Wall clock time and date at job start Tue Mar 31 2020 20:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00173 * 2 1 4 4 O 1.20818 * 119.99983 * 0.27497 * 3 2 1 5 5 C 1.50706 * 119.99763 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.29158 * 300.69992 * 5 3 2 7 7 C 1.54615 * 110.32205 * 178.56345 * 5 3 2 8 8 C 1.55115 * 102.75776 * 219.32036 * 7 5 3 9 9 N 1.48108 * 103.31729 * 37.26871 * 8 7 5 10 10 C 1.34771 * 127.03884 * 140.72878 * 9 8 7 11 11 O 1.21585 * 120.00296 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99668 * 0.04145 * 10 9 8 13 13 C 1.46504 * 119.99693 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47173 * 35.00271 * 13 12 10 15 15 C 1.50705 * 109.46651 * 154.99964 * 13 12 10 16 16 H 1.07991 * 120.00321 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99583 * 179.97438 * 15 13 12 18 18 N 1.31522 * 120.00259 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99951 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46909 * 60.00368 * 19 17 15 21 21 H 1.48497 * 109.47073 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46933 * 300.00315 * 19 17 15 23 23 C 1.52998 * 109.47008 * 274.99672 * 13 12 10 24 24 F 1.39902 * 109.47011 * 60.00571 * 23 13 12 25 25 F 1.39906 * 109.47015 * 180.02562 * 23 13 12 26 26 F 1.39900 * 109.47582 * 300.00259 * 23 13 12 27 27 C 1.47490 * 105.93005 * 320.76449 * 9 8 7 28 28 H 1.09003 * 109.46718 * 299.99877 * 1 2 3 29 29 H 1.08998 * 109.47176 * 60.00127 * 1 2 3 30 30 H 1.08996 * 109.47464 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46809 * 59.29863 * 6 5 3 32 32 H 1.09003 * 109.46870 * 179.30198 * 6 5 3 33 33 H 1.09003 * 109.47077 * 299.30034 * 6 5 3 34 34 H 1.08998 * 110.74416 * 337.59527 * 7 5 3 35 35 H 1.09005 * 110.73782 * 100.92373 * 7 5 3 36 36 H 1.09004 * 110.58219 * 278.82539 * 8 7 5 37 37 H 1.08998 * 110.82041 * 155.82121 * 8 7 5 38 38 H 0.96994 * 120.00130 * 0.02562 * 12 10 9 39 39 H 0.96998 * 119.99789 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.91270 * 266.08779 * 27 9 8 41 41 H 1.08998 * 109.91467 * 144.80373 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5664 1.2747 0.0006 6 6 4.1341 0.5711 1.2349 7 6 4.0269 2.7503 -0.0359 8 6 5.2478 2.7045 -0.9916 9 7 4.8437 1.7122 -2.0141 10 6 5.0750 1.7730 -3.3404 11 8 4.6827 0.8809 -4.0675 12 7 5.7415 2.8225 -3.8607 13 6 5.9924 2.8889 -5.3026 14 1 5.1475 2.4568 -5.8387 15 6 6.1671 4.3275 -5.7163 16 1 6.0986 5.1135 -4.9790 17 6 6.4156 4.6399 -7.0360 18 7 6.4995 3.6826 -7.9339 19 14 6.6329 6.4230 -7.5487 20 1 7.7839 7.0114 -6.8180 21 1 6.8871 6.4903 -9.0102 22 1 5.3997 7.1848 -7.2256 23 6 7.2631 2.1045 -5.6358 24 9 7.1008 0.7690 -5.2517 25 9 7.5030 2.1684 -7.0126 26 9 8.3475 2.6592 -4.9477 27 6 4.1356 0.6441 -1.2839 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.8221 -0.4733 1.2333 32 1 5.2226 0.6253 1.2155 33 1 3.7619 1.0601 2.1352 34 1 3.2429 3.3894 -0.4420 35 1 4.3246 3.0864 0.9574 36 1 6.1382 2.3685 -0.4600 37 1 5.4191 3.6793 -1.4482 38 1 6.0550 3.5338 -3.2806 39 1 6.6747 3.9024 -8.8623 40 1 4.8313 -0.1551 -1.0283 41 1 3.3236 0.2513 -1.8959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:26 Heat of formation + Delta-G solvation = -262.612849 kcal Electronic energy + Delta-G solvation = -31257.106853 eV Core-core repulsion = 26336.545396 eV Total energy + Delta-G solvation = -4920.561457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.40308 -48.03441 -47.71528 -42.13527 -40.97322 -38.95912 -37.52127 -36.49637 -34.69110 -33.92361 -30.72979 -30.30736 -28.66029 -27.41306 -26.56409 -25.28660 -23.65813 -23.28373 -21.24770 -20.72198 -19.77855 -18.88353 -18.77094 -18.61039 -18.37284 -17.88307 -17.64646 -17.30026 -16.99388 -16.61777 -16.45980 -15.49581 -15.14388 -15.01213 -14.92386 -14.68313 -14.54556 -14.44454 -14.28813 -14.21611 -14.05724 -13.94160 -13.87646 -13.66125 -13.40930 -13.04759 -13.03530 -12.93457 -12.78146 -12.64472 -12.59347 -12.22947 -12.11515 -11.84874 -11.76087 -11.60623 -11.47079 -11.28494 -10.67843 -10.24097 -9.61094 -8.20913 -6.52437 1.01646 1.43164 1.49132 1.50049 1.58756 1.69646 2.06309 2.36674 2.54861 2.94116 2.99468 3.20529 3.41018 3.69536 3.78712 3.87115 3.92411 4.11363 4.17511 4.26069 4.28577 4.31082 4.51062 4.59795 4.65320 4.70809 4.81113 4.86289 4.89387 4.97833 5.10114 5.20194 5.31805 5.35753 5.40183 5.53881 5.64386 6.05429 6.52218 6.60267 6.99807 7.17872 7.56392 8.71748 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.003278 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.423439 B = 8540.116891 C = 8966.794037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.532 6.532 5 C -0.061 4.061 6 C -0.130 4.130 7 C -0.111 4.111 8 C 0.095 3.905 9 N -0.644 5.644 10 C 0.715 3.285 11 O -0.628 6.628 12 N -0.716 5.716 13 C 0.270 3.730 14 H 0.043 0.957 15 C -0.563 4.563 16 H 0.092 0.908 17 C 0.016 3.984 18 N -0.874 5.874 19 Si 0.985 3.015 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.264 1.264 23 C 0.414 3.586 24 F -0.219 7.219 25 F -0.150 7.150 26 F -0.202 7.202 27 C 0.138 3.862 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.409 0.591 39 H 0.269 0.731 40 H 0.100 0.900 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -3.231 20.597 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.421 6.421 5 C -0.063 4.063 6 C -0.187 4.187 7 C -0.149 4.149 8 C -0.026 4.026 9 N -0.382 5.382 10 C 0.417 3.583 11 O -0.509 6.509 12 N -0.370 5.370 13 C 0.162 3.838 14 H 0.061 0.939 15 C -0.599 4.599 16 H 0.110 0.890 17 C -0.190 4.190 18 N -0.508 5.508 19 Si 0.808 3.192 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.189 1.189 23 C 0.358 3.642 24 F -0.201 7.201 25 F -0.132 7.132 26 F -0.184 7.184 27 C 0.014 3.986 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.246 0.754 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.966 -3.664 19.742 20.684 hybrid contribution 0.021 0.697 -0.813 1.071 sum -4.945 -2.967 18.929 19.788 Atomic orbital electron populations 1.23558 0.74868 1.05796 1.02368 1.86500 1.24900 1.32595 1.83419 1.23879 0.92330 0.81272 0.70951 1.90646 1.67663 1.37321 1.46475 1.21546 0.86061 0.99955 0.98699 1.21921 1.03022 1.00810 0.92950 1.22898 0.97274 0.92367 1.02409 1.22907 0.98441 0.92886 0.88399 1.47812 1.60362 1.26379 1.03669 1.15654 0.79037 0.82375 0.81189 1.90886 1.59206 1.41129 1.59690 1.44975 1.59909 1.23526 1.08603 1.19196 0.89075 0.97040 0.78450 0.93879 1.21171 1.54043 0.89611 0.95109 0.89000 1.26007 0.93567 1.03175 0.96222 1.70535 1.43831 1.33503 1.02964 0.85193 0.79276 0.77664 0.77084 1.18777 1.20948 1.18878 1.23270 0.88653 0.76652 0.75648 1.93064 1.95826 1.39607 1.91555 1.93376 1.95068 1.95392 1.29315 1.92981 1.59432 1.85631 1.80315 1.21919 0.96554 0.89930 0.90202 0.91160 0.93018 0.84929 0.90421 0.88448 0.90069 0.91225 0.85278 0.87351 0.89380 0.75430 0.92109 0.88244 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -7.58 10.46 -51.41 -0.54 -8.11 16 3 C 0.47 11.19 6.37 71.24 0.45 11.65 16 4 O -0.53 -15.56 15.18 21.99 0.33 -15.23 16 5 C -0.06 -1.13 0.90 -52.04 -0.05 -1.18 16 6 C -0.13 -1.35 8.15 71.98 0.59 -0.77 16 7 C -0.11 -1.94 5.98 31.87 0.19 -1.75 16 8 C 0.10 1.88 6.95 86.79 0.60 2.48 16 9 N -0.64 -19.73 3.29 -827.02 -2.72 -22.45 16 10 C 0.72 30.39 8.07 179.06 1.45 31.84 16 11 O -0.63 -32.62 15.25 -3.98 -0.06 -32.68 16 12 N -0.72 -30.40 4.96 -461.41 -2.29 -32.69 16 13 C 0.27 13.99 2.21 44.25 0.10 14.09 16 14 H 0.04 2.60 7.58 -2.39 -0.02 2.58 16 15 C -0.56 -28.83 8.47 25.60 0.22 -28.61 16 16 H 0.09 4.31 7.74 -2.92 -0.02 4.29 16 17 C 0.02 0.82 5.20 84.65 0.44 1.26 16 18 N -0.87 -49.04 9.50 21.45 0.20 -48.84 16 19 Si 0.98 40.73 29.54 68.60 2.03 42.75 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 C 0.41 21.93 2.81 71.98 0.20 22.13 16 24 F -0.22 -11.63 15.67 44.97 0.70 -10.92 16 25 F -0.15 -8.61 12.91 44.97 0.58 -8.03 16 26 F -0.20 -9.95 16.94 44.97 0.76 -9.19 16 27 C 0.14 3.50 6.27 86.53 0.54 4.04 16 28 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 0.79 8.13 -2.39 -0.02 0.77 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.62 6.90 -2.39 -0.02 1.60 16 35 H 0.13 1.30 7.85 -2.38 -0.02 1.29 16 36 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.09 1.71 6.82 -2.39 -0.02 1.69 16 38 H 0.41 14.53 6.87 -92.71 -0.64 13.89 16 39 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.10 2.14 7.68 -2.39 -0.02 2.13 16 41 H 0.05 1.65 7.57 -2.39 -0.02 1.63 16 Total: -1.00 -75.11 351.24 5.38 -69.73 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.45 Total: 18.86 kcal Atomic # 6 Polarization: 50.88 SS G_CDS: 5.93 Total: 56.81 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.81 Total: -103.98 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -0.26 Total: -56.02 kcal Atomic # 9 Polarization: -30.19 SS G_CDS: 2.05 Total: -28.14 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -75.11 5.38 -69.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.885 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds