Wall clock time and date at job start Tue Mar 31 2020 20:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34780 * 120.00364 * 2 1 4 4 O 1.21581 * 119.99780 * 180.02562 * 3 2 1 5 5 N 1.34778 * 119.99560 * 359.97438 * 3 2 1 6 6 C 1.46504 * 119.99400 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.47039 * 35.00069 * 6 5 3 8 8 C 1.50707 * 109.46696 * 154.99922 * 6 5 3 9 9 H 1.08000 * 119.99729 * 116.08463 * 8 6 5 10 10 C 1.37873 * 119.99943 * 295.80874 * 8 6 5 11 11 N 1.31518 * 120.00058 * 173.84365 * 10 8 6 12 12 Si 1.86796 * 120.00258 * 353.83530 * 10 8 6 13 13 H 1.48505 * 109.47073 * 87.35694 * 12 10 8 14 14 H 1.48494 * 109.47498 * 207.35980 * 12 10 8 15 15 H 1.48503 * 109.47086 * 327.35976 * 12 10 8 16 16 C 1.52996 * 109.47228 * 274.99659 * 6 5 3 17 17 F 1.39900 * 109.47124 * 305.13209 * 16 6 5 18 18 F 1.39902 * 109.47103 * 65.12587 * 16 6 5 19 19 F 1.39899 * 109.47294 * 185.12819 * 16 6 5 20 20 C 1.46504 * 119.99809 * 179.97438 * 2 1 3 21 21 H 1.09004 * 110.32814 * 180.70235 * 20 2 1 22 22 C 1.54489 * 110.36546 * 58.46374 * 20 2 1 23 23 C 1.54788 * 102.05129 * 225.87082 * 22 20 2 24 24 C 1.52994 * 110.36267 * 268.01279 * 23 22 20 25 25 C 1.52995 * 110.57304 * 145.57359 * 23 22 20 26 26 O 1.45839 * 104.48708 * 26.73739 * 23 22 20 27 27 C 1.34059 * 109.90867 * 329.45843 * 26 23 22 28 28 O 1.20825 * 125.09324 * 200.83158 * 27 26 23 29 29 H 1.08996 * 109.47335 * 90.00118 * 1 2 3 30 30 H 1.09001 * 109.47792 * 210.00342 * 1 2 3 31 31 H 1.09003 * 109.47374 * 330.00324 * 1 2 3 32 32 H 0.96990 * 120.00089 * 359.97438 * 5 3 2 33 33 H 0.96991 * 120.00265 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.87106 * 343.97744 * 22 20 2 35 35 H 1.09003 * 110.87023 * 107.65492 * 22 20 2 36 36 H 1.09001 * 109.47112 * 176.49014 * 24 23 22 37 37 H 1.09006 * 109.47175 * 296.48555 * 24 23 22 38 38 H 1.08998 * 109.47653 * 56.48606 * 24 23 22 39 39 H 1.09002 * 109.47661 * 303.38485 * 25 23 22 40 40 H 1.08999 * 109.47319 * 63.38781 * 25 23 22 41 41 H 1.09002 * 109.46735 * 183.38594 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1671 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1976 3.6031 -0.0011 7 1 3.1083 3.4965 -0.5905 8 6 1.3336 4.6817 -0.6021 9 1 1.0181 5.5198 0.0017 10 6 0.9507 4.6016 -1.9242 11 7 0.0999 5.4753 -2.4165 12 14 1.6405 3.2521 -3.0162 13 1 0.7939 2.0379 -2.8972 14 1 1.6489 3.7133 -4.4276 15 1 3.0272 2.9322 -2.5917 16 6 2.5615 3.9826 1.4357 17 9 1.4030 4.0050 2.2197 18 9 3.4571 3.0411 1.9541 19 9 3.1570 5.2484 1.4472 20 6 2.1974 -1.2688 0.0006 21 1 3.2719 -1.0857 0.0130 22 6 1.8102 -2.1137 -1.2335 23 6 1.5873 -3.5129 -0.6101 24 6 2.8806 -4.3288 -0.6574 25 6 0.4631 -4.2528 -1.3378 26 8 1.2072 -3.2406 0.7712 27 6 1.7926 -2.1102 1.1915 28 8 1.9705 -1.8083 2.3478 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3635 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 0.4951 2.3344 -0.0013 33 1 -0.1691 5.4192 -3.3467 34 1 0.8921 -1.7402 -1.6873 35 1 2.6227 -2.1354 -1.9598 36 1 2.7247 -5.2860 -0.1598 37 1 3.1639 -4.5011 -1.6958 38 1 3.6748 -3.7809 -0.1503 39 1 -0.4455 -3.6513 -1.3099 40 1 0.7530 -4.4252 -2.3743 41 1 0.2809 -5.2091 -0.8476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932899827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:53 Heat of formation + Delta-G solvation = -275.596994 kcal Electronic energy + Delta-G solvation = -31931.194270 eV Core-core repulsion = 27010.069778 eV Total energy + Delta-G solvation = -4921.124492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.91294 -48.41962 -48.40082 -42.67717 -41.06853 -39.05104 -37.20618 -36.55770 -34.77768 -34.40072 -32.04973 -30.24166 -28.39660 -27.97143 -26.96166 -25.68867 -23.67173 -22.79338 -21.85077 -20.82962 -20.26984 -19.38462 -19.31293 -18.64055 -18.37983 -18.12275 -17.82081 -17.43075 -16.73899 -16.66628 -16.23230 -15.52244 -15.33265 -15.27959 -15.09357 -14.96134 -14.86635 -14.80907 -14.73316 -14.60000 -14.54695 -14.52736 -14.21361 -13.70408 -13.53816 -13.45173 -13.37906 -13.07735 -12.98925 -12.74708 -12.59478 -12.55377 -12.05899 -11.97738 -11.87874 -11.73913 -11.60189 -11.42302 -10.97788 -10.35838 -9.76925 -8.53033 -6.71786 0.58402 1.24089 1.34609 1.42413 1.48589 1.79276 2.00896 2.14693 2.22031 2.57901 2.74977 3.01504 3.17015 3.20140 3.34906 3.49619 3.55892 3.65922 3.94552 3.98928 4.04136 4.41049 4.45208 4.57122 4.64616 4.69947 4.76498 4.78810 4.87278 4.90853 4.92157 5.16981 5.19752 5.29391 5.32885 5.62772 5.67882 5.90852 6.20269 6.42158 6.80890 6.99069 7.35946 8.59143 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.004542 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.402031 B = 6162.824501 C = 7286.747438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.617 5.617 3 C 0.695 3.305 4 O -0.613 6.613 5 N -0.724 5.724 6 C 0.229 3.771 7 H 0.080 0.920 8 C -0.542 4.542 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.898 5.898 12 Si 0.931 3.069 13 H -0.243 1.243 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.441 3.559 17 F -0.187 7.187 18 F -0.192 7.192 19 F -0.185 7.185 20 C 0.095 3.905 21 H 0.126 0.874 22 C -0.149 4.149 23 C 0.100 3.900 24 C -0.168 4.168 25 C -0.139 4.139 26 O -0.343 6.343 27 C 0.480 3.520 28 O -0.488 6.488 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.281 0.719 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -20.588 -3.700 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.356 5.356 3 C 0.397 3.603 4 O -0.493 6.493 5 N -0.382 5.382 6 C 0.124 3.876 7 H 0.098 0.902 8 C -0.580 4.580 9 H 0.082 0.918 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.755 3.245 13 H -0.167 1.167 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.385 3.615 17 F -0.169 7.169 18 F -0.174 7.174 19 F -0.167 7.167 20 C -0.011 4.011 21 H 0.144 0.856 22 C -0.187 4.187 23 C 0.064 3.936 24 C -0.225 4.225 25 C -0.196 4.196 26 O -0.259 6.259 27 C 0.319 3.681 28 O -0.373 6.373 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.128 0.872 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.438 -20.511 -3.161 20.758 hybrid contribution -0.007 0.297 0.244 0.384 sum -0.444 -20.214 -2.917 20.428 Atomic orbital electron populations 1.22060 0.77232 1.04177 1.04072 1.46832 1.07620 1.02846 1.78280 1.16342 0.85370 0.81275 0.77323 1.90860 1.12782 1.86573 1.59065 1.46545 1.10878 1.03410 1.77392 1.19808 0.96856 0.84013 0.86967 0.90206 1.20716 1.33677 1.06167 0.97397 0.91756 1.25469 0.93006 0.97483 0.98239 1.69950 1.30232 1.36738 1.16339 0.85952 0.80192 0.80451 0.77931 1.16671 1.20784 1.19703 1.21474 0.73955 0.74119 0.91916 1.93082 1.49835 1.96259 1.77709 1.93161 1.69480 1.65505 1.89241 1.93100 1.84363 1.42154 1.97062 1.22281 1.00653 0.83737 0.94470 0.85604 1.23610 1.06522 0.92361 0.96200 1.23559 0.98493 0.95562 0.75960 1.22344 0.94014 1.00493 1.05605 1.21933 0.95998 1.00582 1.01052 1.87097 1.63718 1.41531 1.33590 1.23542 0.73002 0.81662 0.89872 1.90706 1.50383 1.73807 1.22367 0.89346 0.89720 0.90576 0.75263 0.90941 0.86965 0.85544 0.90352 0.86941 0.93092 0.91075 0.87221 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 9.14 127.77 1.17 2.70 16 2 N -0.62 -18.93 2.83 -840.85 -2.38 -21.32 16 3 C 0.69 27.59 7.72 179.05 1.38 28.97 16 4 O -0.61 -28.16 14.27 -3.97 -0.06 -28.22 16 5 N -0.72 -29.52 3.15 -461.40 -1.46 -30.98 16 6 C 0.23 10.63 1.41 44.25 0.06 10.69 16 7 H 0.08 3.95 6.18 -2.39 -0.01 3.93 16 8 C -0.54 -27.78 8.63 25.60 0.22 -27.56 16 9 H 0.06 3.67 7.93 -2.91 -0.02 3.64 16 10 C 0.06 3.26 5.46 84.65 0.46 3.73 16 11 N -0.90 -48.30 13.96 21.45 0.30 -48.00 16 12 Si 0.93 39.53 26.27 68.60 1.80 41.33 16 13 H -0.24 -9.11 7.11 99.48 0.71 -8.40 16 14 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.27 -12.25 6.46 99.48 0.64 -11.61 16 16 C 0.44 20.22 2.79 71.98 0.20 20.42 16 17 F -0.19 -8.36 16.97 44.97 0.76 -7.60 16 18 F -0.19 -8.93 15.83 44.97 0.71 -8.22 16 19 F -0.19 -8.51 16.84 44.97 0.76 -7.75 16 20 C 0.10 2.51 3.37 44.95 0.15 2.66 16 21 H 0.13 3.76 6.96 -2.38 -0.02 3.74 16 22 C -0.15 -2.29 5.82 31.71 0.18 -2.11 16 23 C 0.10 1.35 1.24 -10.19 -0.01 1.34 16 24 C -0.17 -1.76 8.77 71.98 0.63 -1.13 16 25 C -0.14 -1.05 8.92 71.98 0.64 -0.41 16 26 O -0.34 -7.74 10.48 -50.11 -0.53 -8.26 16 27 C 0.48 13.94 6.90 71.43 0.49 14.43 16 28 O -0.49 -18.71 18.00 21.64 0.39 -18.32 16 29 H 0.09 1.63 7.86 -2.39 -0.02 1.61 16 30 H 0.08 1.70 7.19 -2.39 -0.02 1.68 16 31 H 0.08 1.84 6.36 -2.39 -0.02 1.82 16 32 H 0.41 15.08 6.32 -92.72 -0.59 14.50 16 33 H 0.28 13.93 8.31 -92.72 -0.77 13.16 16 34 H 0.11 1.49 6.79 -2.39 -0.02 1.48 16 35 H 0.13 1.48 7.92 -2.39 -0.02 1.46 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 39 H 0.07 0.57 8.13 -2.39 -0.02 0.55 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -70.64 350.07 6.33 -64.31 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.44 Total: 19.29 kcal Atomic # 6 Polarization: 48.15 SS G_CDS: 5.59 Total: 53.74 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -3.54 Total: -100.29 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.19 Total: -54.81 kcal Atomic # 9 Polarization: -25.80 SS G_CDS: 2.23 Total: -23.57 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.80 Total: 41.33 kcal Total: -70.64 6.33 -64.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932899827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.287 kcal (2) G-P(sol) polarization free energy of solvation -70.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -281.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds