Wall clock time and date at job start Tue Mar 31 2020 21:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46941 * 2 1 4 4 H 1.08997 * 109.76780 * 54.24788 * 3 2 1 5 5 C 1.53414 * 109.77518 * 174.99904 * 3 2 1 6 6 N 1.46750 * 108.60846 * 182.89377 * 5 3 2 7 7 C 1.46895 * 111.00516 * 74.56493 * 6 5 3 8 8 C 1.50698 * 109.47305 * 54.83019 * 7 6 5 9 9 O 1.21284 * 119.99408 * 7.59589 * 8 7 6 10 10 N 1.34772 * 120.00345 * 187.59883 * 8 7 6 11 11 C 1.46497 * 120.00085 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46968 * 179.97438 * 11 10 8 13 13 H 1.07994 * 120.00263 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99948 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00063 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00183 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46974 * 60.00252 * 16 14 12 18 18 H 1.48500 * 109.47111 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46981 * 300.00367 * 16 14 12 20 20 C 1.39861 * 112.13113 * 309.77370 * 6 5 3 21 21 C 1.39177 * 118.58548 * 199.82984 * 20 6 5 22 22 C 1.38054 * 120.26365 * 180.26629 * 21 20 6 23 23 C 1.38257 * 120.12635 * 0.08279 * 22 21 20 24 24 C 1.38268 * 120.01164 * 0.17745 * 23 22 21 25 25 Cl 1.73596 * 119.90919 * 179.68234 * 24 23 22 26 26 C 1.38881 * 120.18370 * 359.41511 * 24 23 22 27 27 O 1.36178 * 118.74711 * 180.61922 * 26 24 23 28 28 H 1.09000 * 109.47646 * 299.99753 * 1 2 3 29 29 H 1.09006 * 109.47279 * 59.99811 * 1 2 3 30 30 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46943 * 240.00257 * 2 1 3 32 32 H 1.08999 * 109.46763 * 119.99821 * 2 1 3 33 33 H 1.09004 * 109.61551 * 63.15268 * 5 3 2 34 34 H 1.09000 * 109.76175 * 302.71651 * 5 3 2 35 35 H 1.08999 * 109.47820 * 174.83408 * 7 6 5 36 36 H 1.09002 * 109.46716 * 294.83260 * 7 6 5 37 37 H 0.97001 * 119.99938 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.47098 * 299.99186 * 11 10 8 39 39 H 1.09001 * 109.47593 * 59.99778 * 11 10 8 40 40 H 0.97003 * 119.99960 * 180.02562 * 15 14 12 41 41 H 1.07998 * 119.86639 * 0.28997 * 21 20 6 42 42 H 1.07999 * 119.93788 * 180.10947 * 22 21 20 43 43 H 1.07991 * 119.99712 * 179.90089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5978 1.9899 0.8324 5 6 3.5689 1.4526 0.1258 6 7 4.0241 2.8461 0.1932 7 6 3.7335 3.4319 1.5086 8 6 4.3351 2.5683 2.5872 9 8 5.0602 1.6429 2.2889 10 7 4.0674 2.8242 3.8830 11 6 4.6527 1.9849 4.9315 12 6 4.2002 2.4790 6.2814 13 1 3.5428 3.3329 6.3513 14 6 4.6255 1.8408 7.4272 15 7 5.4265 0.8011 7.3420 16 14 4.0653 2.4536 9.1005 17 1 2.5839 2.3868 9.1816 18 1 4.6585 1.6028 10.1633 19 1 4.5084 3.8586 9.2869 20 6 3.4840 3.6270 -0.8337 21 6 4.1159 4.8223 -1.1639 22 6 3.6093 5.6228 -2.1682 23 6 2.4691 5.2415 -2.8508 24 6 1.8316 4.0583 -2.5259 25 17 0.3954 3.5862 -3.3792 26 6 2.3402 3.2438 -1.5225 27 8 1.6961 2.0789 -1.2352 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 4.0108 0.9648 -0.7431 34 1 3.8675 0.9259 1.0322 35 1 4.1619 4.4327 1.5634 36 1 2.6543 3.4904 1.6498 37 1 3.4877 3.5645 4.1215 38 1 4.3284 0.9533 4.7944 39 1 5.7399 2.0350 4.8724 40 1 5.7255 0.3519 8.1481 41 1 5.0063 5.1246 -0.6327 42 1 4.1049 6.5483 -2.4213 43 1 2.0737 5.8700 -3.6349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784371393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:02 Heat of formation + Delta-G solvation = -66.018028 kcal Electronic energy + Delta-G solvation = -27226.411600 eV Core-core repulsion = 23296.941038 eV Total energy + Delta-G solvation = -3929.470561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53341 -40.52863 -38.92615 -37.76656 -36.94221 -36.07822 -34.97225 -34.38564 -31.33887 -30.89875 -30.71317 -28.96628 -27.02355 -25.41004 -24.54945 -23.44225 -22.98214 -21.72076 -21.08077 -19.42202 -18.78947 -18.33418 -17.67017 -17.32551 -17.18371 -16.69018 -16.37927 -16.08438 -15.80029 -15.53057 -15.46319 -15.17737 -14.90950 -14.81329 -14.45819 -14.14744 -14.03430 -13.95318 -13.25515 -13.21315 -13.00667 -12.93784 -12.85491 -12.71708 -12.53076 -12.36247 -12.23961 -12.09013 -12.02959 -11.85499 -11.78164 -11.51376 -10.85638 -10.78466 -10.26961 -9.83617 -9.32477 -9.07055 -8.29305 -6.45592 0.06004 0.23468 1.15412 1.43663 1.46783 1.55002 1.62843 2.02688 2.11699 2.38329 2.57304 2.70876 3.05954 3.31433 3.65340 3.71246 3.75642 3.84338 4.04117 4.05086 4.17615 4.23206 4.27163 4.34166 4.41037 4.48722 4.61342 4.70857 4.84474 4.98792 5.00982 5.05301 5.10208 5.12091 5.24660 5.30295 5.36365 5.44726 5.47639 5.65774 5.69692 5.84167 5.92802 6.25276 6.64374 6.84495 7.22723 7.41704 8.82286 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016393 B = 0.002750 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.606128 B =10179.293004 C =10946.703425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.058 3.942 4 H 0.070 0.930 5 C 0.010 3.990 6 N -0.476 5.476 7 C 0.048 3.952 8 C 0.499 3.501 9 O -0.575 6.575 10 N -0.703 5.703 11 C 0.270 3.730 12 C -0.557 4.557 13 H 0.083 0.917 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.287 1.287 19 H -0.262 1.262 20 C 0.022 3.978 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.086 4.086 24 C -0.066 4.066 25 Cl -0.064 7.064 26 C 0.080 3.920 27 O -0.303 6.303 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.082 0.918 37 H 0.409 0.591 38 H -0.009 1.009 39 H -0.011 1.011 40 H 0.269 0.731 41 H 0.147 0.853 42 H 0.172 0.828 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 10.122 -20.084 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.000 4.000 4 H 0.088 0.912 5 C -0.117 4.117 6 N -0.192 5.192 7 C -0.080 4.080 8 C 0.285 3.715 9 O -0.456 6.456 10 N -0.353 5.353 11 C 0.147 3.853 12 C -0.595 4.595 13 H 0.101 0.899 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.804 3.196 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.074 4.074 21 C -0.102 4.102 22 C -0.133 4.133 23 C -0.105 4.105 24 C -0.094 4.094 25 Cl -0.035 7.035 26 C 0.031 3.969 27 O -0.216 6.216 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.100 0.900 37 H 0.244 0.756 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.077 0.923 41 H 0.165 0.835 42 H 0.189 0.811 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.124 9.153 -20.353 24.110 hybrid contribution -0.789 -0.227 1.272 1.514 sum -9.913 8.925 -19.081 23.281 Atomic orbital electron populations 1.21690 0.93902 1.02667 1.01950 1.21523 0.97804 0.91807 1.03738 1.23224 0.95983 0.96122 0.84660 0.91175 1.23265 0.92921 0.89421 1.06101 1.58856 1.57058 1.02068 1.01243 1.22183 1.00734 0.99401 0.85682 1.20913 0.81336 0.85110 0.84134 1.90608 1.39253 1.33080 1.82679 1.46176 1.49784 1.33972 1.05415 1.18536 0.92093 0.89374 0.85309 1.21585 1.31236 1.16006 0.90657 0.89856 1.26010 0.94547 0.94675 1.04138 1.70121 1.34310 1.21583 1.30779 0.85265 0.78904 0.78469 0.76955 1.18713 1.21230 1.18701 1.18862 0.93226 0.97013 0.98344 1.21253 0.99283 0.92046 0.97600 1.21282 0.95768 1.01131 0.95113 1.21258 0.95390 0.93457 1.00391 1.20450 0.93320 0.96941 0.98681 1.98354 1.36978 1.92346 1.75825 1.18968 0.91154 0.88627 0.98127 1.86346 1.61983 1.33644 1.39674 0.92792 0.92557 0.91033 0.90324 0.89623 0.89693 0.87306 0.84491 0.90002 0.75572 0.99091 0.99271 0.92266 0.83483 0.81103 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.82 71.98 0.71 -2.18 16 2 C -0.11 -2.49 5.67 30.60 0.17 -2.32 16 3 C 0.06 1.48 2.80 30.73 0.09 1.57 16 4 H 0.07 1.82 6.80 -2.39 -0.02 1.80 16 5 C 0.01 0.30 4.85 86.47 0.42 0.72 16 6 N -0.48 -13.38 4.49 -698.71 -3.14 -16.52 16 7 C 0.05 1.27 5.19 85.56 0.44 1.71 16 8 C 0.50 18.48 7.24 87.66 0.63 19.11 16 9 O -0.58 -26.36 13.93 -3.04 -0.04 -26.40 16 10 N -0.70 -27.67 5.55 -466.79 -2.59 -30.26 16 11 C 0.27 14.10 5.43 85.63 0.46 14.57 16 12 C -0.56 -29.19 9.28 25.60 0.24 -28.95 16 13 H 0.08 3.92 7.60 -2.91 -0.02 3.90 16 14 C 0.01 0.34 5.46 84.65 0.46 0.80 16 15 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 16 Si 0.98 41.23 29.54 68.60 2.03 43.25 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 18 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 C 0.02 0.54 5.12 38.25 0.20 0.74 16 21 C -0.08 -1.52 9.47 22.45 0.21 -1.31 16 22 C -0.11 -1.55 10.03 22.23 0.22 -1.33 16 23 C -0.09 -1.32 9.82 22.28 0.22 -1.10 16 24 C -0.07 -1.42 6.33 22.43 0.14 -1.27 16 25 Cl -0.06 -1.34 28.41 -2.72 -0.08 -1.42 16 26 C 0.08 2.01 6.47 22.59 0.15 2.15 16 27 O -0.30 -8.03 9.06 -95.58 -0.87 -8.89 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.18 7.89 -2.38 -0.02 1.16 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.11 3.83 4.99 -2.39 -0.01 3.82 16 35 H 0.14 2.88 7.85 -2.39 -0.02 2.86 16 36 H 0.08 1.89 6.89 -2.39 -0.02 1.87 16 37 H 0.41 13.12 8.32 -92.71 -0.77 12.35 16 38 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 42 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.16 1.62 8.06 -2.92 -0.02 1.60 16 Total: -1.00 -69.17 368.39 0.63 -68.54 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.27 Total: 23.29 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 4.77 Total: 2.91 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -5.44 Total: -101.26 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.91 Total: -35.29 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -69.17 0.63 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784371393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.517 kcal (2) G-P(sol) polarization free energy of solvation -69.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds