Wall clock time and date at job start Tue Mar 31 2020 20:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00173 * 2 1 4 4 O 1.20818 * 119.99983 * 0.27497 * 3 2 1 5 5 C 1.50706 * 119.99763 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.29158 * 300.69992 * 5 3 2 7 7 C 1.54615 * 110.32205 * 178.56345 * 5 3 2 8 8 C 1.55115 * 102.75776 * 219.32036 * 7 5 3 9 9 N 1.48108 * 103.31729 * 37.26871 * 8 7 5 10 10 C 1.34771 * 127.03884 * 140.72878 * 9 8 7 11 11 O 1.21585 * 120.00296 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99668 * 0.04145 * 10 9 8 13 13 C 1.46504 * 119.99693 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47173 * 35.00271 * 13 12 10 15 15 C 1.50705 * 109.46651 * 154.99964 * 13 12 10 16 16 H 1.07991 * 120.00321 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99583 * 179.97438 * 15 13 12 18 18 N 1.31522 * 120.00259 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99951 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46909 * 60.00368 * 19 17 15 21 21 H 1.48497 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46933 * 300.00315 * 19 17 15 23 23 C 1.52998 * 109.47008 * 274.99672 * 13 12 10 24 24 F 1.39902 * 109.47011 * 60.00571 * 23 13 12 25 25 F 1.39906 * 109.47015 * 180.02562 * 23 13 12 26 26 F 1.39900 * 109.47582 * 300.00259 * 23 13 12 27 27 C 1.47490 * 105.93005 * 320.76449 * 9 8 7 28 28 H 1.09003 * 109.46718 * 299.99877 * 1 2 3 29 29 H 1.08998 * 109.47176 * 60.00127 * 1 2 3 30 30 H 1.08996 * 109.47464 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46809 * 59.29863 * 6 5 3 32 32 H 1.09003 * 109.46870 * 179.30198 * 6 5 3 33 33 H 1.09003 * 109.47077 * 299.30034 * 6 5 3 34 34 H 1.08998 * 110.74416 * 337.59527 * 7 5 3 35 35 H 1.09005 * 110.73782 * 100.92373 * 7 5 3 36 36 H 1.09004 * 110.58219 * 278.82539 * 8 7 5 37 37 H 1.08998 * 110.82041 * 155.82121 * 8 7 5 38 38 H 0.96994 * 120.00130 * 0.02562 * 12 10 9 39 39 H 0.96998 * 119.99789 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.91270 * 266.08779 * 27 9 8 41 41 H 1.08998 * 109.91467 * 144.80373 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5664 1.2747 0.0006 6 6 4.1341 0.5711 1.2349 7 6 4.0269 2.7503 -0.0359 8 6 5.2478 2.7045 -0.9916 9 7 4.8437 1.7122 -2.0141 10 6 5.0750 1.7730 -3.3404 11 8 4.6827 0.8809 -4.0675 12 7 5.7415 2.8225 -3.8607 13 6 5.9924 2.8889 -5.3026 14 1 5.1475 2.4568 -5.8387 15 6 6.1671 4.3275 -5.7163 16 1 6.0986 5.1135 -4.9790 17 6 6.4156 4.6399 -7.0360 18 7 6.4995 3.6826 -7.9339 19 14 6.6329 6.4230 -7.5487 20 1 7.7839 7.0114 -6.8180 21 1 6.8871 6.4903 -9.0102 22 1 5.3997 7.1848 -7.2256 23 6 7.2631 2.1045 -5.6358 24 9 7.1008 0.7690 -5.2517 25 9 7.5030 2.1684 -7.0126 26 9 8.3475 2.6592 -4.9477 27 6 4.1356 0.6441 -1.2839 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.8221 -0.4733 1.2333 32 1 5.2226 0.6253 1.2155 33 1 3.7619 1.0601 2.1352 34 1 3.2429 3.3894 -0.4420 35 1 4.3246 3.0864 0.9574 36 1 6.1382 2.3685 -0.4600 37 1 5.4191 3.6793 -1.4482 38 1 6.0550 3.5338 -3.2806 39 1 6.6747 3.9024 -8.8623 40 1 4.8313 -0.1551 -1.0283 41 1 3.3236 0.2513 -1.8959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:27 Heat of formation + Delta-G solvation = -240.553736 kcal Electronic energy + Delta-G solvation = -31256.150298 eV Core-core repulsion = 26336.545396 eV Total energy + Delta-G solvation = -4919.604902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.30581 -45.95798 -45.57491 -41.15602 -39.60544 -37.74429 -36.53396 -34.62845 -33.24035 -32.35406 -29.76370 -28.53873 -27.94533 -26.41385 -24.57627 -24.13120 -22.72986 -21.40396 -19.83668 -19.57699 -18.32228 -17.45423 -17.00312 -16.83201 -16.72686 -16.58810 -16.49923 -15.79985 -15.56832 -15.04554 -14.76288 -14.22921 -14.19061 -13.69524 -13.31690 -13.15570 -13.06841 -12.87829 -12.87692 -12.51946 -12.48180 -12.35862 -12.30017 -12.24513 -12.12576 -11.93066 -11.81035 -11.73054 -11.30888 -11.15160 -11.00388 -10.97033 -10.85725 -10.79247 -10.52832 -10.38392 -9.66807 -9.57039 -8.71618 -8.58628 -8.13205 -6.22147 -4.46271 1.97810 2.42691 2.92539 3.20979 3.25812 3.27826 3.70266 4.04110 4.18002 4.25275 4.47793 4.54119 4.65904 4.70914 4.88620 4.93822 4.95129 4.97687 5.15323 5.28435 5.30986 5.41958 5.50953 5.59816 5.63688 5.74459 5.78947 5.86760 5.91383 5.97942 6.17496 6.20576 6.34549 6.87848 7.21096 7.38917 7.51975 7.62507 7.66801 8.49311 8.58672 9.12767 9.24256 10.69403 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.003278 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.423439 B = 8540.116891 C = 8966.794037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.476 3.524 4 O -0.501 6.501 5 C -0.069 4.069 6 C -0.135 4.135 7 C -0.119 4.119 8 C 0.101 3.899 9 N -0.645 5.645 10 C 0.722 3.278 11 O -0.578 6.578 12 N -0.722 5.722 13 C 0.262 3.738 14 H 0.085 0.915 15 C -0.552 4.552 16 H 0.076 0.924 17 C 0.066 3.934 18 N -0.839 5.839 19 Si 0.916 3.084 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.416 3.584 24 F -0.216 7.216 25 F -0.137 7.137 26 F -0.210 7.210 27 C 0.143 3.857 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.394 0.606 39 H 0.269 0.731 40 H 0.080 0.920 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 -4.279 17.961 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.318 3.682 4 O -0.388 6.388 5 C -0.071 4.071 6 C -0.193 4.193 7 C -0.157 4.157 8 C -0.022 4.022 9 N -0.385 5.385 10 C 0.424 3.576 11 O -0.455 6.455 12 N -0.375 5.375 13 C 0.156 3.844 14 H 0.103 0.897 15 C -0.589 4.589 16 H 0.094 0.906 17 C -0.143 4.143 18 N -0.472 5.472 19 Si 0.742 3.258 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.360 3.640 24 F -0.198 7.198 25 F -0.118 7.118 26 F -0.192 7.192 27 C 0.018 3.982 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.677 -4.715 17.012 18.543 hybrid contribution 0.317 1.111 -0.052 1.157 sum -5.359 -3.604 16.960 18.148 Atomic orbital electron populations 1.23293 0.76206 1.03803 1.02602 1.86504 1.23481 1.33169 1.83913 1.23427 0.91469 0.81417 0.71860 1.90659 1.66826 1.36366 1.44905 1.21490 0.87340 0.99490 0.98778 1.21878 1.02011 1.00905 0.94483 1.22900 0.98726 0.93089 1.01004 1.22514 0.96664 0.93729 0.89328 1.47816 1.61240 1.24704 1.04783 1.15490 0.79306 0.83138 0.79654 1.90930 1.57377 1.39491 1.57694 1.45269 1.59524 1.22717 1.09999 1.19626 0.90896 0.97361 0.76493 0.89711 1.20825 1.54315 0.89315 0.94483 0.90559 1.25073 0.94134 0.98893 0.96239 1.70399 1.42887 1.31274 1.02688 0.86266 0.78895 0.82988 0.77650 1.19821 1.20864 1.19797 1.23165 0.88108 0.76625 0.76146 1.93074 1.95776 1.39373 1.91608 1.93403 1.94940 1.95318 1.28164 1.92981 1.59837 1.85782 1.80606 1.21705 0.97004 0.89799 0.89676 0.91956 0.91722 0.87965 0.90804 0.90358 0.91648 0.88707 0.89082 0.90723 0.89646 0.77183 0.92052 0.90208 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.89 10.46 -39.26 -0.41 -4.30 16 3 C 0.48 5.83 6.37 36.01 0.23 6.06 16 4 O -0.50 -7.38 15.18 -18.74 -0.28 -7.66 16 5 C -0.07 -0.71 0.90 -154.29 -0.14 -0.85 16 6 C -0.14 -0.96 8.15 37.16 0.30 -0.66 16 7 C -0.12 -1.19 5.98 -24.76 -0.15 -1.34 16 8 C 0.10 1.13 6.95 -2.04 -0.01 1.12 16 9 N -0.65 -10.14 3.29 -175.37 -0.58 -10.72 16 10 C 0.72 15.11 8.07 -86.92 -0.70 14.41 16 11 O -0.58 -14.41 15.25 5.29 0.08 -14.33 16 12 N -0.72 -15.27 4.96 -59.81 -0.30 -15.56 16 13 C 0.26 6.64 2.21 -69.08 -0.15 6.49 16 14 H 0.09 2.41 7.58 -51.93 -0.39 2.02 16 15 C -0.55 -14.18 8.47 -34.44 -0.29 -14.47 16 16 H 0.08 1.84 7.74 -52.49 -0.41 1.43 16 17 C 0.07 1.71 5.20 -17.82 -0.09 1.62 16 18 N -0.84 -23.14 9.50 55.43 0.53 -22.62 16 19 Si 0.92 20.15 29.54 -169.99 -5.02 15.12 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 C 0.42 10.83 2.81 37.16 0.10 10.94 16 24 F -0.22 -5.63 15.67 2.25 0.04 -5.60 16 25 F -0.14 -3.83 12.91 2.25 0.03 -3.81 16 26 F -0.21 -5.23 16.94 2.25 0.04 -5.19 16 27 C 0.14 1.88 6.27 -2.98 -0.02 1.86 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 1.16 6.90 -51.93 -0.36 0.80 16 35 H 0.09 0.66 7.85 -51.93 -0.41 0.26 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.93 6.82 -51.93 -0.35 0.58 16 38 H 0.39 7.19 6.87 -40.82 -0.28 6.91 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 41 H 0.08 1.23 7.57 -51.93 -0.39 0.84 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -33.36 351.24 -5.53 -38.89 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.08 Total: 3.95 kcal Atomic # 6 Polarization: 26.38 SS G_CDS: 0.14 Total: 26.52 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.35 Total: -48.90 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.61 Total: -26.29 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.36 -5.53 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.666 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds