 N -0.311 5.311 7 C 0.304 3.696 8 O -0.413 6.413 9 C 0.273 3.727 10 O -0.399 6.399 11 N -0.217 5.217 12 C -0.166 4.166 13 C -0.217 4.217 14 N -0.140 5.140 15 N 0.069 4.931 16 C -0.484 4.484 17 H 0.158 0.842 18 C -0.216 4.216 19 N -0.447 5.447 20 Si 0.836 3.164 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.168 1.168 24 C -0.224 4.224 25 C -0.090 4.090 26 C -0.238 4.238 27 S -0.043 6.043 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.262 0.738 36 H 0.198 0.802 37 H 0.088 0.912 38 H 0.204 0.796 39 H 0.109 0.891 40 H 0.186 0.814 41 H 0.148 0.852 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.211 -17.112 -3.029 20.156 hybrid contribution 0.655 0.165 1.620 1.755 sum -9.556 -16.947 -1.409 19.507 Atomic orbital electron populations 1.21780 0.94668 1.02545 1.01926 1.21359 0.96938 0.91161 1.04200 1.23675 0.97484 1.01144 0.96468 0.90374 1.22045 0.92455 0.81334 1.05764 1.47857 1.55304 1.14404 1.13534 1.19737 0.79575 0.86073 0.84178 1.90730 1.59302 1.62456 1.28811 1.20136 0.81027 0.87791 0.83725 1.90049 1.60524 1.59674 1.29621 1.42085 1.47081 1.14384 1.18128 1.17257 1.12248 0.89039 0.98071 1.24315 1.04797 0.92214 1.00418 1.78171 1.17908 1.21607 0.96270 1.44835 1.29342 1.09775 1.09149 1.20627 1.30101 0.92897 1.04770 0.84191 1.26848 0.97274 1.00905 0.96591 1.70361 1.37138 1.23035 1.14129 0.84601 0.77553 0.75369 0.78868 1.18968 1.20153 1.16807 1.22010 1.08960 0.89740 1.01653 1.23713 0.96483 1.02654 0.86150 1.23831 0.97097 0.96138 1.06766 1.86840 1.69606 1.18278 1.29576 0.92804 0.90965 0.92919 0.90008 0.88876 0.87626 0.87792 0.73832 0.80180 0.91219 0.79620 0.89078 0.81401 0.85242 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.74 71.98 0.70 -1.23 16 2 C -0.10 -1.21 5.42 30.60 0.17 -1.05 16 3 C -0.06 -1.00 2.76 30.68 0.08 -0.91 16 4 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 5 C 0.11 1.95 5.51 86.48 0.48 2.43 16 6 N -0.58 -13.45 2.79 -823.21 -2.30 -15.74 16 7 C 0.52 14.70 7.71 87.22 0.67 15.37 16 8 O -0.54 -16.14 15.81 -3.29 -0.05 -16.19 16 9 C 0.49 16.11 7.77 87.22 0.68 16.79 16 10 O -0.52 -18.50 10.08 -3.40 -0.03 -18.53 16 11 N -0.57 -19.73 5.45 -305.34 -1.66 -21.39 16 12 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16 13 C -0.04 -2.09 10.84 85.44 0.93 -1.16 16 14 N -0.31 -17.59 10.41 -56.44 -0.59 -18.17 16 15 N -0.16 -8.70 3.73 -189.98 -0.71 -9.41 16 16 C -0.35 -18.05 10.24 84.02 0.86 -17.19 16 17 H 0.14 6.22 7.84 -2.91 -0.02 6.20 16 18 C 0.00 -0.19 5.50 84.96 0.47 0.28 16 19 N -0.82 -45.55 11.83 21.66 0.26 -45.30 16 20 Si 1.02 37.35 29.55 68.60 2.03 39.38 16 21 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 22 H -0.28 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.25 -8.20 7.11 99.48 0.71 -7.49 16 24 C -0.07 -3.23 11.50 83.41 0.96 -2.27 16 25 C 0.03 0.71 6.09 86.48 0.53 1.24 16 26 C -0.09 -1.83 6.66 72.06 0.48 -1.35 16 27 S -0.27 -5.25 20.49 -56.49 -1.16 -6.41 16 28 H 0.05 0.81 7.14 -2.39 -0.02 0.80 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.96 6.91 -2.38 -0.02 1.95 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.42 12.28 8.31 -92.70 -0.77 11.51 16 36 H 0.18 8.64 5.92 -2.91 -0.02 8.63 16 37 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.19 6.60 8.06 -2.91 -0.02 6.58 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.17 4.59 3.47 -99.51 -0.35 4.25 16 41 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -66.41 357.32 3.00 -63.41 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.04 Total: 39.76 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 7.26 Total: 8.61 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -5.00 Total: -110.02 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.09 Total: -34.73 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.16 Total: -6.41 kcal Total: -66.41 3.00 -63.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746422648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.581 kcal (2) G-P(sol) polarization free energy of solvation -66.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds