Wall clock time and date at job start Tue Mar 31 2020 21:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47406 * 2 1 4 4 C 1.50707 * 109.46982 * 239.99929 * 2 1 3 5 5 H 1.08001 * 120.00104 * 241.19976 * 4 2 1 6 6 C 1.37881 * 119.99831 * 61.19772 * 4 2 1 7 7 N 1.31511 * 120.00229 * 194.18516 * 6 4 2 8 8 Si 1.86805 * 119.99799 * 14.18510 * 6 4 2 9 9 H 1.48498 * 109.47127 * 84.54031 * 8 6 4 10 10 H 1.48498 * 109.46723 * 204.54155 * 8 6 4 11 11 H 1.48499 * 109.46997 * 324.53886 * 8 6 4 12 12 C 1.53001 * 109.47156 * 120.00457 * 2 1 3 13 13 N 1.46502 * 109.47090 * 299.99410 * 12 2 1 14 14 C 1.33790 * 124.17377 * 90.02610 * 13 12 2 15 15 O 1.21538 * 123.77625 * 359.96287 * 14 13 12 16 16 N 1.34526 * 112.45704 * 179.97438 * 14 13 12 17 17 C 1.47316 * 106.61701 * 359.97438 * 16 14 13 18 18 H 1.08994 * 110.60111 * 241.31695 * 17 16 14 19 19 C 1.50702 * 110.59439 * 118.53184 * 17 16 14 20 20 C 1.38213 * 120.00082 * 341.44728 * 19 17 16 21 21 C 1.38431 * 119.99786 * 180.02562 * 20 19 17 22 22 F 1.35102 * 119.99771 * 180.02562 * 21 20 19 23 23 C 1.38473 * 120.00165 * 359.97438 * 21 20 19 24 24 C 1.38165 * 119.99735 * 359.97340 * 23 21 20 25 25 C 1.38428 * 120.00191 * 161.68951 * 19 17 16 26 26 F 1.35101 * 119.99603 * 0.02562 * 25 19 17 27 27 C 1.34761 * 124.17946 * 269.99087 * 13 12 2 28 28 O 1.21234 * 127.15567 * 0.07454 * 27 13 12 29 29 H 1.08998 * 109.47180 * 309.48477 * 1 2 3 30 30 H 1.08995 * 109.47204 * 69.48463 * 1 2 3 31 31 H 1.09005 * 109.47455 * 189.48257 * 1 2 3 32 32 H 1.09000 * 109.47400 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47033 * 300.00630 * 3 2 1 34 34 H 1.09002 * 109.46842 * 59.99969 * 3 2 1 35 35 H 0.96993 * 120.00340 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.46771 * 179.97438 * 12 2 1 37 37 H 1.09003 * 109.47321 * 59.99462 * 12 2 1 38 38 H 0.97003 * 126.69235 * 180.02562 * 16 14 13 39 39 H 1.07996 * 119.99873 * 0.05668 * 20 19 17 40 40 H 1.07994 * 120.00216 * 180.02562 * 23 21 20 41 41 H 1.08001 * 119.99570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6371 -1.5997 -1.1316 6 6 1.7197 -0.2251 -2.4827 7 7 1.9095 -0.9763 -3.5453 8 14 1.0265 1.4994 -2.6696 9 1 2.1416 2.4791 -2.7138 10 1 0.2429 1.5841 -3.9282 11 1 0.1438 1.8059 -1.5154 12 6 2.0400 -0.7214 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 0.3977 -0.3158 3.0594 15 8 -0.3701 -1.1811 2.6867 16 7 0.1820 0.4625 4.1352 17 6 1.3388 1.3689 4.2381 18 1 1.8650 1.2137 5.1799 19 6 0.9003 2.8049 4.1082 20 6 -0.3281 3.1046 3.5500 21 6 -0.7306 4.4236 3.4302 22 9 -1.9315 4.7165 2.8850 23 6 0.0971 5.4428 3.8702 24 6 1.3246 5.1431 4.4292 25 6 1.7298 3.8240 4.5434 26 9 2.9328 3.5313 5.0842 27 6 2.2099 0.9696 3.0637 28 8 3.2765 1.4505 2.7462 29 1 -0.3633 0.6535 0.7931 30 1 -0.3633 0.3601 -0.9624 31 1 -0.3634 -1.0136 0.1693 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6892 -0.6350 -4.4261 36 1 3.1300 -0.7217 1.2489 37 1 1.6766 -1.7490 1.2492 38 1 -0.5852 0.4323 4.7280 39 1 -0.9740 2.3096 3.2077 40 1 -0.2170 6.4718 3.7771 41 1 1.9700 5.9380 4.7727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842259552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:32 Heat of formation + Delta-G solvation = -77.995813 kcal Electronic energy + Delta-G solvation = -30961.803010 eV Core-core repulsion = 26480.016373 eV Total energy + Delta-G solvation = -4481.786637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.25105 -49.22120 -42.49435 -39.24886 -38.40814 -36.78840 -36.01373 -33.94162 -31.92456 -31.41674 -30.54813 -27.65642 -26.58083 -26.30274 -24.87995 -23.63463 -22.97665 -22.07415 -20.98967 -18.95593 -18.36165 -17.93389 -17.69735 -17.42714 -16.78329 -16.43209 -16.11842 -16.01129 -15.63232 -15.33347 -15.18548 -14.96041 -14.75487 -14.65831 -14.11612 -14.04582 -13.90183 -13.35987 -13.16714 -12.91894 -12.80011 -12.75809 -12.33087 -12.13859 -11.90992 -11.57760 -11.06860 -11.04155 -10.92179 -10.28500 -10.24082 -10.08015 -9.90910 -9.75113 -9.49949 -9.42073 -9.09592 -8.91146 -8.54823 -8.42247 -6.13600 -4.10569 0.43106 0.57788 1.69065 2.35746 2.85622 3.08558 3.19646 3.28614 3.37313 3.41549 3.64901 3.76062 3.91437 4.04020 4.28104 4.39090 4.47624 4.61611 4.80364 5.11945 5.18387 5.30040 5.48329 5.54835 5.59613 5.62929 5.79963 5.82786 5.91292 6.10065 6.32584 6.39617 6.45128 6.57853 6.65717 6.69466 6.73943 7.01931 7.20265 7.24938 7.48888 7.51561 7.74039 8.24192 8.43521 8.89022 9.51122 10.99206 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.004820 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.762770 B = 5808.276263 C = 6441.058658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.026 3.974 3 C -0.141 4.141 4 C -0.512 4.512 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.882 3.118 9 H -0.285 1.285 10 H -0.304 1.304 11 H -0.250 1.250 12 C 0.138 3.862 13 N -0.564 5.564 14 C 0.702 3.298 15 O -0.525 6.525 16 N -0.730 5.730 17 C 0.136 3.864 18 H 0.139 0.861 19 C -0.107 4.107 20 C -0.105 4.105 21 C 0.093 3.907 22 F -0.131 7.131 23 C -0.116 4.116 24 C -0.124 4.124 25 C 0.118 3.882 26 F -0.123 7.123 27 C 0.527 3.473 28 O -0.450 6.450 29 H 0.013 0.987 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.439 0.561 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 11.709 20.854 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.025 3.975 3 C -0.198 4.198 4 C -0.550 4.550 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.177 1.177 12 C 0.019 3.981 13 N -0.309 5.309 14 C 0.403 3.597 15 O -0.397 6.397 16 N -0.396 5.396 17 C 0.026 3.974 18 H 0.156 0.844 19 C -0.109 4.109 20 C -0.124 4.124 21 C 0.073 3.927 22 F -0.109 7.109 23 C -0.135 4.135 24 C -0.143 4.143 25 C 0.097 3.903 26 F -0.101 7.101 27 C 0.312 3.688 28 O -0.318 6.318 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.283 0.717 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.320 11.367 20.143 23.366 hybrid contribution -0.690 1.099 -0.025 1.298 sum -4.010 12.466 20.117 24.004 Atomic orbital electron populations 1.22239 0.97280 1.00305 0.99290 1.18844 0.92990 0.92354 0.93338 1.22323 1.01229 0.98079 0.98120 1.20626 1.34143 1.12354 0.87860 0.90438 1.24904 0.94497 0.97145 0.95770 1.69936 1.48118 1.35811 0.98757 0.87339 0.79431 0.85775 0.75994 1.21305 1.23313 1.17652 1.22097 0.99600 0.96321 0.80110 1.46600 1.20381 1.34882 1.29020 1.15895 0.81933 0.81992 0.79914 1.91032 1.47824 1.33355 1.67524 1.45544 1.24450 1.37855 1.31771 1.20727 0.88115 0.87191 1.01330 0.84410 1.19366 0.95236 0.93375 1.02944 1.20903 0.96465 0.96054 0.98980 1.17570 0.82815 0.93233 0.99046 1.91552 1.42121 1.94003 1.83252 1.21091 0.93617 0.99867 0.98908 1.20992 0.97080 0.95006 1.01172 1.17351 0.81904 0.92949 0.98059 1.91566 1.41577 1.94053 1.82889 1.20357 0.85562 0.79534 0.83343 1.90825 1.19123 1.54713 1.67129 0.96834 0.92910 0.92590 0.92483 0.94210 0.96081 0.92538 0.89143 0.88797 0.71702 0.83298 0.83323 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 6.51 37.16 0.24 -2.80 16 2 C 0.03 0.61 0.57 -155.66 -0.09 0.52 16 3 C -0.14 -3.17 6.70 37.15 0.25 -2.92 16 4 C -0.51 -13.92 8.62 -34.44 -0.30 -14.21 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.27 5.32 -17.82 -0.09 2.17 16 7 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 8 Si 0.88 22.17 22.79 -169.99 -3.87 18.30 16 9 H -0.29 -7.16 7.10 56.52 0.40 -6.75 16 10 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 11 H -0.25 -5.95 4.65 56.52 0.26 -5.69 16 12 C 0.14 2.71 4.66 -4.04 -0.02 2.69 16 13 N -0.56 -9.47 2.16 -120.73 -0.26 -9.73 16 14 C 0.70 10.91 7.23 -88.02 -0.64 10.27 16 15 O -0.53 -9.84 16.09 5.33 0.09 -9.75 16 16 N -0.73 -7.79 4.90 -60.33 -0.30 -8.09 16 17 C 0.14 1.49 3.64 -69.36 -0.25 1.24 16 18 H 0.14 1.13 7.96 -51.93 -0.41 0.72 16 19 C -0.11 -1.14 5.16 -104.56 -0.54 -1.68 16 20 C -0.10 -1.14 9.34 -39.52 -0.37 -1.51 16 21 C 0.09 0.96 7.30 -39.42 -0.29 0.68 16 22 F -0.13 -1.50 17.27 2.25 0.04 -1.46 16 23 C -0.12 -0.95 10.02 -39.52 -0.40 -1.34 16 24 C -0.12 -1.00 10.02 -39.52 -0.40 -1.39 16 25 C 0.12 1.19 7.24 -39.43 -0.29 0.91 16 26 F -0.12 -1.34 16.67 2.25 0.04 -1.30 16 27 C 0.53 8.12 5.98 -10.56 -0.06 8.06 16 28 O -0.45 -8.02 16.87 5.60 0.09 -7.93 16 29 H 0.01 0.27 6.97 -51.93 -0.36 -0.09 16 30 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 31 H 0.06 1.29 7.56 -51.93 -0.39 0.90 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.04 0.94 2.26 -51.93 -0.12 0.82 16 34 H 0.02 0.42 6.19 -51.93 -0.32 0.10 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 1.74 8.01 -51.93 -0.42 1.33 16 37 H 0.09 1.86 7.86 -51.93 -0.41 1.45 16 38 H 0.44 3.30 8.96 -40.82 -0.37 2.93 16 39 H 0.15 1.65 7.16 -52.49 -0.38 1.28 16 40 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -32.97 335.65 -5.93 -38.90 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.36 Total: 1.44 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -3.23 Total: 0.68 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.22 Total: -43.93 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.18 Total: -17.68 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.08 Total: -2.76 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -3.87 Total: 18.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.97 -5.93 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842259552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.096 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds