Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00364 * 2 1 4 4 O 1.21581 * 119.99780 * 180.02562 * 3 2 1 5 5 N 1.34778 * 119.99560 * 359.97438 * 3 2 1 6 6 C 1.46504 * 119.99400 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.47039 * 35.00069 * 6 5 3 8 8 C 1.50707 * 109.46696 * 154.99922 * 6 5 3 9 9 H 1.08000 * 119.99729 * 116.08463 * 8 6 5 10 10 C 1.37873 * 119.99943 * 295.80874 * 8 6 5 11 11 N 1.31518 * 120.00058 * 173.84365 * 10 8 6 12 12 Si 1.86796 * 120.00258 * 353.83530 * 10 8 6 13 13 H 1.48505 * 109.47073 * 87.35694 * 12 10 8 14 14 H 1.48494 * 109.47498 * 207.35980 * 12 10 8 15 15 H 1.48503 * 109.47086 * 327.35976 * 12 10 8 16 16 C 1.52996 * 109.47228 * 274.99659 * 6 5 3 17 17 F 1.39900 * 109.47124 * 305.13209 * 16 6 5 18 18 F 1.39902 * 109.47103 * 65.12587 * 16 6 5 19 19 F 1.39899 * 109.47294 * 185.12819 * 16 6 5 20 20 C 1.46504 * 119.99809 * 179.97438 * 2 1 3 21 21 H 1.09004 * 110.32814 * 180.70235 * 20 2 1 22 22 C 1.54489 * 110.36546 * 58.46374 * 20 2 1 23 23 C 1.54788 * 102.05129 * 225.87082 * 22 20 2 24 24 C 1.52994 * 110.36267 * 268.01279 * 23 22 20 25 25 C 1.52995 * 110.57304 * 145.57359 * 23 22 20 26 26 O 1.45839 * 104.48708 * 26.73739 * 23 22 20 27 27 C 1.34059 * 109.90867 * 329.45843 * 26 23 22 28 28 O 1.20825 * 125.09324 * 200.83158 * 27 26 23 29 29 H 1.08996 * 109.47335 * 90.00118 * 1 2 3 30 30 H 1.09001 * 109.47792 * 210.00342 * 1 2 3 31 31 H 1.09003 * 109.47374 * 330.00324 * 1 2 3 32 32 H 0.96990 * 120.00089 * 359.97438 * 5 3 2 33 33 H 0.96991 * 120.00265 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.87106 * 343.97744 * 22 20 2 35 35 H 1.09003 * 110.87023 * 107.65492 * 22 20 2 36 36 H 1.09001 * 109.47112 * 176.49014 * 24 23 22 37 37 H 1.09006 * 109.47175 * 296.48555 * 24 23 22 38 38 H 1.08998 * 109.47653 * 56.48606 * 24 23 22 39 39 H 1.09002 * 109.47661 * 303.38485 * 25 23 22 40 40 H 1.08999 * 109.47319 * 63.38781 * 25 23 22 41 41 H 1.09002 * 109.46735 * 183.38594 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1671 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1976 3.6031 -0.0011 7 1 3.1083 3.4965 -0.5905 8 6 1.3336 4.6817 -0.6021 9 1 1.0181 5.5198 0.0017 10 6 0.9507 4.6016 -1.9242 11 7 0.0999 5.4753 -2.4165 12 14 1.6405 3.2521 -3.0162 13 1 0.7939 2.0379 -2.8972 14 1 1.6489 3.7133 -4.4276 15 1 3.0272 2.9322 -2.5917 16 6 2.5615 3.9826 1.4357 17 9 1.4030 4.0050 2.2197 18 9 3.4571 3.0411 1.9541 19 9 3.1570 5.2484 1.4472 20 6 2.1974 -1.2688 0.0006 21 1 3.2719 -1.0857 0.0130 22 6 1.8102 -2.1137 -1.2335 23 6 1.5873 -3.5129 -0.6101 24 6 2.8806 -4.3288 -0.6574 25 6 0.4631 -4.2528 -1.3378 26 8 1.2072 -3.2406 0.7712 27 6 1.7926 -2.1102 1.1915 28 8 1.9705 -1.8083 2.3478 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3635 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 0.4951 2.3344 -0.0013 33 1 -0.1691 5.4192 -3.3467 34 1 0.8921 -1.7402 -1.6873 35 1 2.6227 -2.1354 -1.9598 36 1 2.7247 -5.2860 -0.1598 37 1 3.1639 -4.5011 -1.6958 38 1 3.6748 -3.7809 -0.1503 39 1 -0.4455 -3.6513 -1.3099 40 1 0.7530 -4.4252 -2.3743 41 1 0.2809 -5.2091 -0.8476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932899827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = -255.282991 kcal Electronic energy + Delta-G solvation = -31930.313389 eV Core-core repulsion = 27010.069778 eV Total energy + Delta-G solvation = -4920.243611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.05266 -46.55256 -46.54986 -41.62839 -39.57762 -37.89325 -35.77305 -34.87448 -33.90825 -32.59610 -30.82619 -28.68207 -27.89000 -26.86460 -25.02238 -24.70850 -22.25941 -21.46912 -20.61000 -19.47004 -18.69423 -17.67687 -17.53955 -17.01934 -16.89105 -16.60927 -16.44650 -16.29784 -15.54872 -15.27610 -14.59077 -14.24565 -14.14312 -14.08861 -13.71112 -13.44713 -13.42344 -13.19147 -13.05349 -13.00327 -12.85606 -12.77538 -12.73917 -12.71151 -12.65748 -12.43511 -12.30565 -12.14990 -11.80491 -11.76984 -11.26448 -11.23905 -10.81889 -10.70427 -10.51966 -10.22136 -9.96477 -9.75534 -9.04224 -8.74828 -8.37927 -6.56444 -4.69415 1.77474 2.64190 3.01731 3.09188 3.14766 3.26153 3.39111 3.75026 3.87251 4.03118 4.07656 4.19201 4.25693 4.30562 4.60785 4.89954 4.95394 5.00111 5.05642 5.11933 5.22002 5.22466 5.26913 5.32901 5.37368 5.39419 5.48812 5.56686 5.65964 5.67065 5.75416 6.24426 6.41723 6.58900 6.82743 7.01990 7.15151 7.35173 7.84418 8.38339 8.48168 8.93581 8.98347 10.51721 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.004542 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.402031 B = 6162.824501 C = 7286.747438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.620 5.620 3 C 0.698 3.302 4 O -0.581 6.581 5 N -0.725 5.725 6 C 0.217 3.783 7 H 0.093 0.907 8 C -0.535 4.535 9 H 0.096 0.904 10 C 0.097 3.903 11 N -0.860 5.860 12 Si 0.878 3.122 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.256 1.256 16 C 0.441 3.559 17 F -0.190 7.190 18 F -0.191 7.191 19 F -0.184 7.184 20 C 0.102 3.898 21 H 0.143 0.857 22 C -0.160 4.160 23 C 0.104 3.896 24 C -0.166 4.166 25 C -0.141 4.141 26 O -0.339 6.339 27 C 0.473 3.527 28 O -0.437 6.437 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.398 0.602 33 H 0.275 0.725 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 -17.816 -1.782 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.360 5.360 3 C 0.400 3.600 4 O -0.458 6.458 5 N -0.383 5.383 6 C 0.114 3.886 7 H 0.110 0.890 8 C -0.573 4.573 9 H 0.114 0.886 10 C -0.112 4.112 11 N -0.493 5.493 12 Si 0.705 3.295 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.181 1.181 16 C 0.385 3.615 17 F -0.172 7.172 18 F -0.173 7.173 19 F -0.166 7.166 20 C -0.006 4.006 21 H 0.160 0.840 22 C -0.199 4.199 23 C 0.067 3.933 24 C -0.223 4.223 25 C -0.198 4.198 26 O -0.257 6.257 27 C 0.309 3.691 28 O -0.317 6.317 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.333 -17.678 -1.223 17.723 hybrid contribution -0.229 -0.509 -0.401 0.687 sum 0.104 -18.187 -1.624 18.260 Atomic orbital electron populations 1.21794 0.79397 1.03503 1.02189 1.46822 1.06230 1.03424 1.79552 1.16320 0.85718 0.80534 0.77431 1.90882 1.11304 1.85920 1.57721 1.47024 1.10553 1.03784 1.76896 1.20193 0.97690 0.83602 0.87158 0.88983 1.20837 1.33170 1.06102 0.97190 0.88565 1.24913 0.93153 0.95727 0.97436 1.69879 1.28876 1.34985 1.15590 0.86769 0.81415 0.81741 0.79615 1.19731 1.21196 1.18054 1.21502 0.73916 0.74189 0.91912 1.93081 1.50020 1.96274 1.77819 1.93163 1.69413 1.65451 1.89244 1.93105 1.84339 1.42081 1.97055 1.22075 1.01611 0.84325 0.92553 0.83999 1.23538 1.05212 0.93123 0.97988 1.23117 0.96556 0.95650 0.77977 1.22271 0.95394 1.00861 1.03808 1.21861 0.97099 1.00883 1.00002 1.87089 1.64528 1.42910 1.31126 1.23434 0.74067 0.81111 0.90452 1.90737 1.48080 1.72503 1.20382 0.91955 0.91330 0.90164 0.76345 0.91514 0.88256 0.87654 0.90839 0.89825 0.91608 0.91138 0.89894 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 9.14 59.84 0.55 1.51 16 2 N -0.62 -10.07 2.83 -179.74 -0.51 -10.58 16 3 C 0.70 14.20 7.72 -86.91 -0.67 13.53 16 4 O -0.58 -13.42 14.27 5.29 0.08 -13.34 16 5 N -0.73 -15.08 3.15 -59.81 -0.19 -15.26 16 6 C 0.22 5.03 1.41 -69.08 -0.10 4.93 16 7 H 0.09 2.26 6.18 -51.93 -0.32 1.94 16 8 C -0.54 -13.55 8.63 -34.44 -0.30 -13.85 16 9 H 0.10 2.66 7.93 -52.49 -0.42 2.24 16 10 C 0.10 2.47 5.46 -17.82 -0.10 2.38 16 11 N -0.86 -23.10 13.96 55.43 0.77 -22.33 16 12 Si 0.88 19.68 26.27 -169.99 -4.47 15.22 16 13 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.26 -5.98 6.46 56.52 0.37 -5.62 16 16 C 0.44 10.00 2.79 37.16 0.10 10.11 16 17 F -0.19 -4.23 16.97 2.25 0.04 -4.19 16 18 F -0.19 -4.41 15.83 2.25 0.04 -4.37 16 19 F -0.18 -4.17 16.84 2.25 0.04 -4.13 16 20 C 0.10 1.42 3.37 -67.99 -0.23 1.19 16 21 H 0.14 2.15 6.96 -51.93 -0.36 1.79 16 22 C -0.16 -1.52 5.82 -25.01 -0.15 -1.67 16 23 C 0.10 0.88 1.24 -89.68 -0.11 0.76 16 24 C -0.17 -1.13 8.77 37.15 0.33 -0.81 16 25 C -0.14 -0.85 8.92 37.15 0.33 -0.51 16 26 O -0.34 -4.16 10.48 -38.46 -0.40 -4.56 16 27 C 0.47 7.05 6.90 36.31 0.25 7.30 16 28 O -0.44 -8.25 18.00 -18.41 -0.33 -8.58 16 29 H 0.06 0.70 7.86 -51.93 -0.41 0.30 16 30 H 0.07 0.78 7.19 -51.93 -0.37 0.41 16 31 H 0.08 1.05 6.36 -51.93 -0.33 0.72 16 32 H 0.40 7.60 6.32 -40.82 -0.26 7.35 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.10 0.90 6.79 -51.93 -0.35 0.55 16 35 H 0.10 0.84 7.92 -51.93 -0.41 0.43 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -31.98 350.07 -4.69 -36.67 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.94 Total: 5.33 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: -0.09 Total: 24.86 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.08 Total: -48.17 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.66 Total: -26.48 kcal Atomic # 9 Polarization: -12.81 SS G_CDS: 0.11 Total: -12.70 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.47 Total: 15.22 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.98 -4.69 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932899827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.617 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds