Wall clock time and date at job start Tue Mar 31 2020 20:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32027 * 122.71336 * 2 1 4 4 C 1.29616 * 116.90822 * 180.24351 * 3 2 1 5 5 N 1.39003 * 124.94707 * 179.77392 * 4 3 2 6 6 C 1.34782 * 119.99810 * 359.69740 * 5 4 3 7 7 O 1.21576 * 119.99937 * 5.20272 * 6 5 4 8 8 N 1.34773 * 120.00191 * 185.20581 * 6 5 4 9 9 C 1.46969 * 120.59358 * 4.72062 * 8 6 5 10 10 C 1.53366 * 108.63804 * 235.24906 * 9 8 6 11 11 N 1.46963 * 108.63351 * 310.57655 * 10 9 8 12 12 C 1.34780 * 120.59547 * 235.20226 * 11 10 9 13 13 O 1.21690 * 119.99727 * 354.56070 * 12 11 10 14 14 C 1.46371 * 119.99948 * 174.56607 * 12 11 10 15 15 H 1.07994 * 120.00339 * 15.96936 * 14 12 11 16 16 C 1.40055 * 119.99636 * 195.96988 * 14 12 11 17 17 N 1.30675 * 119.99905 * 182.68207 * 16 14 12 18 18 Si 1.86799 * 120.00092 * 2.68011 * 16 14 12 19 19 H 1.48504 * 109.47054 * 275.13605 * 18 16 14 20 20 H 1.48498 * 109.47395 * 35.13323 * 18 16 14 21 21 H 1.48500 * 109.47286 * 155.13750 * 18 16 14 22 22 C 1.46968 * 118.81201 * 55.47972 * 11 10 9 23 23 C 1.46963 * 120.59490 * 184.74432 * 8 6 5 24 24 S 1.70967 * 110.11142 * 359.50987 * 4 3 2 25 25 C 1.33408 * 122.71953 * 179.70878 * 2 1 3 26 26 C 1.50706 * 125.96213 * 359.96607 * 25 2 1 27 27 H 1.08993 * 109.47237 * 270.28720 * 1 2 3 28 28 H 1.08997 * 109.47478 * 30.29239 * 1 2 3 29 29 H 1.09002 * 109.46411 * 150.29277 * 1 2 3 30 30 H 0.96998 * 120.00891 * 179.69861 * 5 4 3 31 31 H 1.09004 * 109.61008 * 115.50099 * 9 8 6 32 32 H 1.08998 * 109.61079 * 354.99639 * 9 8 6 33 33 H 1.08997 * 109.61338 * 190.83325 * 10 9 8 34 34 H 1.08997 * 109.60899 * 70.31988 * 10 9 8 35 35 H 0.97001 * 119.99622 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.61099 * 64.26664 * 22 11 10 37 37 H 1.08998 * 109.60784 * 184.77695 * 22 11 10 38 38 H 1.09003 * 109.61207 * 244.49179 * 23 8 6 39 39 H 1.08991 * 109.61150 * 4.83670 * 23 8 6 40 40 H 1.09008 * 109.47004 * 180.02562 * 26 25 2 41 41 H 1.08999 * 109.47306 * 300.01766 * 26 25 2 42 42 H 1.08994 * 109.47398 * 60.01997 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2205 1.1109 0.0000 4 6 3.5101 0.9798 -0.0049 5 7 4.4174 2.0328 -0.0102 6 6 3.9731 3.3052 -0.0167 7 8 2.7827 3.5339 0.0776 8 7 4.8482 4.3241 -0.1278 9 6 6.2777 4.0618 -0.3461 10 6 7.0791 4.7667 0.7553 11 7 6.6212 6.1598 0.8509 12 6 7.4965 7.1788 0.7407 13 8 8.6890 6.9504 0.6599 14 6 7.0127 8.5600 0.7185 15 1 6.0078 8.7856 1.0436 16 6 7.8530 9.5892 0.2756 17 7 7.4396 10.8285 0.3050 18 14 9.5647 9.1904 -0.3572 19 1 10.5073 9.1023 0.7870 20 1 9.5365 7.8915 -1.0763 21 1 10.0112 10.2604 -1.2851 22 6 5.1925 6.4220 1.0749 23 6 4.3902 5.7173 -0.0322 24 16 3.9326 -0.6769 0.0035 25 6 2.2281 -1.1224 0.0057 26 6 1.6802 -2.5263 0.0136 27 1 -0.3633 0.0052 1.0276 28 1 -0.3634 0.8873 -0.5183 29 1 -0.3632 -0.8927 -0.5093 30 1 5.3704 1.8520 -0.0093 31 1 6.5761 4.4490 -1.3204 32 1 6.4634 2.9886 -0.3037 33 1 8.1400 4.7467 0.5057 34 1 6.9152 4.2616 1.7072 35 1 8.0217 11.5413 -0.0015 36 1 4.8974 6.0321 2.0490 37 1 5.0071 7.4954 1.0363 38 1 4.5543 6.2224 -0.9841 39 1 3.3288 5.7373 0.2144 40 1 2.5056 -3.2384 0.0175 41 1 1.0697 -2.6731 0.9045 42 1 1.0693 -2.6829 -0.8754 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878013097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:12 Heat of formation + Delta-G solvation = 3.254917 kcal Electronic energy + Delta-G solvation = -26776.898372 eV Core-core repulsion = 22884.768169 eV Total energy + Delta-G solvation = -3892.130203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94014 -39.75592 -38.45531 -36.37221 -35.36659 -33.48902 -32.92860 -32.42408 -31.10232 -29.82751 -27.83645 -26.39509 -25.43315 -24.58457 -23.37128 -22.27279 -20.89051 -19.94803 -18.96920 -18.28530 -17.55864 -16.85694 -16.66900 -16.16666 -15.89226 -15.19370 -15.02166 -14.95301 -14.60639 -14.25688 -14.14421 -13.95952 -13.66834 -13.28641 -13.20762 -13.13646 -12.79611 -12.60363 -12.39013 -12.31532 -12.27741 -11.91385 -11.39225 -11.33934 -11.22871 -10.93904 -10.87854 -10.68358 -10.45557 -10.36051 -9.56172 -9.42640 -9.38928 -9.10563 -8.84410 -8.23059 -8.00443 -7.58615 -6.67929 -4.92198 0.57286 0.71327 1.41059 2.36357 2.60114 3.22702 3.36241 3.40807 3.45582 3.69632 4.03512 4.11744 4.29352 4.48405 4.70040 4.79307 4.92488 5.05262 5.16068 5.20120 5.26601 5.32163 5.39301 5.43583 5.45413 5.55935 5.58647 5.70672 5.72835 5.87003 5.90749 6.07287 6.09691 6.16562 6.33995 6.41302 6.66151 6.93810 7.45543 7.48895 7.77169 7.82353 8.20970 8.41735 8.61011 9.01280 9.90098 10.32398 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.002395 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.739413 B =11685.864275 C =12354.342135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.094 3.906 3 N -0.471 5.471 4 C 0.298 3.702 5 N -0.646 5.646 6 C 0.702 3.298 7 O -0.530 6.530 8 N -0.617 5.617 9 C 0.096 3.904 10 C 0.105 3.895 11 N -0.632 5.632 12 C 0.553 3.447 13 O -0.613 6.613 14 C -0.532 4.532 15 H 0.092 0.908 16 C 0.100 3.900 17 N -0.827 5.827 18 Si 0.965 3.035 19 H -0.280 1.280 20 H -0.258 1.258 21 H -0.322 1.322 22 C 0.106 3.894 23 C 0.115 3.885 24 S 0.108 5.892 25 C -0.254 4.254 26 C -0.064 4.064 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.417 0.583 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.283 0.717 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -24.431 -1.825 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 N -0.192 5.192 4 C -0.073 4.073 5 N -0.302 5.302 6 C 0.401 3.599 7 O -0.401 6.401 8 N -0.355 5.355 9 C -0.028 4.028 10 C -0.020 4.020 11 N -0.367 5.367 12 C 0.363 3.637 13 O -0.505 6.505 14 C -0.567 4.567 15 H 0.110 0.890 16 C -0.118 4.118 17 N -0.457 5.457 18 Si 0.798 3.202 19 H -0.206 1.206 20 H -0.183 1.183 21 H -0.254 1.254 22 C -0.018 4.018 23 C -0.008 4.008 24 S 0.359 5.641 25 C -0.376 4.376 26 C -0.124 4.124 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.257 0.743 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.111 -24.036 -1.803 25.768 hybrid contribution 0.466 -0.048 -0.179 0.502 sum -8.645 -24.084 -1.983 25.665 Atomic orbital electron populations 1.20355 0.87013 1.03293 1.02972 1.20037 0.98101 0.85494 1.00136 1.66448 1.02181 1.30473 1.20060 1.23142 0.90586 0.91411 1.02112 1.42417 1.08432 1.03138 1.76201 1.15819 0.85553 0.79722 0.78811 1.91032 1.13371 1.81957 1.53740 1.47345 1.07064 1.05832 1.75238 1.22182 0.80437 0.99146 1.01039 1.21583 0.99928 0.84057 0.96432 1.47668 1.07259 1.04311 1.77460 1.18384 0.84193 0.85593 0.75521 1.90239 1.16640 1.84098 1.59534 1.20762 1.02228 0.88275 1.45449 0.89031 1.25783 1.00908 0.93775 0.91381 1.69539 1.38432 1.00421 1.37281 0.85276 0.80157 0.76143 0.78645 1.20588 1.18296 1.25379 1.22050 0.81096 1.02626 0.96053 1.22178 1.00028 0.78148 1.00467 1.83833 1.08193 0.98818 1.73263 1.25335 0.93258 1.00916 1.18048 1.20113 1.00607 0.88828 1.02824 0.90545 0.90372 0.90751 0.74312 0.90185 0.90994 0.88204 0.92969 0.90707 0.92930 0.86799 0.90563 0.88335 0.91510 0.90603 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.06 36.01 0.36 -0.32 16 2 C 0.09 1.12 6.74 -84.20 -0.57 0.55 16 3 N -0.47 -7.14 8.65 -11.28 -0.10 -7.23 16 4 C 0.30 3.90 8.01 -87.35 -0.70 3.20 16 5 N -0.65 -8.04 5.30 -17.48 -0.09 -8.13 16 6 C 0.70 10.94 8.26 -86.92 -0.72 10.23 16 7 O -0.53 -10.22 14.41 5.30 0.08 -10.14 16 8 N -0.62 -9.02 2.95 -177.94 -0.52 -9.55 16 9 C 0.10 1.23 6.59 -3.60 -0.02 1.21 16 10 C 0.11 1.68 6.58 -3.60 -0.02 1.66 16 11 N -0.63 -12.65 2.94 -173.88 -0.51 -13.17 16 12 C 0.55 13.86 7.32 -12.99 -0.10 13.77 16 13 O -0.61 -16.74 11.52 5.20 0.06 -16.68 16 14 C -0.53 -14.26 9.35 -35.63 -0.33 -14.59 16 15 H 0.09 2.43 6.00 -52.49 -0.31 2.11 16 16 C 0.10 2.74 5.52 -17.36 -0.10 2.65 16 17 N -0.83 -22.84 13.92 55.55 0.77 -22.07 16 18 Si 0.97 24.59 26.03 -169.99 -4.42 20.16 16 19 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.26 -6.82 6.33 56.52 0.36 -6.47 16 21 H -0.32 -7.85 7.11 56.52 0.40 -7.45 16 22 C 0.11 1.85 6.54 -3.36 -0.02 1.83 16 23 C 0.12 1.80 6.60 -3.36 -0.02 1.77 16 24 S 0.11 1.01 23.22 -107.50 -2.50 -1.49 16 25 C -0.25 -2.42 6.58 -35.99 -0.24 -2.66 16 26 C -0.06 -0.38 9.54 36.01 0.34 -0.03 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.46 7.44 -51.93 -0.39 0.07 16 30 H 0.42 3.78 6.31 -40.82 -0.26 3.52 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.64 5.57 -51.93 -0.29 0.35 16 33 H 0.10 1.71 7.02 -51.93 -0.36 1.35 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.28 7.21 8.29 -40.82 -0.34 6.87 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.11 2.12 5.34 -51.93 -0.28 1.84 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.53 7.01 -51.93 -0.36 1.17 16 40 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.36 7.99 -51.93 -0.41 -0.05 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -35.42 353.27 -9.27 -44.70 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.23 Total: -0.99 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: -2.13 Total: 19.25 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.45 Total: -60.14 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: 0.14 Total: -26.82 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.42 Total: 20.16 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.42 -9.27 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878013097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.952 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds