Wall clock time and date at job start Tue Mar 31 2020 20:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 126.29418 * 2 1 4 4 C 1.47426 * 126.41263 * 359.95697 * 3 2 1 5 5 O 1.21606 * 120.00413 * 359.71651 * 4 3 2 6 6 N 1.34777 * 119.99972 * 179.71967 * 4 3 2 7 7 N 1.40105 * 119.99999 * 180.02562 * 6 4 3 8 8 C 1.34777 * 120.00003 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99750 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99761 * 180.02562 * 8 7 6 11 11 H 1.08999 * 110.76057 * 29.30198 * 10 8 7 12 12 C 1.55136 * 110.85611 * 152.79984 * 10 8 7 13 13 C 1.54038 * 106.80920 * 160.10223 * 12 10 8 14 14 C 1.54271 * 109.08917 * 313.05377 * 13 12 10 15 15 S 1.83098 * 104.64846 * 27.82314 * 14 13 12 16 16 C 1.41288 * 107.16979 * 179.69865 * 3 2 1 17 17 N 1.30445 * 108.02634 * 0.25945 * 16 3 2 18 18 N 1.34264 * 126.28858 * 180.14656 * 2 1 3 19 19 C 1.46490 * 125.75616 * 0.02865 * 18 2 1 20 20 C 1.50704 * 109.47584 * 270.29512 * 19 18 2 21 21 H 1.08000 * 119.99482 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00328 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00103 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00006 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46764 * 89.99923 * 24 22 20 26 26 H 1.48498 * 109.46942 * 209.99776 * 24 22 20 27 27 H 1.48495 * 109.47035 * 330.00165 * 24 22 20 28 28 H 1.08995 * 109.46680 * 90.02852 * 1 2 3 29 29 H 1.09000 * 109.46931 * 210.03039 * 1 2 3 30 30 H 1.08996 * 109.46689 * 330.02724 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 32 32 H 0.97004 * 119.99636 * 359.72328 * 7 6 4 33 33 H 1.09006 * 109.97133 * 279.65583 * 12 10 8 34 34 H 1.09003 * 109.97430 * 40.93053 * 12 10 8 35 35 H 1.09005 * 109.63652 * 193.01881 * 13 12 10 36 36 H 1.09007 * 109.42479 * 72.96340 * 13 12 10 37 37 H 1.09000 * 110.40436 * 269.03069 * 14 13 12 38 38 H 1.09005 * 110.40467 * 146.61711 * 14 13 12 39 39 H 1.08001 * 125.98556 * 180.23372 * 16 3 2 40 40 H 1.09004 * 109.47206 * 30.29786 * 19 18 2 41 41 H 1.09006 * 109.47146 * 150.29747 * 19 18 2 42 42 H 0.96994 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8859 2.5202 -0.0009 5 8 0.6997 2.7878 -0.0069 6 7 2.8000 3.5106 0.0049 7 7 2.3836 4.8483 0.0046 8 6 3.2977 5.8387 0.0110 9 8 4.4808 5.5719 0.0165 10 6 2.8496 7.2775 0.0112 11 1 1.8837 7.3813 0.5054 12 6 3.9132 8.1871 0.6809 13 6 3.6366 9.6242 0.2002 14 6 3.4309 9.6140 -1.3287 15 16 2.7839 7.9415 -1.6978 16 6 3.6591 0.6497 0.0071 17 7 3.6341 -0.6545 0.0054 18 7 2.3017 -1.0822 -0.0028 19 6 1.8501 -2.4758 -0.0069 20 6 1.6877 -2.9556 1.4124 21 1 1.8993 -2.2888 2.2353 22 6 1.2680 -4.2452 1.6605 23 7 1.1257 -4.6637 2.8992 24 14 0.9013 -5.3982 0.2372 25 1 2.1359 -6.1357 -0.1330 26 1 -0.1505 -6.3652 0.6419 27 1 0.4271 -4.6101 -0.9287 28 1 -0.3632 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3632 0.8902 0.5134 31 1 3.7463 3.2973 0.0101 32 1 1.4373 5.0617 -0.0038 33 1 3.8226 8.1293 1.7656 34 1 4.9128 7.8797 0.3734 35 1 4.4829 10.2636 0.4513 36 1 2.7381 10.0028 0.6877 37 1 4.3794 9.7761 -1.8408 38 1 2.7063 10.3746 -1.6197 39 1 4.5449 1.2675 0.0125 40 1 0.8942 -2.5464 -0.5260 41 1 2.5875 -3.0952 -0.5176 42 1 0.8308 -5.5711 3.0736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898010828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:15 Heat of formation + Delta-G solvation = 29.572881 kcal Electronic energy + Delta-G solvation = -25881.755845 eV Core-core repulsion = 21990.766874 eV Total energy + Delta-G solvation = -3890.988971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05030 -40.30474 -38.70634 -36.32137 -35.32160 -33.99753 -32.41942 -31.95553 -31.30526 -30.02067 -27.83679 -26.84070 -25.74255 -23.29109 -22.49268 -22.03837 -21.18579 -20.28902 -19.18652 -18.10234 -17.83925 -17.26219 -17.15338 -16.71342 -15.73994 -15.46779 -15.10677 -14.92703 -14.80512 -14.43554 -14.43191 -14.17143 -13.92168 -13.49060 -13.42072 -12.86301 -12.76591 -12.60300 -12.32829 -12.22594 -12.16668 -12.05172 -11.70102 -11.41796 -11.38181 -11.25560 -10.87889 -10.59995 -10.47553 -10.43153 -10.38290 -9.84558 -9.74120 -8.88268 -8.74432 -8.55696 -8.17854 -8.04799 -6.36174 -4.41594 0.85979 1.63980 1.74875 1.92608 2.49010 2.65461 3.06278 3.11092 3.14983 3.22588 3.68150 3.70847 3.87022 4.12661 4.18170 4.30317 4.44194 4.55488 4.57819 4.86438 4.98397 5.05050 5.07285 5.08953 5.24117 5.31860 5.33202 5.57771 5.60004 5.74571 5.95239 6.22229 6.32354 6.39124 6.51801 6.57094 6.60018 6.92193 7.13646 7.43282 7.49284 7.70506 8.15023 8.18207 8.39286 8.66739 9.17294 10.75862 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.001965 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.954716 B =14249.127329 C =14402.460726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.178 3.822 3 C -0.325 4.325 4 C 0.610 3.390 5 O -0.553 6.553 6 N -0.526 5.526 7 N -0.510 5.510 8 C 0.532 3.468 9 O -0.526 6.526 10 C -0.065 4.065 11 H 0.121 0.879 12 C -0.114 4.114 13 C -0.128 4.128 14 C -0.079 4.079 15 S -0.238 6.238 16 C 0.064 3.936 17 N -0.288 5.288 18 N -0.311 5.311 19 C 0.224 3.776 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.082 3.918 23 N -0.881 5.881 24 Si 0.874 3.126 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.431 0.569 32 H 0.432 0.568 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.181 0.819 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 27.088 -6.756 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.041 3.959 3 C -0.342 4.342 4 C 0.401 3.599 5 O -0.431 6.431 6 N -0.276 5.276 7 N -0.257 5.257 8 C 0.315 3.685 9 O -0.401 6.401 10 C -0.198 4.198 11 H 0.140 0.860 12 C -0.153 4.153 13 C -0.166 4.166 14 C -0.227 4.227 15 S -0.012 6.012 16 C -0.124 4.124 17 N -0.107 5.107 18 N -0.087 5.087 19 C 0.105 3.895 20 C -0.586 4.586 21 H 0.100 0.900 22 C -0.123 4.123 23 N -0.518 5.518 24 Si 0.700 3.300 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.117 0.883 31 H 0.273 0.727 32 H 0.274 0.726 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.197 0.803 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.167 25.153 -7.669 26.386 hybrid contribution -0.229 0.488 0.509 0.741 sum 1.938 25.641 -7.160 26.693 Atomic orbital electron populations 1.20680 0.86516 1.05345 1.03419 1.21417 0.95000 0.86132 0.93378 1.19249 0.93433 0.90977 1.30519 1.17387 0.84602 0.83149 0.74801 1.90720 1.16240 1.83841 1.52253 1.44758 1.10801 0.93584 1.78445 1.44677 1.10562 0.95436 1.75008 1.19828 0.85969 0.85346 0.77331 1.90740 1.16176 1.83421 1.49767 1.23981 1.04475 0.93796 0.97571 0.86046 1.22608 0.99269 0.91871 1.01588 1.22340 1.03889 0.97169 0.93244 1.24116 1.04566 0.95229 0.98811 1.87946 1.86183 1.15681 1.11409 1.23827 0.96347 0.92650 0.99543 1.77192 0.98030 1.12245 1.23223 1.48956 1.02750 1.07598 1.49408 1.20207 0.95866 0.73109 1.00321 1.21084 1.48230 0.99279 0.89969 0.89963 1.24795 0.94243 0.97406 0.95905 1.69861 1.44936 1.18179 1.18783 0.86888 0.79106 0.81508 0.82528 1.19507 1.20379 1.18823 0.90257 0.89552 0.88333 0.72673 0.72555 0.88949 0.88361 0.89171 0.90276 0.88484 0.88081 0.80260 0.92818 0.92967 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.34 36.01 0.34 -1.36 16 2 C 0.18 3.43 7.01 -81.60 -0.57 2.86 16 3 C -0.32 -5.66 6.13 -105.07 -0.64 -6.31 16 4 C 0.61 9.64 7.93 -12.52 -0.10 9.54 16 5 O -0.55 -9.59 14.68 5.27 0.08 -9.51 16 6 N -0.53 -6.95 6.25 30.43 0.19 -6.76 16 7 N -0.51 -5.80 6.26 31.22 0.20 -5.61 16 8 C 0.53 5.80 7.19 -10.99 -0.08 5.73 16 9 O -0.53 -7.22 15.76 5.55 0.09 -7.14 16 10 C -0.07 -0.50 3.61 -26.76 -0.10 -0.59 16 11 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.11 -0.70 5.77 -25.06 -0.14 -0.84 16 13 C -0.13 -0.51 6.38 -25.52 -0.16 -0.67 16 14 C -0.08 -0.40 7.34 37.82 0.28 -0.12 16 15 S -0.24 -2.05 22.71 -107.50 -2.44 -4.49 16 16 C 0.06 1.08 11.50 -16.98 -0.20 0.89 16 17 N -0.29 -5.95 12.50 30.86 0.39 -5.57 16 18 N -0.31 -6.66 3.56 -57.77 -0.21 -6.87 16 19 C 0.22 5.07 4.85 -5.20 -0.03 5.05 16 20 C -0.55 -14.69 9.94 -34.44 -0.34 -15.03 16 21 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16 24 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.50 7.71 -51.93 -0.40 1.10 16 30 H 0.10 1.62 6.51 -51.93 -0.34 1.28 16 31 H 0.43 5.28 6.95 -182.59 -1.27 4.01 16 32 H 0.43 4.39 8.00 -182.59 -1.46 2.93 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.78 7.33 -51.93 -0.38 0.39 16 35 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.18 2.23 7.50 -52.49 -0.39 1.84 16 40 H 0.05 1.13 6.70 -51.93 -0.35 0.78 16 41 H 0.05 1.17 7.57 -51.93 -0.39 0.78 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -33.31 368.00 -9.44 -42.75 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.53 Total: 6.29 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.84 Total: 1.24 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 1.34 Total: -49.49 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.16 Total: -16.65 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -2.44 Total: -4.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.31 -9.44 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898010828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.324 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds