Wall clock time and date at job start Tue Mar 31 2020 21:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46703 * 2 1 4 4 N 1.46494 * 109.47486 * 119.99517 * 2 1 3 5 5 C 1.34779 * 120.00637 * 296.55853 * 4 2 1 6 6 O 1.21281 * 119.99582 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00369 * 179.97438 * 5 4 2 8 8 F 1.39899 * 109.47060 * 180.02562 * 7 5 4 9 9 F 1.39892 * 109.47244 * 300.00401 * 7 5 4 10 10 F 1.39907 * 109.46692 * 60.00184 * 7 5 4 11 11 C 1.50699 * 109.47173 * 240.00377 * 2 1 3 12 12 O 1.21272 * 120.00385 * 18.15260 * 11 2 1 13 13 N 1.34782 * 119.99457 * 198.15577 * 11 2 1 14 14 C 1.47029 * 125.64280 * 184.31713 * 13 11 2 15 15 C 1.54327 * 107.26227 * 178.84788 * 14 13 11 16 16 C 1.55155 * 103.02345 * 338.13791 * 15 14 13 17 17 O 1.42905 * 111.03776 * 277.21841 * 16 15 14 18 18 C 1.50699 * 111.00677 * 153.38300 * 16 15 14 19 19 H 1.08001 * 120.00245 * 242.56758 * 18 16 15 20 20 C 1.37879 * 119.99870 * 62.56539 * 18 16 15 21 21 N 1.31515 * 120.00044 * 4.39652 * 20 18 16 22 22 Si 1.86805 * 119.99846 * 184.39687 * 20 18 16 23 23 H 1.48498 * 109.46963 * 94.99432 * 22 20 18 24 24 H 1.48502 * 109.46908 * 214.99179 * 22 20 18 25 25 H 1.48503 * 109.47142 * 334.99503 * 22 20 18 26 26 C 1.47420 * 125.65354 * 4.61659 * 13 11 2 27 27 H 1.09007 * 109.46520 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47304 * 60.00415 * 1 2 3 29 29 H 1.08997 * 109.47341 * 299.99589 * 1 2 3 30 30 H 1.08997 * 109.46886 * 60.00133 * 3 2 1 31 31 H 1.08995 * 109.46843 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46902 * 299.99831 * 3 2 1 33 33 H 0.97002 * 120.00046 * 116.54983 * 4 2 1 34 34 H 1.09003 * 109.87819 * 298.38903 * 14 13 11 35 35 H 1.08996 * 109.88261 * 59.55859 * 14 13 11 36 36 H 1.09000 * 110.85247 * 219.66871 * 15 14 13 37 37 H 1.08996 * 110.51840 * 96.45115 * 15 14 13 38 38 H 0.96700 * 113.99946 * 292.21825 * 17 16 15 39 39 H 0.97004 * 119.99414 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.36863 * 322.93667 * 26 13 11 41 41 H 1.09002 * 110.36273 * 85.14800 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.7511 -0.1910 2.4191 6 8 1.1066 0.8305 2.5293 7 6 2.2531 -0.9016 3.6496 8 9 1.8522 -0.1982 4.7905 9 9 1.7228 -2.1955 3.6897 10 9 3.6499 -0.9710 3.6107 11 6 2.0323 -0.7103 -1.2305 12 8 1.2936 -0.8791 -2.1773 13 7 3.3027 -1.1581 -1.2786 14 6 3.9470 -1.7840 -2.4426 15 6 5.4026 -2.1049 -2.0427 16 6 5.6618 -1.1357 -0.8591 17 8 6.0270 0.1631 -1.3301 18 6 6.7138 -1.6859 0.0691 19 1 6.4626 -1.9164 1.0939 20 6 7.9970 -1.8951 -0.3899 21 7 8.3255 -1.5344 -1.6112 22 14 9.2690 -2.6909 0.7230 23 1 9.3151 -4.1511 0.4570 24 1 10.6030 -2.0964 0.4542 25 1 8.8999 -2.4577 2.1424 26 6 4.2743 -1.1070 -0.1711 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5137 0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 2.5341 -1.5073 1.1081 34 1 3.4223 -2.7020 -2.7076 35 1 3.9398 -1.0937 -3.2860 36 1 6.0858 -1.8987 -2.8667 37 1 5.4900 -3.1418 -1.7183 38 1 6.8884 0.1948 -1.7683 39 1 9.2284 -1.6813 -1.9339 40 1 4.1523 -0.1858 0.3985 41 1 4.1537 -1.9732 0.4795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844020132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:47 Heat of formation + Delta-G solvation = -254.509754 kcal Electronic energy + Delta-G solvation = -32209.515787 eV Core-core repulsion = 27289.305706 eV Total energy + Delta-G solvation = -4920.210081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.44294 -47.97252 -47.91915 -41.07879 -39.40677 -37.61606 -35.88966 -34.44218 -32.32494 -32.19575 -30.14243 -28.57564 -27.70888 -27.29152 -25.39561 -24.20426 -22.20608 -20.86414 -20.28850 -19.70201 -18.89978 -18.87247 -18.42941 -17.50934 -16.99865 -16.20121 -15.97790 -15.31635 -15.10897 -15.02460 -14.79060 -14.66468 -14.61154 -14.32587 -14.21481 -14.03805 -14.02810 -13.85380 -13.60223 -13.24356 -13.04975 -12.77918 -12.46761 -12.38613 -12.14348 -12.01048 -11.78262 -11.50237 -11.37343 -11.35730 -10.95688 -10.73630 -10.60532 -10.50631 -10.20193 -9.82852 -9.62374 -9.39793 -8.79898 -8.37987 -8.28515 -6.42751 -4.51799 1.55873 1.63051 2.58559 2.99568 3.11169 3.14678 3.20663 3.24135 3.47935 3.88887 3.97535 4.14281 4.39127 4.81465 4.84263 4.85331 5.28609 5.37719 5.57687 5.63717 5.67256 5.69888 5.77046 5.79883 6.01569 6.02156 6.07551 6.10372 6.22147 6.34569 6.66785 6.74779 6.76749 7.14433 7.19234 7.28876 7.59587 7.75530 7.81790 8.24381 8.50801 9.16406 9.28635 10.64765 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.005144 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.469340 B = 5442.048080 C = 7230.139027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.164 3.836 3 C -0.168 4.168 4 N -0.693 5.693 5 C 0.490 3.510 6 O -0.474 6.474 7 C 0.449 3.551 8 F -0.154 7.154 9 F -0.168 7.168 10 F -0.159 7.159 11 C 0.526 3.474 12 O -0.537 6.537 13 N -0.602 5.602 14 C 0.107 3.893 15 C -0.139 4.139 16 C 0.253 3.747 17 O -0.584 6.584 18 C -0.542 4.542 19 H 0.067 0.933 20 C 0.075 3.925 21 N -0.893 5.893 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.271 1.271 26 C 0.099 3.901 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.414 0.586 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.387 0.613 39 H 0.270 0.730 40 H 0.078 0.922 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.833 0.186 5.532 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.077 3.923 3 C -0.225 4.225 4 N -0.351 5.351 5 C 0.268 3.732 6 O -0.346 6.346 7 C 0.391 3.609 8 F -0.136 7.136 9 F -0.150 7.150 10 F -0.140 7.140 11 C 0.312 3.688 12 O -0.414 6.414 13 N -0.334 5.334 14 C -0.015 4.015 15 C -0.178 4.178 16 C 0.212 3.788 17 O -0.394 6.394 18 C -0.580 4.580 19 H 0.085 0.915 20 C -0.128 4.128 21 N -0.531 5.531 22 Si 0.729 3.271 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.023 4.023 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.239 0.761 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.180 1.002 5.213 12.376 hybrid contribution 1.831 -1.266 0.485 2.279 sum -9.348 -0.264 5.697 10.951 Atomic orbital electron populations 1.22027 0.90960 1.03400 1.04132 1.20806 0.96463 0.94129 0.80941 1.22295 1.02913 0.92595 1.04746 1.46397 1.54979 1.29222 1.04472 1.20224 0.82410 0.86316 0.84269 1.90799 1.37025 1.21879 1.84880 1.20269 0.76862 0.77839 0.85962 1.93260 1.90348 1.78389 1.51565 1.93263 1.86113 1.38844 1.96764 1.93343 1.28072 1.96033 1.96549 1.19856 0.81054 0.79197 0.88677 1.90696 1.55549 1.57205 1.37990 1.48719 1.10687 1.58014 1.15973 1.22125 0.94932 0.96441 0.87960 1.23231 0.91579 1.01099 1.01864 1.19523 0.88577 0.81173 0.89504 1.86072 1.42496 1.31235 1.79633 1.21426 0.94651 1.44078 0.97841 0.91514 1.24983 0.98392 0.94245 0.95201 1.69633 1.20607 1.46576 1.16324 0.86405 0.80375 0.79381 0.80901 1.20423 1.20963 1.19530 1.22766 0.89665 1.00817 0.89094 0.91836 0.89935 0.90190 0.88985 0.90616 0.90499 0.74567 0.92490 0.92072 0.89475 0.91277 0.76117 0.91966 0.90379 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.90 37.16 0.29 -1.58 16 2 C 0.16 2.31 0.64 -132.97 -0.08 2.23 16 3 C -0.17 -2.33 8.22 37.16 0.31 -2.02 16 4 N -0.69 -9.00 3.66 -48.68 -0.18 -9.18 16 5 C 0.49 6.37 6.78 -10.99 -0.07 6.30 16 6 O -0.47 -6.85 12.83 5.56 0.07 -6.78 16 7 C 0.45 5.47 3.43 36.00 0.12 5.59 16 8 F -0.15 -1.95 16.92 2.25 0.04 -1.91 16 9 F -0.17 -1.92 17.30 2.25 0.04 -1.88 16 10 F -0.16 -2.07 17.30 2.25 0.04 -2.03 16 11 C 0.53 8.88 6.68 -10.98 -0.07 8.81 16 12 O -0.54 -10.32 16.35 5.56 0.09 -10.22 16 13 N -0.60 -10.54 3.30 -170.52 -0.56 -11.11 16 14 C 0.11 1.95 6.88 -3.06 -0.02 1.92 16 15 C -0.14 -2.79 5.49 -24.90 -0.14 -2.92 16 16 C 0.25 5.44 0.89 -89.63 -0.08 5.36 16 17 O -0.58 -13.54 13.19 -35.23 -0.46 -14.01 16 18 C -0.54 -12.74 8.26 -34.44 -0.28 -13.02 16 19 H 0.07 1.55 7.79 -52.49 -0.41 1.14 16 20 C 0.08 1.79 5.26 -17.82 -0.09 1.70 16 21 N -0.89 -21.59 10.76 55.43 0.60 -20.99 16 22 Si 0.90 18.95 29.54 -169.99 -5.02 13.93 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C 0.10 1.77 4.29 -2.53 -0.01 1.76 16 27 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 29 H 0.08 0.99 6.42 -51.93 -0.33 0.65 16 30 H 0.09 1.25 5.92 -51.93 -0.31 0.95 16 31 H 0.07 1.16 6.64 -51.93 -0.34 0.82 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.41 5.18 5.69 -40.82 -0.23 4.95 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.87 7.70 -51.93 -0.40 1.47 16 37 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 38 H 0.39 9.25 7.20 45.56 0.33 9.58 16 39 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 40 H 0.08 1.38 5.44 -51.93 -0.28 1.10 16 41 H 0.07 1.17 6.91 -51.93 -0.36 0.81 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -25.68 343.72 -4.30 -29.99 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -3.99 Total: 14.89 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -0.14 Total: 14.12 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.15 Total: -41.28 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.30 Total: -31.01 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.12 Total: -5.82 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -25.68 -4.30 -29.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844020132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -224.524 kcal (2) G-P(sol) polarization free energy of solvation -25.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds