Wall clock time and date at job start Tue Mar 31 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 120.00272 * 2 1 4 4 C 1.53007 * 109.47107 * 125.00194 * 3 2 1 5 5 S 1.81405 * 109.46945 * 179.97438 * 4 3 2 6 6 C 1.81401 * 102.99811 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46930 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47069 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99990 * 179.97438 * 8 7 6 10 10 O 1.21359 * 120.00226 * 0.02562 * 9 8 7 11 11 C 1.49308 * 119.99928 * 179.97438 * 9 8 7 12 12 O 1.21403 * 119.99901 * 0.02562 * 11 9 8 13 13 N 1.34778 * 120.00276 * 180.02562 * 11 9 8 14 14 C 1.40286 * 120.00387 * 180.02562 * 13 11 9 15 15 C 1.40721 * 126.09820 * 359.95366 * 14 13 11 16 16 N 1.30877 * 108.37690 * 179.79326 * 15 14 13 17 17 N 1.40061 * 108.43327 * 0.38408 * 16 15 14 18 18 C 1.37293 * 126.05371 * 179.87288 * 17 16 15 19 19 H 1.07999 * 120.00325 * 173.76022 * 18 17 16 20 20 C 1.39009 * 120.00141 * 354.03938 * 18 17 16 21 21 N 1.31274 * 120.00094 * 5.58291 * 20 18 17 22 22 Si 1.86802 * 120.00082 * 185.57849 * 20 18 17 23 23 H 1.48497 * 109.47065 * 94.97773 * 22 20 18 24 24 H 1.48495 * 109.47224 * 214.98268 * 22 20 18 25 25 H 1.48506 * 109.47153 * 334.98084 * 22 20 18 26 26 C 1.35787 * 126.10217 * 180.02562 * 14 13 11 27 27 H 1.08003 * 119.99795 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00290 * 180.02562 * 1 2 3 29 29 H 1.08012 * 119.99670 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47487 * 4.99838 * 3 2 1 31 31 H 1.08998 * 109.47248 * 244.99714 * 3 2 1 32 32 H 1.09002 * 109.47194 * 60.00238 * 4 3 2 33 33 H 1.09002 * 109.47161 * 299.99871 * 4 3 2 34 34 H 1.08998 * 109.47098 * 60.00133 * 6 5 4 35 35 H 1.09001 * 109.47389 * 300.00374 * 6 5 4 36 36 H 1.08998 * 109.47220 * 60.00087 * 7 6 5 37 37 H 1.08992 * 109.47177 * 299.99704 * 7 6 5 38 38 H 0.96997 * 119.99535 * 0.02562 * 8 7 6 39 39 H 0.97001 * 119.99593 * 0.02562 * 13 11 9 40 40 H 1.08006 * 125.81655 * 0.02562 * 15 14 13 41 41 H 0.96999 * 120.00193 * 180.02562 * 21 20 18 42 42 H 1.07997 * 126.25020 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 16 3.9427 2.9036 1.1812 6 6 5.0241 2.7504 2.6295 7 6 5.8699 4.0175 2.7708 8 7 6.7437 3.8935 3.9401 9 6 7.5842 4.8965 4.2626 10 8 7.6169 5.9025 3.5847 11 6 8.4743 4.7704 5.4547 12 8 8.4413 3.7641 6.1332 13 7 9.3145 5.7735 5.7776 14 6 10.1513 5.6548 6.8973 15 6 10.2183 4.5522 7.7691 16 7 11.1148 4.8066 8.6880 17 7 11.6476 6.0792 8.4466 18 6 12.6140 6.7057 9.1940 19 1 13.0273 7.6469 8.8627 20 6 13.0648 6.1257 10.3741 21 7 12.6483 4.9294 10.7184 22 14 14.2633 7.0487 11.4701 23 1 13.5115 7.7710 12.5276 24 1 15.2011 6.0849 12.0999 25 1 15.0300 8.0241 10.6540 26 6 11.0400 6.5839 7.3341 27 1 -0.5400 0.9354 0.0004 28 1 -0.5401 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6213 1.4025 -0.9313 32 1 3.7400 0.5064 1.0920 33 1 2.4773 1.2355 2.1131 34 1 5.6790 1.8881 2.5044 35 1 4.4162 2.6180 3.5245 36 1 5.2147 4.8795 2.8961 37 1 6.4778 4.1502 1.8759 38 1 6.7178 3.0893 4.4818 39 1 9.3406 6.5776 5.2357 40 1 9.6325 3.6482 7.6909 41 1 12.9625 4.5248 11.5421 42 1 11.2311 7.5465 6.8831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850589102.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:18 Heat of formation + Delta-G solvation = 7.512712 kcal Electronic energy + Delta-G solvation = -24488.629010 eV Core-core repulsion = 20596.683438 eV Total energy + Delta-G solvation = -3891.945571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04238 -41.18430 -39.47543 -36.91419 -36.58406 -35.92341 -34.97690 -32.30889 -31.90397 -31.35420 -29.88815 -27.31678 -26.03959 -24.79004 -23.48826 -22.87297 -21.84386 -21.25507 -20.70819 -19.73271 -19.17640 -17.86708 -17.45601 -17.25365 -17.07994 -16.71280 -16.61794 -16.52808 -16.17910 -15.71040 -15.49146 -15.28188 -15.10679 -14.86507 -14.65173 -14.42413 -13.79440 -13.52325 -13.40705 -13.37935 -13.17018 -13.01007 -12.91458 -12.85955 -12.53108 -12.16788 -12.06552 -11.97490 -11.82978 -11.08084 -11.00147 -10.87343 -10.61938 -10.41418 -10.27254 -10.14328 -8.72394 -8.63048 -8.49551 -6.27057 0.25360 0.38262 1.29167 1.30448 1.40516 1.46241 1.58096 1.59916 1.71923 2.02471 2.12417 2.52264 2.60429 2.94847 3.06702 3.50416 3.56190 3.83220 3.87462 4.03002 4.14517 4.33163 4.39378 4.39470 4.52246 4.58040 4.62426 4.72727 4.82179 4.95120 4.98270 5.02543 5.03654 5.11077 5.20958 5.29948 5.74102 5.85497 5.88161 5.95933 6.23665 6.45935 6.66314 6.75816 7.05101 7.41028 7.62406 8.49938 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.043900 B = 0.001435 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.666757 B =19511.772504 C =20073.210880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C -0.076 4.076 4 C -0.071 4.071 5 S -0.276 6.276 6 C -0.094 4.094 7 C 0.138 3.862 8 N -0.685 5.685 9 C 0.527 3.473 10 O -0.539 6.539 11 C 0.488 3.512 12 O -0.542 6.542 13 N -0.581 5.581 14 C -0.059 4.059 15 C -0.046 4.046 16 N -0.310 5.310 17 N -0.163 5.163 18 C -0.355 4.355 19 H 0.141 0.859 20 C -0.003 4.003 21 N -0.820 5.820 22 Si 1.019 2.981 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.244 1.244 26 C -0.074 4.074 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.422 0.578 39 H 0.424 0.576 40 H 0.177 0.823 41 H 0.278 0.722 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.515 -5.805 -18.531 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.179 4.179 3 C -0.114 4.114 4 C -0.220 4.220 5 S -0.049 6.049 6 C -0.243 4.243 7 C 0.014 3.986 8 N -0.340 5.340 9 C 0.307 3.693 10 O -0.416 6.416 11 C 0.269 3.731 12 O -0.421 6.421 13 N -0.226 5.226 14 C -0.165 4.165 15 C -0.222 4.222 16 N -0.141 5.141 17 N 0.070 4.930 18 C -0.486 4.486 19 H 0.159 0.841 20 C -0.215 4.215 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.167 1.167 26 C -0.225 4.225 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.260 0.740 39 H 0.261 0.739 40 H 0.194 0.806 41 H 0.088 0.912 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.991 -5.554 -18.065 26.094 hybrid contribution 0.121 -0.596 0.673 0.907 sum -17.870 -6.150 -17.392 25.684 Atomic orbital electron populations 1.24075 0.96022 1.02678 0.99962 1.22914 0.96119 0.97975 1.00868 1.20443 0.97326 0.96462 0.97190 1.23393 1.00218 0.95388 1.02967 1.87109 1.50204 1.28886 1.38737 1.23436 1.00328 1.00895 0.99601 1.21103 0.92133 0.97650 0.87711 1.45608 1.38328 1.19908 1.30144 1.19637 0.81245 0.83928 0.84515 1.90755 1.68301 1.30061 1.52465 1.20191 0.82520 0.83871 0.86481 1.90648 1.68376 1.30275 1.52756 1.42074 1.35264 1.19556 1.25728 1.17305 1.04258 0.98630 0.96322 1.24251 1.01950 1.00526 0.95425 1.78151 1.14898 0.97347 1.23736 1.44830 1.23052 1.09425 1.15735 1.20669 1.16529 1.06965 1.04428 0.84121 1.26863 0.99625 0.96258 0.98774 1.70371 1.38199 1.14062 1.22149 0.84578 0.76509 0.77802 0.77345 1.19164 1.20034 1.16654 1.22017 1.02795 1.01927 0.95736 0.88328 0.87382 0.86295 0.90885 0.90124 0.88732 0.89223 0.87677 0.87787 0.90273 0.90236 0.74006 0.73870 0.80638 0.91219 0.79480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 14.32 67.79 0.97 -0.52 16 2 C -0.16 -1.28 9.52 25.65 0.24 -1.04 16 3 C -0.08 -0.69 5.66 29.85 0.17 -0.52 16 4 C -0.07 -0.66 5.92 71.98 0.43 -0.24 16 5 S -0.28 -3.81 21.74 -56.49 -1.23 -5.04 16 6 C -0.09 -1.10 6.05 71.98 0.44 -0.67 16 7 C 0.14 2.30 5.68 86.38 0.49 2.79 16 8 N -0.69 -14.12 5.55 -464.57 -2.58 -16.70 16 9 C 0.53 14.79 7.88 87.23 0.69 15.47 16 10 O -0.54 -16.76 16.47 -3.27 -0.05 -16.81 16 11 C 0.49 16.86 7.85 87.23 0.69 17.54 16 12 O -0.54 -21.23 13.62 -3.41 -0.05 -21.28 16 13 N -0.58 -21.12 5.45 -305.33 -1.66 -22.78 16 14 C -0.06 -2.69 6.90 37.83 0.26 -2.43 16 15 C -0.05 -2.42 10.84 85.44 0.93 -1.50 16 16 N -0.31 -18.25 10.41 -56.43 -0.59 -18.84 16 17 N -0.16 -8.89 3.73 -189.98 -0.71 -9.60 16 18 C -0.35 -18.52 10.24 84.02 0.86 -17.65 16 19 H 0.14 6.38 7.84 -2.91 -0.02 6.35 16 20 C 0.00 -0.15 5.50 84.96 0.47 0.32 16 21 N -0.82 -46.36 11.83 21.66 0.26 -46.10 16 22 Si 1.02 37.87 29.56 68.60 2.03 39.90 16 23 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.28 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.24 -8.19 7.11 99.48 0.71 -7.48 16 26 C -0.07 -3.40 11.50 83.41 0.96 -2.44 16 27 H 0.10 0.74 7.84 -2.91 -0.02 0.71 16 28 H 0.11 0.64 8.06 -2.91 -0.02 0.62 16 29 H 0.12 0.75 8.06 -2.90 -0.02 0.73 16 30 H 0.07 0.73 7.79 -2.39 -0.02 0.71 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.42 7.60 7.94 -92.71 -0.74 6.86 16 39 H 0.42 12.94 8.29 -92.71 -0.77 12.17 16 40 H 0.18 9.02 5.92 -2.91 -0.02 9.00 16 41 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -71.87 382.65 2.56 -69.31 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.44 Total: 38.82 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 7.58 Total: 9.13 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -5.28 Total: -114.02 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.10 Total: -38.09 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -1.23 Total: -5.04 kcal Total: -71.87 2.56 -69.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850589102.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.821 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds