Wall clock time and date at job start Tue Mar 31 2020 20:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 110.30308 * 2 1 4 4 N 1.46505 * 109.47241 * 65.71729 * 3 2 1 5 5 C 1.34776 * 120.00127 * 179.97438 * 4 3 2 6 6 O 1.21358 * 120.00173 * 0.02562 * 5 4 3 7 7 C 1.49312 * 119.99767 * 179.97438 * 5 4 3 8 8 O 1.21399 * 119.99794 * 0.02562 * 7 5 4 9 9 N 1.34776 * 119.99767 * 180.02562 * 7 5 4 10 10 C 1.40292 * 119.99790 * 180.02562 * 9 7 5 11 11 C 1.40723 * 126.09967 * 0.02562 * 10 9 7 12 12 N 1.30879 * 108.36996 * 179.97438 * 11 10 9 13 13 N 1.40060 * 108.44121 * 359.97438 * 12 11 10 14 14 C 1.37293 * 126.05383 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99703 * 186.43637 * 14 13 12 16 16 C 1.39010 * 120.00188 * 6.43498 * 14 13 12 17 17 N 1.31281 * 119.99851 * 6.47930 * 16 14 13 18 18 Si 1.86795 * 119.99836 * 186.20821 * 16 14 13 19 19 H 1.48508 * 109.47009 * 265.30902 * 18 16 14 20 20 H 1.48504 * 109.47254 * 25.30727 * 18 16 14 21 21 H 1.48501 * 109.47322 * 145.30827 * 18 16 14 22 22 C 1.35787 * 126.09774 * 180.29656 * 10 9 7 23 23 C 1.53707 * 110.43146 * 237.77073 * 2 1 3 24 24 C 1.52945 * 112.48941 * 238.25457 * 23 2 1 25 25 C 1.55153 * 108.96108 * 30.10042 * 24 23 2 26 26 S 1.83396 * 110.34392 * 122.17085 * 2 1 3 27 27 H 1.08994 * 109.47172 * 60.70077 * 1 2 3 28 28 H 1.09001 * 109.47111 * 180.70089 * 1 2 3 29 29 H 1.08994 * 109.47180 * 300.69980 * 1 2 3 30 30 H 1.08998 * 109.47018 * 305.72014 * 3 2 1 31 31 H 1.08999 * 109.47399 * 185.71734 * 3 2 1 32 32 H 0.97001 * 119.99787 * 0.02562 * 4 3 2 33 33 H 0.97001 * 120.00086 * 0.02562 * 9 7 5 34 34 H 1.07995 * 125.81013 * 359.97438 * 11 10 9 35 35 H 0.97004 * 119.99595 * 179.72259 * 17 16 14 36 36 H 1.08008 * 126.25561 * 0.06621 * 22 10 9 37 37 H 1.09000 * 108.88946 * 359.04933 * 23 2 1 38 38 H 1.09000 * 108.88959 * 117.46486 * 23 2 1 39 39 H 1.08997 * 109.60188 * 270.17088 * 24 23 2 40 40 H 1.08999 * 109.45217 * 149.94341 * 24 23 2 41 41 H 1.09002 * 111.13033 * 200.65155 * 25 24 23 42 42 H 1.08995 * 111.12935 * 76.46822 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 7 1.6976 2.0901 1.2591 5 6 2.0628 3.3678 1.4838 6 8 2.6922 3.9758 0.6430 7 6 1.6921 4.0356 2.7667 8 8 1.0620 3.4275 3.6076 9 7 2.0568 5.3135 2.9912 10 6 1.7089 5.9408 4.1969 11 6 0.9856 5.3600 5.2551 12 7 0.8584 6.2507 6.2055 13 7 1.4926 7.4302 5.7951 14 6 1.5776 8.5951 6.5167 15 1 2.0000 9.4805 6.0650 16 6 1.1199 8.6350 7.8287 17 7 0.7247 7.5315 8.4198 18 14 1.0744 10.2577 8.7529 19 1 2.3185 10.4086 9.5497 20 1 0.9689 11.3771 7.7829 21 1 -0.1004 10.2773 9.6611 22 6 2.0057 7.2182 4.5488 23 6 2.0665 -0.7682 -1.2184 24 6 2.9675 -1.9387 -0.8218 25 6 2.5080 -2.4841 0.5562 26 16 2.1675 -0.9156 1.4555 27 1 -0.3633 0.5029 -0.8961 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5246 0.8836 30 1 1.6242 1.9839 -0.8343 31 1 3.1459 1.4210 -0.1024 32 1 1.1948 1.6040 1.9313 33 1 2.5599 5.7995 2.3192 34 1 0.6010 4.3511 5.2788 35 1 0.4091 7.5588 9.3367 36 1 2.5505 7.9350 3.9521 37 1 1.2234 -1.1510 -1.7935 38 1 2.6354 -0.0819 -1.8457 39 1 4.0008 -1.5983 -0.7542 40 1 2.8903 -2.7264 -1.5712 41 1 3.3042 -3.0498 1.0402 42 1 1.6042 -3.0855 0.4591 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746434186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:37 Heat of formation + Delta-G solvation = 11.735789 kcal Electronic energy + Delta-G solvation = -26023.179987 eV Core-core repulsion = 22131.417542 eV Total energy + Delta-G solvation = -3891.762445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.50551 -39.53649 -38.22953 -37.52172 -35.11428 -34.17124 -33.15872 -31.98467 -30.30804 -28.17946 -27.63295 -26.93084 -25.17795 -23.77559 -22.51121 -21.03774 -20.92175 -20.03962 -19.43876 -18.29971 -17.43467 -16.79104 -16.47176 -15.92199 -15.77915 -15.50033 -15.15132 -14.88033 -14.69106 -14.55356 -14.11967 -13.87610 -13.61641 -13.47411 -13.26295 -13.03648 -12.97416 -12.92208 -12.12734 -11.96060 -11.73291 -11.62023 -11.56775 -11.46253 -11.27711 -11.21857 -11.15057 -10.85057 -10.54546 -10.25423 -10.15841 -9.29691 -9.21353 -9.11725 -8.87102 -8.10124 -8.02057 -6.76259 -6.60646 -4.25791 1.37539 1.67170 1.93211 2.60342 2.94119 3.05240 3.10461 3.34617 3.72650 3.76754 3.91570 4.03684 4.07890 4.25558 4.38953 4.43701 4.59606 4.62404 4.71637 4.98287 5.00237 5.04830 5.12225 5.22144 5.27016 5.31268 5.36811 5.43985 5.47353 5.59979 5.78328 6.12953 6.21786 6.38182 6.77258 6.90924 6.93604 7.17805 7.20645 7.76957 7.86331 8.11740 8.20490 8.50740 8.71201 9.33108 9.61310 10.36466 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.002002 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.668677 B =13985.428809 C =14438.485978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C 0.142 3.858 4 N -0.701 5.701 5 C 0.517 3.483 6 O -0.529 6.529 7 C 0.484 3.516 8 O -0.521 6.521 9 N -0.583 5.583 10 C -0.069 4.069 11 C -0.025 4.025 12 N -0.263 5.263 13 N -0.138 5.138 14 C -0.323 4.323 15 H 0.118 0.882 16 C 0.048 3.952 17 N -0.769 5.769 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.263 1.263 21 H -0.275 1.275 22 C -0.076 4.076 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.074 4.074 26 S -0.269 6.269 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.415 0.585 33 H 0.409 0.591 34 H 0.178 0.822 35 H 0.276 0.724 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -16.493 -18.868 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.139 4.139 3 C 0.017 3.983 4 N -0.356 5.356 5 C 0.299 3.701 6 O -0.405 6.405 7 C 0.264 3.736 8 O -0.398 6.398 9 N -0.226 5.226 10 C -0.175 4.175 11 C -0.200 4.200 12 N -0.094 5.094 13 N 0.095 4.905 14 C -0.456 4.456 15 H 0.135 0.865 16 C -0.170 4.170 17 N -0.395 5.395 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.187 1.187 21 H -0.200 1.200 22 C -0.227 4.227 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.223 4.223 26 S -0.042 6.042 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.252 0.748 33 H 0.244 0.756 34 H 0.195 0.805 35 H 0.087 0.913 36 H 0.167 0.833 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.956 -16.021 -16.308 22.944 hybrid contribution 0.275 0.162 -1.645 1.676 sum 2.231 -15.858 -17.954 24.058 Atomic orbital electron populations 1.22079 0.91149 1.03076 1.03190 1.23550 0.99222 0.96452 0.94720 1.21455 1.01003 0.89127 0.86693 1.45703 1.57099 1.12734 1.20024 1.20278 0.79763 0.82331 0.87775 1.90725 1.39005 1.64342 1.46432 1.19609 0.83354 0.83096 0.87498 1.90663 1.39712 1.63948 1.45468 1.42132 1.51855 1.11164 1.17460 1.17250 1.16445 0.93884 0.89930 1.24131 1.03656 1.00756 0.91503 1.78198 1.19446 0.90993 1.20746 1.44539 1.28790 1.08970 1.08180 1.19901 1.43470 0.86843 0.95354 0.86459 1.25656 0.95385 0.99121 0.96822 1.70180 1.30420 1.26682 1.12221 0.85805 0.78544 0.80351 0.79417 1.19626 1.18675 1.19996 1.21316 1.12337 0.96789 0.92286 1.22091 1.00415 0.97010 0.96506 1.22383 1.00750 0.97368 0.95817 1.24360 1.04562 0.96584 0.96759 1.88295 1.84648 1.13122 1.18113 0.91312 0.91455 0.91155 0.89875 0.90002 0.74753 0.75605 0.80536 0.91325 0.83332 0.90270 0.89717 0.90209 0.89993 0.87557 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.26 37.16 0.31 -0.65 16 2 C -0.03 -0.22 0.84 -90.25 -0.08 -0.30 16 3 C 0.14 1.37 4.39 -4.04 -0.02 1.35 16 4 N -0.70 -8.90 5.01 -60.77 -0.30 -9.21 16 5 C 0.52 8.11 7.88 -11.65 -0.09 8.02 16 6 O -0.53 -8.83 16.47 5.49 0.09 -8.74 16 7 C 0.48 9.06 7.85 -11.65 -0.09 8.96 16 8 O -0.52 -10.92 13.62 5.45 0.07 -10.84 16 9 N -0.58 -11.27 5.45 -10.45 -0.06 -11.33 16 10 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 11 C -0.02 -0.65 10.85 -17.02 -0.18 -0.83 16 12 N -0.26 -7.63 10.46 30.81 0.32 -7.31 16 13 N -0.14 -3.79 3.73 -11.40 -0.04 -3.83 16 14 C -0.32 -8.54 10.23 -14.82 -0.15 -8.69 16 15 H 0.12 2.76 7.84 -52.49 -0.41 2.35 16 16 C 0.05 1.23 5.48 -17.50 -0.10 1.13 16 17 N -0.77 -21.39 11.90 55.50 0.66 -20.73 16 18 Si 0.94 18.87 29.56 -169.99 -5.02 13.84 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 23 C -0.12 -0.63 5.74 -26.39 -0.15 -0.78 16 24 C -0.12 -0.60 6.34 -25.62 -0.16 -0.76 16 25 C -0.07 -0.45 7.52 38.30 0.29 -0.16 16 26 S -0.27 -2.62 21.15 -107.50 -2.27 -4.90 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.60 7.28 -51.93 -0.38 0.22 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.41 5.39 6.57 -40.82 -0.27 5.12 16 33 H 0.41 6.80 8.29 -40.82 -0.34 6.47 16 34 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 35 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.15 2.96 8.06 -52.48 -0.42 2.54 16 37 H 0.08 0.33 7.62 -51.93 -0.40 -0.07 16 38 H 0.08 0.40 7.62 -51.93 -0.40 0.00 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -33.29 365.11 -7.69 -40.97 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -5.44 Total: 13.48 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.20 Total: 3.09 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.58 Total: -52.41 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.16 Total: -19.59 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.27 Total: -4.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.29 -7.69 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746434186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.711 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds