Wall clock time and date at job start Tue Mar 31 2020 21:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46703 * 2 1 4 4 N 1.46494 * 109.47486 * 119.99517 * 2 1 3 5 5 C 1.34779 * 120.00637 * 296.55853 * 4 2 1 6 6 O 1.21281 * 119.99582 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00369 * 179.97438 * 5 4 2 8 8 F 1.39899 * 109.47060 * 180.02562 * 7 5 4 9 9 F 1.39892 * 109.47244 * 300.00401 * 7 5 4 10 10 F 1.39907 * 109.46692 * 60.00184 * 7 5 4 11 11 C 1.50699 * 109.47173 * 240.00377 * 2 1 3 12 12 O 1.21272 * 120.00385 * 18.15260 * 11 2 1 13 13 N 1.34782 * 119.99457 * 198.15577 * 11 2 1 14 14 C 1.47029 * 125.64280 * 184.31713 * 13 11 2 15 15 C 1.54327 * 107.26227 * 178.84788 * 14 13 11 16 16 C 1.55155 * 103.02345 * 338.13791 * 15 14 13 17 17 O 1.42905 * 111.03776 * 277.21841 * 16 15 14 18 18 C 1.50699 * 111.00677 * 153.38300 * 16 15 14 19 19 H 1.08001 * 120.00245 * 242.56758 * 18 16 15 20 20 C 1.37879 * 119.99870 * 62.56539 * 18 16 15 21 21 N 1.31515 * 120.00044 * 4.39652 * 20 18 16 22 22 Si 1.86805 * 119.99846 * 184.39687 * 20 18 16 23 23 H 1.48498 * 109.46963 * 94.99432 * 22 20 18 24 24 H 1.48502 * 109.46908 * 214.99179 * 22 20 18 25 25 H 1.48503 * 109.47142 * 334.99503 * 22 20 18 26 26 C 1.47420 * 125.65354 * 4.61659 * 13 11 2 27 27 H 1.09007 * 109.46520 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47304 * 60.00415 * 1 2 3 29 29 H 1.08997 * 109.47341 * 299.99589 * 1 2 3 30 30 H 1.08997 * 109.46886 * 60.00133 * 3 2 1 31 31 H 1.08995 * 109.46843 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46902 * 299.99831 * 3 2 1 33 33 H 0.97002 * 120.00046 * 116.54983 * 4 2 1 34 34 H 1.09003 * 109.87819 * 298.38903 * 14 13 11 35 35 H 1.08996 * 109.88261 * 59.55859 * 14 13 11 36 36 H 1.09000 * 110.85247 * 219.66871 * 15 14 13 37 37 H 1.08996 * 110.51840 * 96.45115 * 15 14 13 38 38 H 0.96700 * 113.99946 * 292.21825 * 17 16 15 39 39 H 0.97004 * 119.99414 * 179.97438 * 21 20 18 40 40 H 1.08994 * 110.36863 * 322.93667 * 26 13 11 41 41 H 1.09002 * 110.36273 * 85.14800 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.7511 -0.1910 2.4191 6 8 1.1066 0.8305 2.5293 7 6 2.2531 -0.9016 3.6496 8 9 1.8522 -0.1982 4.7905 9 9 1.7228 -2.1955 3.6897 10 9 3.6499 -0.9710 3.6107 11 6 2.0323 -0.7103 -1.2305 12 8 1.2936 -0.8791 -2.1773 13 7 3.3027 -1.1581 -1.2786 14 6 3.9470 -1.7840 -2.4426 15 6 5.4026 -2.1049 -2.0427 16 6 5.6618 -1.1357 -0.8591 17 8 6.0270 0.1631 -1.3301 18 6 6.7138 -1.6859 0.0691 19 1 6.4626 -1.9164 1.0939 20 6 7.9970 -1.8951 -0.3899 21 7 8.3255 -1.5344 -1.6112 22 14 9.2690 -2.6909 0.7230 23 1 9.3151 -4.1511 0.4570 24 1 10.6030 -2.0964 0.4542 25 1 8.8999 -2.4577 2.1424 26 6 4.2743 -1.1070 -0.1711 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5137 0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 2.5341 -1.5073 1.1081 34 1 3.4223 -2.7020 -2.7076 35 1 3.9398 -1.0937 -3.2860 36 1 6.0858 -1.8987 -2.8667 37 1 5.4900 -3.1418 -1.7183 38 1 6.8884 0.1948 -1.7683 39 1 9.2284 -1.6813 -1.9339 40 1 4.1523 -0.1858 0.3985 41 1 4.1537 -1.9732 0.4795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844020132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:46 Heat of formation + Delta-G solvation = -271.790816 kcal Electronic energy + Delta-G solvation = -32210.265150 eV Core-core repulsion = 27289.305706 eV Total energy + Delta-G solvation = -4920.959444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.42825 -48.93413 -48.92572 -42.29370 -40.69112 -39.15864 -37.07800 -36.07730 -34.14474 -33.30407 -31.69291 -30.14269 -28.74014 -28.38212 -27.06125 -25.55179 -23.47501 -22.08002 -21.81164 -20.96888 -19.98119 -19.85883 -19.61828 -19.10590 -18.41576 -17.39846 -17.28462 -16.90346 -16.48173 -16.34458 -16.10626 -15.78273 -15.62824 -15.62260 -15.32260 -15.30465 -15.02066 -15.01291 -14.76956 -14.64685 -14.44988 -14.13843 -13.83304 -13.67475 -13.56315 -13.27542 -13.16130 -12.99014 -12.91752 -12.59646 -12.51687 -12.43353 -12.25058 -11.89013 -11.68161 -11.35855 -10.89669 -10.73133 -10.56018 -10.13516 -9.74079 -8.22750 -6.36797 0.51127 0.56466 1.31064 1.44627 1.50018 1.57065 1.78785 1.93819 2.40966 2.44817 2.88266 2.98905 3.03859 3.09242 3.65638 3.71961 3.75772 4.08506 4.15351 4.26731 4.29308 4.47181 4.57067 4.59246 4.64971 4.71596 4.77898 4.93237 5.04534 5.11284 5.15119 5.22649 5.44184 5.51731 5.67167 5.79359 6.04207 6.23218 6.36517 6.69252 6.86295 7.33468 7.43774 8.83234 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.005144 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.469340 B = 5442.048080 C = 7230.139027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.169 3.831 3 C -0.162 4.162 4 N -0.690 5.690 5 C 0.495 3.505 6 O -0.487 6.487 7 C 0.458 3.542 8 F -0.155 7.155 9 F -0.161 7.161 10 F -0.163 7.163 11 C 0.528 3.472 12 O -0.559 6.559 13 N -0.603 5.603 14 C 0.113 3.887 15 C -0.129 4.129 16 C 0.235 3.765 17 O -0.593 6.593 18 C -0.555 4.555 19 H 0.068 0.932 20 C 0.037 3.963 21 N -0.910 5.910 22 Si 0.954 3.046 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.270 1.270 26 C 0.109 3.891 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.417 0.583 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.380 0.620 39 H 0.270 0.730 40 H 0.081 0.919 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 -0.266 6.570 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.081 3.919 3 C -0.220 4.220 4 N -0.348 5.348 5 C 0.273 3.727 6 O -0.360 6.360 7 C 0.400 3.600 8 F -0.137 7.137 9 F -0.142 7.142 10 F -0.144 7.144 11 C 0.316 3.684 12 O -0.438 6.438 13 N -0.335 5.335 14 C -0.010 4.010 15 C -0.168 4.168 16 C 0.195 3.805 17 O -0.402 6.402 18 C -0.593 4.593 19 H 0.086 0.914 20 C -0.165 4.165 21 N -0.549 5.549 22 Si 0.781 3.219 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.194 1.194 26 C -0.013 4.013 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.258 0.742 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.979 0.543 6.264 13.529 hybrid contribution 2.079 -1.112 0.145 2.362 sum -9.900 -0.569 6.410 11.808 Atomic orbital electron populations 1.21995 0.89623 1.03786 1.04478 1.20753 0.97316 0.93712 0.80096 1.22246 1.01792 0.92565 1.05355 1.46312 1.54971 1.29237 1.04257 1.20261 0.82028 0.86055 0.84323 1.90798 1.37637 1.22444 1.85085 1.20014 0.76572 0.77958 0.85455 1.93262 1.90337 1.78502 1.51558 1.93283 1.85970 1.38274 1.96703 1.93340 1.28446 1.96066 1.96542 1.20262 0.80390 0.78535 0.89237 1.90688 1.55967 1.57987 1.39111 1.48712 1.10951 1.58211 1.15589 1.22006 0.93963 0.97004 0.87980 1.23028 0.92442 1.00626 1.00683 1.19778 0.89972 0.80691 0.90096 1.86071 1.42020 1.32460 1.79647 1.21708 0.95381 1.44015 0.98220 0.91423 1.25584 0.99910 0.94772 0.96193 1.69715 1.20770 1.47162 1.17257 0.85595 0.78274 0.78573 0.79495 1.20177 1.21391 1.19399 1.22665 0.87755 1.01920 0.88963 0.91463 0.89815 0.89566 0.88452 0.92178 0.89855 0.74215 0.90943 0.92840 0.91403 0.91362 0.76920 0.92083 0.90097 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 7.90 71.98 0.57 -2.72 16 2 C 0.17 4.46 0.64 2.86 0.00 4.46 16 3 C -0.16 -4.25 8.22 71.99 0.59 -3.66 16 4 N -0.69 -16.54 3.66 -426.33 -1.56 -18.10 16 5 C 0.49 11.87 6.78 87.66 0.59 12.47 16 6 O -0.49 -13.10 12.83 -3.03 -0.04 -13.14 16 7 C 0.46 10.23 3.43 71.24 0.24 10.48 16 8 F -0.16 -3.63 16.92 44.97 0.76 -2.87 16 9 F -0.16 -3.30 17.30 44.97 0.78 -2.52 16 10 F -0.16 -3.93 17.30 44.97 0.78 -3.15 16 11 C 0.53 17.00 6.68 87.66 0.59 17.59 16 12 O -0.56 -20.64 16.35 -3.00 -0.05 -20.69 16 13 N -0.60 -20.31 3.30 -811.80 -2.68 -22.99 16 14 C 0.11 3.99 6.88 86.73 0.60 4.58 16 15 C -0.13 -5.13 5.49 31.78 0.17 -4.96 16 16 C 0.23 9.99 0.89 -10.15 -0.01 9.98 16 17 O -0.59 -27.59 13.19 -148.98 -1.97 -29.56 16 18 C -0.56 -25.72 8.26 25.60 0.21 -25.50 16 19 H 0.07 3.05 7.79 -2.91 -0.02 3.03 16 20 C 0.04 1.74 5.26 84.66 0.45 2.18 16 21 N -0.91 -44.14 10.76 21.45 0.23 -43.91 16 22 Si 0.95 38.35 29.54 68.60 2.03 40.38 16 23 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 24 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 26 C 0.11 3.76 4.29 86.85 0.37 4.13 16 27 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.08 1.95 7.91 -2.39 -0.02 1.93 16 29 H 0.09 1.93 6.42 -2.39 -0.02 1.92 16 30 H 0.10 2.48 5.92 -2.39 -0.01 2.47 16 31 H 0.06 1.77 6.64 -2.39 -0.02 1.76 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.42 9.52 5.69 -92.71 -0.53 8.99 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.95 7.70 -2.39 -0.02 2.93 16 37 H 0.07 2.69 8.03 -2.39 -0.02 2.67 16 38 H 0.38 18.50 7.20 -74.06 -0.53 17.97 16 39 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 40 H 0.08 2.76 5.44 -2.39 -0.01 2.74 16 41 H 0.09 2.80 6.91 -2.39 -0.02 2.78 16 Total: -1.00 -52.51 343.72 2.71 -49.80 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.06 Total: 37.72 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 4.38 Total: 29.02 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -4.01 Total: -84.99 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -2.05 Total: -63.39 kcal Atomic # 9 Polarization: -10.86 SS G_CDS: 2.32 Total: -8.54 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -52.51 2.71 -49.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844020132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.990 kcal (2) G-P(sol) polarization free energy of solvation -52.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds