Wall clock time and date at job start Tue Mar 31 2020 21:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47406 * 2 1 4 4 C 1.50707 * 109.46982 * 239.99929 * 2 1 3 5 5 H 1.08001 * 120.00104 * 241.19976 * 4 2 1 6 6 C 1.37881 * 119.99831 * 61.19772 * 4 2 1 7 7 N 1.31511 * 120.00229 * 194.18516 * 6 4 2 8 8 Si 1.86805 * 119.99799 * 14.18510 * 6 4 2 9 9 H 1.48498 * 109.47127 * 84.54031 * 8 6 4 10 10 H 1.48498 * 109.46723 * 204.54155 * 8 6 4 11 11 H 1.48499 * 109.46997 * 324.53886 * 8 6 4 12 12 C 1.53001 * 109.47156 * 120.00457 * 2 1 3 13 13 N 1.46502 * 109.47090 * 299.99410 * 12 2 1 14 14 C 1.33790 * 124.17377 * 90.02610 * 13 12 2 15 15 O 1.21538 * 123.77625 * 359.96287 * 14 13 12 16 16 N 1.34526 * 112.45704 * 179.97438 * 14 13 12 17 17 C 1.47316 * 106.61701 * 359.97438 * 16 14 13 18 18 H 1.08994 * 110.60111 * 241.31695 * 17 16 14 19 19 C 1.50702 * 110.59439 * 118.53184 * 17 16 14 20 20 C 1.38213 * 120.00082 * 341.44728 * 19 17 16 21 21 C 1.38431 * 119.99786 * 180.02562 * 20 19 17 22 22 F 1.35102 * 119.99771 * 180.02562 * 21 20 19 23 23 C 1.38473 * 120.00165 * 359.97438 * 21 20 19 24 24 C 1.38165 * 119.99735 * 359.97340 * 23 21 20 25 25 C 1.38428 * 120.00191 * 161.68951 * 19 17 16 26 26 F 1.35101 * 119.99603 * 0.02562 * 25 19 17 27 27 C 1.34761 * 124.17946 * 269.99087 * 13 12 2 28 28 O 1.21234 * 127.15567 * 0.07454 * 27 13 12 29 29 H 1.08998 * 109.47180 * 309.48477 * 1 2 3 30 30 H 1.08995 * 109.47204 * 69.48463 * 1 2 3 31 31 H 1.09005 * 109.47455 * 189.48257 * 1 2 3 32 32 H 1.09000 * 109.47400 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47033 * 300.00630 * 3 2 1 34 34 H 1.09002 * 109.46842 * 59.99969 * 3 2 1 35 35 H 0.96993 * 120.00340 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.46771 * 179.97438 * 12 2 1 37 37 H 1.09003 * 109.47321 * 59.99462 * 12 2 1 38 38 H 0.97003 * 126.69235 * 180.02562 * 16 14 13 39 39 H 1.07996 * 119.99873 * 0.05668 * 20 19 17 40 40 H 1.07994 * 120.00216 * 180.02562 * 23 21 20 41 41 H 1.08001 * 119.99570 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6371 -1.5997 -1.1316 6 6 1.7197 -0.2251 -2.4827 7 7 1.9095 -0.9763 -3.5453 8 14 1.0265 1.4994 -2.6696 9 1 2.1416 2.4791 -2.7138 10 1 0.2429 1.5841 -3.9282 11 1 0.1438 1.8059 -1.5154 12 6 2.0400 -0.7214 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 0.3977 -0.3158 3.0594 15 8 -0.3701 -1.1811 2.6867 16 7 0.1820 0.4625 4.1352 17 6 1.3388 1.3689 4.2381 18 1 1.8650 1.2137 5.1799 19 6 0.9003 2.8049 4.1082 20 6 -0.3281 3.1046 3.5500 21 6 -0.7306 4.4236 3.4302 22 9 -1.9315 4.7165 2.8850 23 6 0.0971 5.4428 3.8702 24 6 1.3246 5.1431 4.4292 25 6 1.7298 3.8240 4.5434 26 9 2.9328 3.5313 5.0842 27 6 2.2099 0.9696 3.0637 28 8 3.2765 1.4505 2.7462 29 1 -0.3633 0.6535 0.7931 30 1 -0.3633 0.3601 -0.9624 31 1 -0.3634 -1.0136 0.1693 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6892 -0.6350 -4.4261 36 1 3.1300 -0.7217 1.2489 37 1 1.6766 -1.7490 1.2492 38 1 -0.5852 0.4323 4.7280 39 1 -0.9740 2.3096 3.2077 40 1 -0.2170 6.4718 3.7771 41 1 1.9700 5.9380 4.7727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842259552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:31 Heat of formation + Delta-G solvation = -100.194066 kcal Electronic energy + Delta-G solvation = -30962.765599 eV Core-core repulsion = 26480.016373 eV Total energy + Delta-G solvation = -4482.749226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01997 -50.01279 -43.69525 -40.07648 -39.66768 -38.41267 -37.27173 -35.37661 -33.70626 -32.53511 -31.28588 -28.84732 -28.16060 -27.86871 -26.98618 -24.57109 -23.83250 -23.15414 -22.28773 -20.57115 -19.24587 -19.01230 -18.50720 -18.38723 -18.25182 -17.90897 -17.50236 -16.96940 -16.90094 -16.49758 -16.43070 -16.24809 -15.64958 -15.47759 -15.26145 -15.16326 -15.05705 -14.93003 -14.71558 -14.53179 -14.08704 -13.99884 -13.80902 -13.66734 -13.10112 -12.80671 -12.76088 -12.54731 -12.29373 -12.06485 -12.04444 -11.76408 -11.40527 -11.17503 -11.06842 -10.74898 -10.63614 -10.31766 -10.23236 -9.66762 -8.34825 -6.34307 -0.30895 -0.13528 0.50760 1.18496 1.28093 1.31254 1.40825 1.92633 1.98789 2.20721 2.28392 2.84198 2.91012 3.00943 3.05759 3.25609 3.53844 3.75095 3.89818 3.95518 4.01646 4.12795 4.23947 4.36965 4.43786 4.52418 4.63301 4.67956 4.78312 4.81182 4.83712 4.85582 4.88744 4.91681 4.97262 5.17103 5.34105 5.60214 5.62918 5.68664 5.76417 6.04925 6.23595 6.31382 6.68429 7.07009 7.30091 8.81553 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012421 B = 0.004820 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.762770 B = 5808.276263 C = 6441.058658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.023 3.977 3 C -0.132 4.132 4 C -0.510 4.510 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.936 5.936 8 Si 0.932 3.068 9 H -0.281 1.281 10 H -0.309 1.309 11 H -0.227 1.227 12 C 0.147 3.853 13 N -0.572 5.572 14 C 0.701 3.299 15 O -0.561 6.561 16 N -0.701 5.701 17 C 0.151 3.849 18 H 0.174 0.826 19 C -0.117 4.117 20 C -0.114 4.114 21 C 0.077 3.923 22 F -0.141 7.141 23 C -0.103 4.103 24 C -0.114 4.114 25 C 0.110 3.890 26 F -0.128 7.128 27 C 0.521 3.479 28 O -0.476 6.476 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.456 0.544 39 H 0.143 0.857 40 H 0.178 0.822 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 14.607 23.493 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.022 3.978 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.064 0.936 6 C -0.170 4.170 7 N -0.575 5.575 8 Si 0.763 3.237 9 H -0.209 1.209 10 H -0.238 1.238 11 H -0.152 1.152 12 C 0.027 3.973 13 N -0.317 5.317 14 C 0.402 3.598 15 O -0.436 6.436 16 N -0.368 5.368 17 C 0.042 3.958 18 H 0.191 0.809 19 C -0.120 4.120 20 C -0.134 4.134 21 C 0.057 3.943 22 F -0.119 7.119 23 C -0.121 4.121 24 C -0.133 4.133 25 C 0.090 3.910 26 F -0.107 7.107 27 C 0.308 3.692 28 O -0.346 6.346 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.304 0.696 39 H 0.160 0.840 40 H 0.195 0.805 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.953 14.300 22.861 27.253 hybrid contribution -0.442 0.181 -0.778 0.913 sum -4.396 14.481 22.083 26.771 Atomic orbital electron populations 1.22086 0.96744 1.00132 0.99133 1.18797 0.93234 0.92780 0.93024 1.22188 1.00826 0.97352 0.98517 1.20904 1.32811 1.11385 0.89710 0.93612 1.25627 0.95289 1.00544 0.95555 1.70059 1.50413 1.37714 0.99344 0.86496 0.79278 0.81495 0.76437 1.20874 1.23776 1.15170 1.21647 0.99455 0.95858 0.80389 1.46528 1.21267 1.35419 1.28457 1.15958 0.81179 0.82077 0.80634 1.91018 1.48775 1.35061 1.68738 1.45343 1.24897 1.36303 1.30212 1.20761 0.87111 0.87415 1.00520 0.80881 1.19257 0.95559 0.92945 1.04192 1.20883 0.96612 0.96372 0.99484 1.17811 0.82943 0.93706 0.99794 1.91529 1.42819 1.94045 1.83555 1.21424 0.92898 1.00746 0.97076 1.21339 0.97170 0.94876 0.99875 1.17567 0.81604 0.93698 0.98169 1.91558 1.41923 1.94175 1.82999 1.21046 0.85507 0.78583 0.84074 1.90811 1.20345 1.55313 1.68131 0.94861 0.94189 0.93585 0.93093 0.95099 0.94079 0.92543 0.89228 0.89575 0.69565 0.83964 0.80485 0.80112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 6.51 71.98 0.47 -5.05 16 2 C 0.02 1.06 0.57 -52.93 -0.03 1.03 16 3 C -0.13 -5.75 6.70 71.98 0.48 -5.27 16 4 C -0.51 -28.41 8.62 25.60 0.22 -28.19 16 5 H 0.05 2.77 7.99 -2.91 -0.02 2.75 16 6 C 0.03 1.64 5.32 84.66 0.45 2.09 16 7 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 8 Si 0.93 45.65 22.79 68.60 1.56 47.21 16 9 H -0.28 -13.51 7.10 99.48 0.71 -12.81 16 10 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 11 H -0.23 -10.18 4.65 99.48 0.46 -9.72 16 12 C 0.15 5.81 4.66 86.38 0.40 6.21 16 13 N -0.57 -18.52 2.16 -773.13 -1.67 -20.18 16 14 C 0.70 20.71 7.23 179.44 1.30 22.00 16 15 O -0.56 -20.60 16.09 -3.84 -0.06 -20.66 16 16 N -0.70 -13.11 4.90 -463.21 -2.27 -15.38 16 17 C 0.15 2.85 3.64 43.62 0.16 3.01 16 18 H 0.17 2.14 7.96 -2.39 -0.02 2.12 16 19 C -0.12 -2.14 5.16 -19.82 -0.10 -2.24 16 20 C -0.11 -2.17 9.34 22.31 0.21 -1.96 16 21 C 0.08 1.37 7.30 22.37 0.16 1.53 16 22 F -0.14 -2.92 17.27 44.97 0.78 -2.14 16 23 C -0.10 -1.26 10.02 22.31 0.22 -1.03 16 24 C -0.11 -1.35 10.02 22.31 0.22 -1.13 16 25 C 0.11 1.84 7.24 22.37 0.16 2.00 16 26 F -0.13 -2.38 16.67 44.97 0.75 -1.64 16 27 C 0.52 15.01 5.98 87.94 0.53 15.54 16 28 O -0.48 -16.22 16.87 -2.89 -0.05 -16.27 16 29 H 0.03 1.32 6.97 -2.39 -0.02 1.30 16 30 H 0.04 1.86 4.30 -2.39 -0.01 1.85 16 31 H 0.05 2.12 7.56 -2.38 -0.02 2.10 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.03 1.40 2.26 -2.38 -0.01 1.39 16 34 H 0.04 1.60 6.19 -2.39 -0.01 1.58 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.09 3.51 8.01 -2.39 -0.02 3.49 16 37 H 0.09 3.50 7.86 -2.39 -0.02 3.48 16 38 H 0.46 5.51 8.96 -92.71 -0.83 4.68 16 39 H 0.14 2.83 7.16 -2.91 -0.02 2.81 16 40 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -73.02 335.65 4.24 -68.78 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.04 Total: 9.73 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 4.85 Total: 8.54 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.64 Total: -93.56 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.11 Total: -36.93 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 1.53 Total: -3.78 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.56 Total: 47.21 kcal Total: -73.02 4.24 -68.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842259552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.419 kcal (2) G-P(sol) polarization free energy of solvation -73.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds