Wall clock time and date at job start Tue Mar 31 2020 20:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 126.29418 * 2 1 4 4 C 1.47426 * 126.41263 * 359.95697 * 3 2 1 5 5 O 1.21606 * 120.00413 * 359.71651 * 4 3 2 6 6 N 1.34777 * 119.99972 * 179.71967 * 4 3 2 7 7 N 1.40105 * 119.99999 * 180.02562 * 6 4 3 8 8 C 1.34777 * 120.00003 * 179.97438 * 7 6 4 9 9 O 1.21284 * 119.99750 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99761 * 180.02562 * 8 7 6 11 11 H 1.08999 * 110.76057 * 29.30198 * 10 8 7 12 12 C 1.55136 * 110.85611 * 152.79984 * 10 8 7 13 13 C 1.54038 * 106.80920 * 160.10223 * 12 10 8 14 14 C 1.54271 * 109.08917 * 313.05377 * 13 12 10 15 15 S 1.83098 * 104.64846 * 27.82314 * 14 13 12 16 16 C 1.41288 * 107.16979 * 179.69865 * 3 2 1 17 17 N 1.30445 * 108.02634 * 0.25945 * 16 3 2 18 18 N 1.34264 * 126.28858 * 180.14656 * 2 1 3 19 19 C 1.46490 * 125.75616 * 0.02865 * 18 2 1 20 20 C 1.50704 * 109.47584 * 270.29512 * 19 18 2 21 21 H 1.08000 * 119.99482 * 0.02562 * 20 19 18 22 22 C 1.37870 * 120.00328 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00103 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00006 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46764 * 89.99923 * 24 22 20 26 26 H 1.48498 * 109.46942 * 209.99776 * 24 22 20 27 27 H 1.48495 * 109.47035 * 330.00165 * 24 22 20 28 28 H 1.08995 * 109.46680 * 90.02852 * 1 2 3 29 29 H 1.09000 * 109.46931 * 210.03039 * 1 2 3 30 30 H 1.08996 * 109.46689 * 330.02724 * 1 2 3 31 31 H 0.96999 * 120.00047 * 359.97438 * 6 4 3 32 32 H 0.97004 * 119.99636 * 359.72328 * 7 6 4 33 33 H 1.09006 * 109.97133 * 279.65583 * 12 10 8 34 34 H 1.09003 * 109.97430 * 40.93053 * 12 10 8 35 35 H 1.09005 * 109.63652 * 193.01881 * 13 12 10 36 36 H 1.09007 * 109.42479 * 72.96340 * 13 12 10 37 37 H 1.09000 * 110.40436 * 269.03069 * 14 13 12 38 38 H 1.09005 * 110.40467 * 146.61711 * 14 13 12 39 39 H 1.08001 * 125.98556 * 180.23372 * 16 3 2 40 40 H 1.09004 * 109.47206 * 30.29786 * 19 18 2 41 41 H 1.09006 * 109.47146 * 150.29747 * 19 18 2 42 42 H 0.96994 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8859 2.5202 -0.0009 5 8 0.6997 2.7878 -0.0069 6 7 2.8000 3.5106 0.0049 7 7 2.3836 4.8483 0.0046 8 6 3.2977 5.8387 0.0110 9 8 4.4808 5.5719 0.0165 10 6 2.8496 7.2775 0.0112 11 1 1.8837 7.3813 0.5054 12 6 3.9132 8.1871 0.6809 13 6 3.6366 9.6242 0.2002 14 6 3.4309 9.6140 -1.3287 15 16 2.7839 7.9415 -1.6978 16 6 3.6591 0.6497 0.0071 17 7 3.6341 -0.6545 0.0054 18 7 2.3017 -1.0822 -0.0028 19 6 1.8501 -2.4758 -0.0069 20 6 1.6877 -2.9556 1.4124 21 1 1.8993 -2.2888 2.2353 22 6 1.2680 -4.2452 1.6605 23 7 1.1257 -4.6637 2.8992 24 14 0.9013 -5.3982 0.2372 25 1 2.1359 -6.1357 -0.1330 26 1 -0.1505 -6.3652 0.6419 27 1 0.4271 -4.6101 -0.9287 28 1 -0.3632 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3632 0.8902 0.5134 31 1 3.7463 3.2973 0.0101 32 1 1.4373 5.0617 -0.0038 33 1 3.8226 8.1293 1.7656 34 1 4.9128 7.8797 0.3734 35 1 4.4829 10.2636 0.4513 36 1 2.7381 10.0028 0.6877 37 1 4.3794 9.7761 -1.8408 38 1 2.7063 10.3746 -1.6197 39 1 4.5449 1.2675 0.0125 40 1 0.8942 -2.5464 -0.5260 41 1 2.5875 -3.0952 -0.5176 42 1 0.8308 -5.5711 3.0736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898010828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:14 Heat of formation + Delta-G solvation = 5.743152 kcal Electronic energy + Delta-G solvation = -25882.789179 eV Core-core repulsion = 21990.766874 eV Total energy + Delta-G solvation = -3892.022305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.46616 -41.33103 -39.88327 -36.90443 -36.32002 -35.79758 -34.10670 -33.15240 -32.67025 -30.79413 -29.48241 -28.20579 -26.34792 -25.00754 -23.78880 -22.86065 -22.02603 -21.40405 -20.56241 -19.28552 -19.17600 -18.88548 -17.97834 -17.74161 -16.78487 -16.71146 -16.27879 -16.21525 -15.87850 -15.66893 -15.37785 -15.23925 -15.01865 -14.88372 -14.50300 -14.15349 -13.98091 -13.82800 -13.69468 -13.31516 -13.19216 -13.04675 -12.69126 -12.59566 -12.53020 -12.38619 -12.13930 -11.87658 -11.82014 -11.76990 -11.53096 -11.08720 -11.01568 -10.92419 -10.31710 -9.80397 -9.35328 -8.82063 -8.42987 -6.55350 0.19259 0.52003 0.67418 1.18863 1.26695 1.34292 1.36895 1.45412 1.64153 1.70990 2.24624 2.36699 2.82285 2.89776 3.30532 3.46686 3.65844 3.71352 3.80365 3.96633 4.02590 4.07095 4.12098 4.23231 4.43284 4.49141 4.64692 4.66747 4.70176 4.75540 4.93542 4.99579 5.04121 5.08761 5.16991 5.19539 5.46815 5.48972 5.66922 5.79939 6.17795 6.38826 6.47939 6.70575 6.73163 7.08572 7.24405 8.73234 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.001965 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.954716 B =14249.127329 C =14402.460726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.162 3.838 3 C -0.325 4.325 4 C 0.614 3.386 5 O -0.568 6.568 6 N -0.519 5.519 7 N -0.508 5.508 8 C 0.533 3.467 9 O -0.556 6.556 10 C -0.054 4.054 11 H 0.148 0.852 12 C -0.114 4.114 13 C -0.121 4.121 14 C -0.065 4.065 15 S -0.301 6.301 16 C 0.080 3.920 17 N -0.329 5.329 18 N -0.335 5.335 19 C 0.232 3.768 20 C -0.553 4.553 21 H 0.027 0.973 22 C 0.023 3.977 23 N -0.934 5.934 24 Si 0.949 3.051 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.233 1.233 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.436 0.564 32 H 0.438 0.562 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.222 0.778 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 29.196 -8.265 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.026 3.974 3 C -0.342 4.342 4 C 0.404 3.596 5 O -0.448 6.448 6 N -0.267 5.267 7 N -0.256 5.256 8 C 0.318 3.682 9 O -0.433 6.433 10 C -0.186 4.186 11 H 0.166 0.834 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.213 4.213 15 S -0.076 6.076 16 C -0.107 4.107 17 N -0.148 5.148 18 N -0.111 5.111 19 C 0.112 3.888 20 C -0.592 4.592 21 H 0.046 0.954 22 C -0.177 4.177 23 N -0.572 5.572 24 Si 0.770 3.230 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.156 1.156 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.279 0.721 32 H 0.282 0.718 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.238 0.762 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.881 27.320 -9.190 28.885 hybrid contribution -0.043 0.047 1.056 1.058 sum 1.838 27.366 -8.134 28.608 Atomic orbital electron populations 1.20701 0.85151 1.04739 1.04768 1.21950 0.96137 0.86221 0.93140 1.19473 0.93474 0.91632 1.29602 1.17069 0.84567 0.82990 0.74967 1.90711 1.16892 1.84011 1.53142 1.44533 1.10623 0.94432 1.77118 1.44878 1.11171 0.94389 1.75131 1.20496 0.85425 0.86361 0.75964 1.90726 1.17487 1.84073 1.50994 1.24065 1.06232 0.91325 0.97007 0.83402 1.22658 0.97537 0.92812 1.02351 1.22347 1.05475 0.95846 0.92227 1.24256 1.04863 0.92469 0.99725 1.88162 1.86689 1.19408 1.13326 1.24489 0.97609 0.91806 0.96816 1.77135 0.98147 1.14145 1.25347 1.48809 1.03394 1.07434 1.51496 1.19968 0.96988 0.74311 0.97501 1.21177 1.48160 0.98874 0.90939 0.95449 1.25814 0.93642 0.99227 0.99039 1.70022 1.46501 1.18992 1.21685 0.85703 0.79067 0.78903 0.79314 1.19005 1.20039 1.15562 0.87857 0.90734 0.88188 0.72079 0.71814 0.87469 0.90520 0.87401 0.88546 0.88210 0.86340 0.76218 0.90594 0.92542 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.15 9.34 71.24 0.67 -2.49 16 2 C 0.16 6.19 7.01 42.14 0.30 6.49 16 3 C -0.33 -11.10 6.13 -20.15 -0.12 -11.22 16 4 C 0.61 18.75 7.93 86.66 0.69 19.43 16 5 O -0.57 -19.08 14.68 -4.05 -0.06 -19.14 16 6 N -0.52 -13.03 6.25 -175.88 -1.10 -14.13 16 7 N -0.51 -10.88 6.26 -173.53 -1.09 -11.97 16 8 C 0.53 10.98 7.19 87.66 0.63 11.61 16 9 O -0.56 -14.86 15.76 -3.04 -0.05 -14.91 16 10 C -0.05 -0.72 3.61 30.58 0.11 -0.61 16 11 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 12 C -0.11 -1.14 5.77 31.68 0.18 -0.96 16 13 C -0.12 -0.57 6.38 31.38 0.20 -0.37 16 14 C -0.07 -0.50 7.34 72.41 0.53 0.03 16 15 S -0.30 -4.83 22.71 -56.49 -1.28 -6.11 16 16 C 0.08 2.64 11.50 85.65 0.99 3.62 16 17 N -0.33 -13.61 12.50 -56.28 -0.70 -14.31 16 18 N -0.33 -14.43 3.56 -336.69 -1.20 -15.63 16 19 C 0.23 10.49 4.85 85.64 0.42 10.91 16 20 C -0.55 -30.68 9.94 25.60 0.25 -30.43 16 21 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 22 C 0.02 1.27 5.47 84.65 0.46 1.73 16 23 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 24 Si 0.95 39.76 27.47 68.60 1.88 41.65 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 28 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.07 2.61 7.71 -2.39 -0.02 2.59 16 30 H 0.10 3.25 6.51 -2.39 -0.02 3.24 16 31 H 0.44 10.07 6.95 -213.32 -1.48 8.58 16 32 H 0.44 8.28 8.00 -213.31 -1.71 6.57 16 33 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.08 1.13 7.33 -2.39 -0.02 1.11 16 35 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 36 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.22 5.01 7.50 -2.91 -0.02 4.99 16 40 H 0.08 3.07 6.70 -2.39 -0.02 3.06 16 41 H 0.06 2.49 7.57 -2.38 -0.02 2.47 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -75.82 368.00 -0.16 -75.98 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -2.16 Total: 26.33 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.30 Total: 7.74 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.79 Total: -111.53 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.11 Total: -34.05 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.88 Total: 41.65 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.28 Total: -6.11 kcal Total: -75.82 -0.16 -75.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898010828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.724 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds