Wall clock time and date at job start Tue Mar 31 2020 21:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46941 * 2 1 4 4 H 1.08997 * 109.76780 * 54.24788 * 3 2 1 5 5 C 1.53414 * 109.77518 * 174.99904 * 3 2 1 6 6 N 1.46750 * 108.60846 * 182.89377 * 5 3 2 7 7 C 1.46895 * 111.00516 * 74.56493 * 6 5 3 8 8 C 1.50698 * 109.47305 * 54.83019 * 7 6 5 9 9 O 1.21284 * 119.99408 * 7.59589 * 8 7 6 10 10 N 1.34772 * 120.00345 * 187.59883 * 8 7 6 11 11 C 1.46497 * 120.00085 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46968 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00263 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99948 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00063 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46974 * 60.00252 * 16 14 12 18 18 H 1.48500 * 109.47111 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46981 * 300.00367 * 16 14 12 20 20 C 1.39861 * 112.13113 * 309.77370 * 6 5 3 21 21 C 1.39177 * 118.58548 * 199.82984 * 20 6 5 22 22 C 1.38054 * 120.26365 * 180.26629 * 21 20 6 23 23 C 1.38257 * 120.12635 * 0.08279 * 22 21 20 24 24 C 1.38268 * 120.01164 * 0.17745 * 23 22 21 25 25 Cl 1.73596 * 119.90919 * 179.68234 * 24 23 22 26 26 C 1.38881 * 120.18370 * 359.41511 * 24 23 22 27 27 O 1.36178 * 118.74711 * 180.61922 * 26 24 23 28 28 H 1.09000 * 109.47646 * 299.99753 * 1 2 3 29 29 H 1.09006 * 109.47279 * 59.99811 * 1 2 3 30 30 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46943 * 240.00257 * 2 1 3 32 32 H 1.08999 * 109.46763 * 119.99821 * 2 1 3 33 33 H 1.09004 * 109.61551 * 63.15268 * 5 3 2 34 34 H 1.09000 * 109.76175 * 302.71651 * 5 3 2 35 35 H 1.08999 * 109.47820 * 174.83408 * 7 6 5 36 36 H 1.09002 * 109.46716 * 294.83260 * 7 6 5 37 37 H 0.97001 * 119.99938 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.47098 * 299.99186 * 11 10 8 39 39 H 1.09001 * 109.47593 * 59.99778 * 11 10 8 40 40 H 0.97003 * 119.99960 * 180.02562 * 15 14 12 41 41 H 1.07998 * 119.86639 * 0.28997 * 21 20 6 42 42 H 1.07999 * 119.93788 * 180.10947 * 22 21 20 43 43 H 1.07991 * 119.99712 * 179.90089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5978 1.9899 0.8324 5 6 3.5689 1.4526 0.1258 6 7 4.0241 2.8461 0.1932 7 6 3.7335 3.4319 1.5086 8 6 4.3351 2.5683 2.5872 9 8 5.0602 1.6429 2.2889 10 7 4.0674 2.8242 3.8830 11 6 4.6527 1.9849 4.9315 12 6 4.2002 2.4790 6.2814 13 1 3.5428 3.3329 6.3513 14 6 4.6255 1.8408 7.4272 15 7 5.4265 0.8011 7.3420 16 14 4.0653 2.4536 9.1005 17 1 2.5839 2.3868 9.1816 18 1 4.6585 1.6028 10.1633 19 1 4.5084 3.8586 9.2869 20 6 3.4840 3.6270 -0.8337 21 6 4.1159 4.8223 -1.1639 22 6 3.6093 5.6228 -2.1682 23 6 2.4691 5.2415 -2.8508 24 6 1.8316 4.0583 -2.5259 25 17 0.3954 3.5862 -3.3792 26 6 2.3402 3.2438 -1.5225 27 8 1.6961 2.0789 -1.2352 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 4.0108 0.9648 -0.7431 34 1 3.8675 0.9259 1.0322 35 1 4.1619 4.4327 1.5634 36 1 2.6543 3.4904 1.6498 37 1 3.4877 3.5645 4.1215 38 1 4.3284 0.9533 4.7944 39 1 5.7399 2.0350 4.8724 40 1 5.7255 0.3519 8.1481 41 1 5.0063 5.1246 -0.6327 42 1 4.1049 6.5483 -2.4213 43 1 2.0737 5.8700 -3.6349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784371393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:03 Heat of formation + Delta-G solvation = -46.224911 kcal Electronic energy + Delta-G solvation = -27225.553306 eV Core-core repulsion = 23296.941038 eV Total energy + Delta-G solvation = -3928.612267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52977 -39.08068 -38.04694 -36.78840 -35.91118 -34.28962 -34.07376 -32.45565 -30.44860 -30.02090 -29.39828 -27.34094 -25.80206 -24.42763 -22.87373 -22.43295 -22.01897 -20.46146 -19.74455 -18.41113 -17.34229 -17.12812 -16.65614 -15.80486 -15.71240 -15.42005 -15.09482 -14.87428 -14.77732 -14.45265 -14.28950 -13.98095 -13.93061 -13.66578 -13.26443 -12.83720 -12.58933 -12.33206 -12.10094 -12.06516 -12.03081 -11.90216 -11.60380 -11.43999 -11.17138 -11.11620 -11.04453 -10.99609 -10.89013 -10.79222 -10.37862 -9.59927 -9.49950 -9.01941 -8.80646 -8.45560 -8.13671 -8.00093 -6.23879 -4.31544 0.88832 1.06704 1.99913 2.95178 3.11369 3.20488 3.22063 3.26215 3.27600 3.47216 3.98594 4.28248 4.32849 4.60463 4.64030 4.75622 4.81913 4.99475 5.03585 5.07742 5.12354 5.18262 5.21836 5.30150 5.38217 5.39337 5.57037 5.61091 5.78323 5.82384 5.86079 5.97027 6.03116 6.13558 6.15599 6.28381 6.63123 6.89909 7.17780 7.20956 7.27611 7.40556 7.56250 7.87848 8.46417 8.66539 8.92253 9.35207 10.86086 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.002750 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.606128 B =10179.293004 C =10946.703425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C 0.050 3.950 4 H 0.074 0.926 5 C 0.005 3.995 6 N -0.463 5.463 7 C 0.033 3.967 8 C 0.498 3.502 9 O -0.536 6.536 10 N -0.708 5.708 11 C 0.251 3.749 12 C -0.547 4.547 13 H 0.063 0.937 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.041 3.959 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.094 4.094 24 C -0.053 4.053 25 Cl -0.062 7.062 26 C 0.102 3.898 27 O -0.294 6.294 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.391 0.609 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 7.221 -19.448 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.008 4.008 4 H 0.092 0.908 5 C -0.122 4.122 6 N -0.179 5.179 7 C -0.095 4.095 8 C 0.282 3.718 9 O -0.415 6.415 10 N -0.356 5.356 11 C 0.131 3.869 12 C -0.585 4.585 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.057 4.057 21 C -0.100 4.100 22 C -0.148 4.148 23 C -0.114 4.114 24 C -0.081 4.081 25 Cl -0.033 7.033 26 C 0.053 3.947 27 O -0.208 6.208 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.224 0.776 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.776 6.206 -19.680 22.052 hybrid contribution -1.240 0.644 1.219 1.854 sum -9.016 6.851 -18.461 21.657 Atomic orbital electron populations 1.21737 0.94854 1.01884 1.02309 1.21511 0.97032 0.92635 1.03742 1.23324 0.97328 0.95414 0.84690 0.90788 1.23489 0.91667 0.89132 1.07927 1.58843 1.56220 1.02069 1.00753 1.22263 1.00020 0.99765 0.87472 1.20133 0.82358 0.85451 0.83906 1.90614 1.37557 1.31244 1.82093 1.46487 1.49413 1.33955 1.05787 1.19134 0.94272 0.90132 0.83380 1.21167 1.31289 1.15582 0.90454 0.91925 1.24945 0.94686 0.94703 0.99565 1.69958 1.32706 1.19931 1.29569 0.86471 0.78958 0.78809 0.82670 1.20037 1.21016 1.20020 1.18751 0.92530 0.96088 0.98283 1.21010 0.99142 0.92744 0.97075 1.20884 0.96535 1.00584 0.96776 1.20861 0.95768 0.94348 1.00374 1.20194 0.92981 0.96241 0.98650 1.98357 1.36834 1.92184 1.75902 1.18720 0.90514 0.88408 0.97083 1.86365 1.61666 1.33071 1.39672 0.92692 0.92050 0.92361 0.90614 0.89311 0.89022 0.84629 0.87255 0.91862 0.77599 0.95427 0.95343 0.92301 0.84522 0.84666 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.82 37.16 0.37 -1.16 16 2 C -0.11 -1.22 5.67 -26.73 -0.15 -1.37 16 3 C 0.05 0.63 2.80 -26.51 -0.07 0.56 16 4 H 0.07 0.96 6.80 -51.93 -0.35 0.60 16 5 C 0.00 0.07 4.85 -3.69 -0.02 0.05 16 6 N -0.46 -6.59 4.49 -172.20 -0.77 -7.36 16 7 C 0.03 0.46 5.19 -4.98 -0.03 0.43 16 8 C 0.50 9.05 7.24 -10.99 -0.08 8.97 16 9 O -0.54 -11.70 13.93 5.55 0.08 -11.62 16 10 N -0.71 -13.74 5.55 -61.47 -0.34 -14.09 16 11 C 0.25 6.30 5.43 -5.19 -0.03 6.27 16 12 C -0.55 -14.24 9.28 -34.44 -0.32 -14.56 16 13 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.88 -25.32 13.29 55.43 0.74 -24.59 16 16 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.04 0.52 5.12 -83.59 -0.43 0.10 16 21 C -0.08 -0.85 9.47 -39.30 -0.37 -1.22 16 22 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 23 C -0.09 -0.89 9.82 -39.56 -0.39 -1.27 16 24 C -0.05 -0.62 6.33 -39.33 -0.25 -0.87 16 25 Cl -0.06 -0.69 28.41 -51.86 -1.47 -2.16 16 26 C 0.10 1.33 6.47 -39.09 -0.25 1.08 16 27 O -0.29 -3.94 9.06 -20.31 -0.18 -4.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.65 7.89 -51.93 -0.41 0.25 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.14 2.23 4.99 -51.93 -0.26 1.98 16 35 H 0.11 1.29 7.85 -51.93 -0.41 0.88 16 36 H 0.06 0.78 6.89 -51.93 -0.36 0.42 16 37 H 0.39 6.47 8.32 -40.82 -0.34 6.13 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -30.60 368.39 -9.83 -40.44 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.89 Total: 5.56 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.52 Total: -2.87 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.38 Total: -46.03 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.11 Total: -15.74 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.47 Total: -2.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.60 -9.83 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784371393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.787 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds