Wall clock time and date at job start Tue Mar 31 2020 20:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33508 * 125.69187 * 2 1 4 4 C 1.32550 * 109.16440 * 180.02562 * 3 2 1 5 5 C 1.40938 * 132.33101 * 180.02562 * 4 3 2 6 6 C 1.36020 * 119.32562 * 179.97438 * 5 4 3 7 7 C 1.40467 * 119.69718 * 0.02562 * 6 5 4 8 8 C 1.34947 * 120.29856 * 359.97438 * 7 6 5 9 9 N 1.36474 * 120.61397 * 0.02562 * 8 7 6 10 10 C 1.35113 * 125.68308 * 179.97438 * 2 1 3 11 11 C 1.50693 * 126.41140 * 0.02562 * 10 2 1 12 12 N 1.46501 * 109.47359 * 269.97310 * 11 10 2 13 13 S 1.65602 * 120.00083 * 164.34899 * 12 11 10 14 14 O 1.42097 * 106.39964 * 176.15552 * 13 12 11 15 15 O 1.42099 * 106.40476 * 309.08268 * 13 12 11 16 16 N 1.65603 * 107.21265 * 62.61624 * 13 12 11 17 17 C 1.46498 * 120.00407 * 272.90219 * 16 13 12 18 18 C 1.46508 * 119.99956 * 92.90886 * 16 13 12 19 19 C 1.50704 * 109.46993 * 95.50396 * 18 16 13 20 20 H 1.07995 * 120.00522 * 4.68608 * 19 18 16 21 21 C 1.37880 * 119.99663 * 184.69127 * 19 18 16 22 22 N 1.31513 * 119.99643 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47120 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47356 * 119.99848 * 23 21 19 26 26 H 1.48504 * 109.46695 * 239.99560 * 23 21 19 27 27 H 1.08991 * 109.46889 * 89.97643 * 1 2 3 28 28 H 1.08996 * 109.47325 * 209.97763 * 1 2 3 29 29 H 1.09003 * 109.46824 * 329.97128 * 1 2 3 30 30 H 1.07996 * 120.33540 * 0.02562 * 5 4 3 31 31 H 1.08009 * 120.14694 * 180.27466 * 6 5 4 32 32 H 1.08004 * 119.84619 * 180.02562 * 7 6 5 33 33 H 1.08004 * 119.69361 * 179.97438 * 8 7 6 34 34 H 1.09007 * 109.47467 * 29.97688 * 11 10 2 35 35 H 1.08995 * 109.47186 * 149.97169 * 11 10 2 36 36 H 0.96998 * 119.99837 * 344.35977 * 12 11 10 37 37 H 1.08996 * 109.47033 * 90.00505 * 17 16 13 38 38 H 1.09000 * 109.47123 * 210.00836 * 17 16 13 39 39 H 1.08999 * 109.46888 * 330.00400 * 17 16 13 40 40 H 1.08998 * 109.46976 * 215.50530 * 18 16 13 41 41 H 1.09000 * 109.46401 * 335.50737 * 18 16 13 42 42 H 0.97010 * 119.99889 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2860 1.0843 0.0000 4 6 3.5567 0.7072 -0.0006 5 6 4.7630 1.4361 -0.0003 6 6 5.9465 0.7656 -0.0006 7 6 5.9505 -0.6390 -0.0015 8 6 4.7873 -1.3232 -0.0017 9 7 3.5928 -0.6632 -0.0015 10 6 2.2952 -1.0975 0.0005 11 6 1.8319 -2.5314 0.0006 12 7 1.6818 -2.9961 1.3818 13 16 0.8285 -4.3787 1.7022 14 8 0.9422 -4.6053 3.1004 15 8 -0.4191 -4.2439 1.0355 16 7 1.6228 -5.6279 0.9599 17 6 1.3283 -5.9560 -0.4372 18 6 2.6200 -6.4050 1.7003 19 6 1.9729 -7.6425 2.2668 20 1 0.9441 -7.8705 2.0303 21 6 2.6944 -8.4837 3.0872 22 7 3.9473 -8.2062 3.3748 23 14 1.8926 -10.0180 3.7889 24 1 0.4871 -10.1019 3.3170 25 1 2.6399 -11.2185 3.3356 26 1 1.9133 -9.9529 5.2723 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 4.7478 2.5160 0.0008 31 1 6.8788 1.3109 0.0041 32 1 6.8888 -1.1739 -0.0013 33 1 4.8018 -2.4031 -0.0029 34 1 0.8732 -2.6036 -0.5132 35 1 2.5669 -3.1508 -0.5133 36 1 2.0822 -2.4938 2.1087 37 1 1.9898 -5.3878 -1.0911 38 1 1.4841 -7.0224 -0.6006 39 1 0.2918 -5.7021 -0.6593 40 1 3.4284 -6.6929 1.0282 41 1 3.0213 -5.8001 2.5134 42 1 4.4551 -8.7982 3.9517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908367454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:51 Heat of formation + Delta-G solvation = -11.060232 kcal Electronic energy + Delta-G solvation = -27411.587177 eV Core-core repulsion = 23518.836222 eV Total energy + Delta-G solvation = -3892.750955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.89613 -38.60601 -38.29892 -37.24365 -36.86956 -36.56890 -34.52000 -34.47880 -32.61972 -30.38442 -29.66283 -28.77198 -26.83199 -26.52651 -24.22182 -23.87536 -23.18505 -21.48786 -20.47763 -19.05967 -18.73096 -18.45700 -18.02610 -17.78257 -17.47054 -16.97044 -16.65289 -16.38437 -15.95436 -15.80304 -15.17079 -14.96080 -14.66922 -14.44668 -14.17669 -14.09106 -13.96952 -13.86840 -13.47659 -13.34980 -13.19580 -13.14024 -13.02325 -12.94845 -12.93939 -12.52562 -12.47255 -12.40590 -12.38159 -11.99719 -11.94732 -11.73069 -11.21869 -10.65032 -10.57170 -9.81512 -9.65636 -8.83530 -8.21539 -6.32857 -0.42303 -0.16776 0.25436 1.38006 1.41135 1.52054 1.54653 1.66255 2.10661 2.40021 2.55724 2.63155 3.10192 3.15760 3.37852 3.48147 3.64034 3.83922 3.99134 4.04838 4.13904 4.19945 4.28763 4.46871 4.57272 4.66973 4.72824 4.78182 4.85274 4.92715 4.93809 5.08845 5.09995 5.16348 5.19801 5.26653 5.43282 5.57216 5.62219 5.69650 5.79673 6.00334 6.07788 6.10681 6.75967 6.80441 7.36340 8.86113 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.003333 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.891391 B = 8400.069887 C = 9529.573587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.070 3.930 3 N -0.531 5.531 4 C 0.213 3.787 5 C -0.106 4.106 6 C -0.078 4.078 7 C -0.133 4.133 8 C 0.035 3.965 9 N -0.356 5.356 10 C -0.097 4.097 11 C 0.205 3.795 12 N -1.119 6.119 13 S 2.799 3.201 14 O -1.011 7.011 15 O -1.003 7.003 16 N -1.001 6.001 17 C 0.083 3.917 18 C 0.271 3.729 19 C -0.551 4.551 20 H 0.053 0.947 21 C 0.013 3.987 22 N -0.923 5.923 23 Si 0.954 3.046 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.281 1.281 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.165 0.835 31 H 0.181 0.819 32 H 0.185 0.815 33 H 0.175 0.825 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.417 0.583 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.018 0.982 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 17.041 -11.724 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 N -0.253 5.253 4 C -0.030 4.030 5 C -0.127 4.127 6 C -0.101 4.101 7 C -0.153 4.153 8 C -0.087 4.087 9 N -0.027 5.027 10 C -0.211 4.211 11 C 0.079 3.921 12 N -0.881 5.881 13 S 2.807 3.193 14 O -0.995 6.995 15 O -0.986 6.986 16 N -0.843 5.843 17 C -0.062 4.062 18 C 0.148 3.852 19 C -0.591 4.591 20 H 0.071 0.929 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.779 3.221 24 H -0.194 1.194 25 H -0.194 1.194 26 H -0.207 1.207 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.182 0.818 31 H 0.198 0.802 32 H 0.202 0.798 33 H 0.193 0.807 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.882 17.509 -11.306 21.201 hybrid contribution 0.467 -1.457 0.849 1.750 sum 4.350 16.052 -10.457 19.645 Atomic orbital electron populations 1.20312 0.85605 1.03674 1.04058 1.21155 0.97734 0.87404 1.00124 1.70644 0.99192 1.29938 1.25495 1.21504 0.95183 0.80903 1.05439 1.20620 0.87424 1.01484 1.03130 1.21565 0.98894 0.94039 0.95628 1.21372 0.97895 0.95166 1.00913 1.22231 0.82933 1.00310 1.03226 1.42775 1.06014 1.08819 1.45106 1.20759 0.81820 0.97058 1.21414 1.19571 1.02870 0.87653 0.82055 1.56054 1.74197 1.43178 1.14655 1.01217 0.73387 0.72630 0.72023 1.93580 1.87118 1.85250 1.33511 1.93510 1.41480 1.86813 1.76764 1.57471 1.57073 1.46977 1.22775 1.21673 1.01486 1.03249 0.79786 1.18636 0.86570 0.89697 0.90321 1.21897 0.98663 1.08587 1.29916 0.92870 1.25725 0.95472 1.01269 0.96227 1.70003 1.09441 1.39155 1.37635 0.85564 0.78916 0.79439 0.78146 1.19357 1.19393 1.20732 0.88913 0.90437 0.90327 0.81774 0.80156 0.79782 0.80749 0.87239 0.89392 0.74901 0.90492 0.90970 0.90451 0.95014 0.96403 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.03 71.24 0.71 -1.01 16 2 C 0.07 1.88 7.06 41.59 0.29 2.18 16 3 N -0.53 -15.36 11.32 -182.39 -2.06 -17.43 16 4 C 0.21 5.31 7.81 134.11 1.05 6.35 16 5 C -0.11 -1.80 10.11 22.42 0.23 -1.58 16 6 C -0.08 -0.85 10.07 22.30 0.22 -0.63 16 7 C -0.13 -1.58 9.98 22.06 0.22 -1.36 16 8 C 0.04 0.62 10.85 83.21 0.90 1.52 16 9 N -0.36 -8.33 2.94 -338.88 -1.00 -9.32 16 10 C -0.10 -2.43 6.43 41.06 0.26 -2.17 16 11 C 0.20 4.79 6.28 85.63 0.54 5.32 16 12 N -1.12 -32.11 6.04 -190.79 -1.15 -33.27 16 13 S 2.80 106.96 6.08 -56.49 -0.34 106.62 16 14 O -1.01 -48.92 17.00 -128.00 -2.18 -51.09 16 15 O -1.00 -39.18 16.34 -128.00 -2.09 -41.27 16 16 N -1.00 -39.00 3.23 -543.21 -1.75 -40.75 16 17 C 0.08 2.51 10.69 127.77 1.37 3.87 16 18 C 0.27 13.26 5.10 85.63 0.44 13.69 16 19 C -0.55 -30.67 9.38 25.60 0.24 -30.43 16 20 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 21 C 0.01 0.71 5.46 84.66 0.46 1.17 16 22 N -0.92 -53.25 13.29 21.45 0.28 -52.97 16 23 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.71 7.75 -2.39 -0.02 1.69 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 32 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.11 2.37 7.42 -2.38 -0.02 2.35 16 35 H 0.09 1.72 8.07 -2.39 -0.02 1.70 16 36 H 0.42 11.67 8.65 -96.75 -0.84 10.83 16 37 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 38 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 39 H 0.08 2.18 7.04 -2.39 -0.02 2.16 16 40 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16 41 H 0.02 0.96 7.51 -2.39 -0.02 0.94 16 42 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -78.75 371.68 -1.12 -79.87 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.21 Total: 16.47 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 6.94 Total: -3.05 kcal Atomic # 7 Polarization: -148.05 SS G_CDS: -5.68 Total: -153.74 kcal Atomic # 8 Polarization: -88.10 SS G_CDS: -4.27 Total: -92.37 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 106.96 SS G_CDS: -0.34 Total: 106.62 kcal Total: -78.75 -1.12 -79.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908367454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.808 kcal (2) G-P(sol) polarization free energy of solvation -78.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds