Wall clock time and date at job start Tue Mar 31 2020 20:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99663 * 2 1 4 4 O 1.20824 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99965 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.88400 * 303.87957 * 5 3 2 7 7 C 1.55154 * 111.00327 * 179.97438 * 5 3 2 8 8 C 1.54329 * 102.94164 * 206.42204 * 7 5 3 9 9 N 1.47020 * 107.26616 * 22.19152 * 8 7 5 10 10 C 1.34782 * 125.64729 * 181.02460 * 9 8 7 11 11 O 1.21581 * 120.00506 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99607 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99735 * 179.72635 * 12 10 9 14 14 H 1.09000 * 109.47329 * 325.27773 * 13 12 10 15 15 C 1.50706 * 109.47121 * 205.28004 * 13 12 10 16 16 H 1.08006 * 119.99481 * 265.31039 * 15 13 12 17 17 C 1.37873 * 120.00348 * 85.30818 * 15 13 12 18 18 N 1.31515 * 120.00107 * 185.04362 * 17 15 13 19 19 Si 1.86804 * 119.99730 * 5.04586 * 17 15 13 20 20 H 1.48502 * 109.47037 * 84.64656 * 19 17 15 21 21 H 1.48503 * 109.46868 * 204.64704 * 19 17 15 22 22 H 1.48504 * 109.47132 * 324.64872 * 19 17 15 23 23 C 1.52993 * 109.47127 * 85.28086 * 13 12 10 24 24 F 1.39899 * 109.47368 * 64.16116 * 23 13 12 25 25 F 1.39902 * 109.47289 * 184.16576 * 23 13 12 26 26 F 1.39898 * 109.47111 * 304.15888 * 23 13 12 27 27 C 1.47425 * 108.71042 * 1.28797 * 9 8 7 28 28 H 1.09001 * 109.46818 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47270 * 299.99692 * 1 2 3 30 30 H 1.08993 * 109.47392 * 60.00269 * 1 2 3 31 31 H 1.09003 * 109.47074 * 296.12001 * 6 5 3 32 32 H 1.09002 * 109.47454 * 56.11883 * 6 5 3 33 33 H 1.08994 * 109.47062 * 176.12132 * 6 5 3 34 34 H 1.08996 * 110.72092 * 88.06253 * 7 5 3 35 35 H 1.08998 * 110.72326 * 324.78404 * 7 5 3 36 36 H 1.08997 * 109.88327 * 262.77521 * 8 7 5 37 37 H 1.08998 * 110.01019 * 141.67865 * 8 7 5 38 38 H 0.97001 * 120.00281 * 0.02562 * 12 10 9 39 39 H 0.97001 * 119.99992 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.36509 * 94.48157 * 27 9 8 41 41 H 1.08997 * 110.36948 * 216.80298 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1532 0.5075 1.1858 7 6 4.0458 2.7506 -0.0011 8 6 5.4334 2.6629 -0.6709 9 7 5.4575 1.4254 -1.4643 10 6 6.5028 0.9757 -2.1867 11 8 6.4099 -0.0656 -2.8074 12 7 7.6511 1.6804 -2.2210 13 6 8.7893 1.1887 -3.0014 14 1 8.8135 0.0997 -2.9620 15 6 10.0685 1.7406 -2.4266 16 1 10.5005 2.6413 -2.8372 17 6 10.6871 1.0959 -1.3766 18 7 11.7473 1.6295 -0.8101 19 14 10.0194 -0.5356 -0.7586 20 1 10.5694 -1.6404 -1.5846 21 1 10.4202 -0.7297 0.6581 22 1 8.5377 -0.5336 -0.8580 23 6 8.6455 1.6434 -4.4550 24 9 8.7098 3.0396 -4.5155 25 9 9.6809 1.0953 -5.2198 26 9 7.4143 1.2110 -4.9593 27 6 4.1471 0.7608 -1.3440 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 3.8353 0.9782 2.1161 32 1 3.8010 -0.5237 1.1615 33 1 5.2413 0.5214 1.1250 34 1 4.1326 3.1282 1.0176 35 1 3.3726 3.3746 -0.5889 36 1 6.2116 2.6297 0.0915 37 1 5.5885 3.5235 -1.3216 38 1 7.7255 2.5110 -1.7255 39 1 12.1828 1.1757 -0.0717 40 1 3.4998 1.0456 -2.1735 41 1 4.2719 -0.3215 -1.3135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:39 Heat of formation + Delta-G solvation = -266.909767 kcal Electronic energy + Delta-G solvation = -31296.678599 eV Core-core repulsion = 26375.930813 eV Total energy + Delta-G solvation = -4920.747786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.04490 -46.55059 -46.54198 -41.16988 -39.73121 -37.80304 -36.61715 -34.76688 -33.11620 -32.37275 -29.83405 -29.12506 -27.98579 -26.75726 -24.97152 -23.96037 -22.73789 -21.28007 -19.93802 -19.60677 -18.54397 -17.68703 -17.50530 -17.44283 -16.81228 -16.78705 -16.60947 -16.41121 -15.47543 -15.31106 -14.57699 -14.44417 -14.01321 -13.90841 -13.65159 -13.45473 -13.33584 -13.10564 -13.00960 -12.95197 -12.82897 -12.73882 -12.69246 -12.62911 -12.52757 -12.29269 -12.18825 -11.73759 -11.72041 -11.24214 -11.14549 -11.09280 -11.01590 -10.67521 -10.60001 -10.19194 -9.83172 -9.69465 -8.99756 -8.60884 -8.21278 -6.55083 -4.70128 1.86781 2.33069 2.93492 3.14649 3.20316 3.31474 3.60392 3.92358 3.99819 4.10400 4.22818 4.40195 4.52924 4.67802 4.80800 4.88072 4.91201 4.95666 5.09142 5.17609 5.21525 5.21809 5.36832 5.44604 5.55984 5.57008 5.64036 5.66401 5.76066 5.87234 5.98713 6.08651 6.22408 6.41370 6.88392 7.19825 7.41321 7.45684 7.88885 8.51186 8.55984 9.00805 9.12771 10.52856 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.003774 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.957328 B = 7418.145039 C = 8192.550564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.482 3.518 4 O -0.503 6.503 5 C -0.072 4.072 6 C -0.135 4.135 7 C -0.108 4.108 8 C 0.099 3.901 9 N -0.641 5.641 10 C 0.714 3.286 11 O -0.588 6.588 12 N -0.725 5.725 13 C 0.222 3.778 14 H 0.088 0.912 15 C -0.537 4.537 16 H 0.095 0.905 17 C 0.100 3.900 18 N -0.859 5.859 19 Si 0.869 3.131 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.251 1.251 23 C 0.439 3.561 24 F -0.190 7.190 25 F -0.185 7.185 26 F -0.194 7.194 27 C 0.147 3.853 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.066 0.934 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 -0.487 5.043 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.324 3.676 4 O -0.389 6.389 5 C -0.074 4.074 6 C -0.192 4.192 7 C -0.146 4.146 8 C -0.024 4.024 9 N -0.381 5.381 10 C 0.417 3.583 11 O -0.466 6.466 12 N -0.380 5.380 13 C 0.118 3.882 14 H 0.105 0.895 15 C -0.574 4.574 16 H 0.113 0.887 17 C -0.110 4.110 18 N -0.491 5.491 19 Si 0.694 3.306 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.175 1.175 23 C 0.384 3.616 24 F -0.172 7.172 25 F -0.167 7.167 26 F -0.176 7.176 27 C 0.022 3.978 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.190 -0.996 4.628 17.830 hybrid contribution -0.509 -0.174 0.407 0.675 sum -17.699 -1.170 5.034 18.439 Atomic orbital electron populations 1.23300 0.76231 1.03852 1.02563 1.86537 1.23435 1.33147 1.83746 1.23279 0.91090 0.81389 0.71844 1.90662 1.66855 1.36368 1.45059 1.21779 0.87013 0.99398 0.99259 1.21759 1.02442 1.00184 0.94822 1.22683 0.95902 0.93211 1.02804 1.22018 0.97400 0.87924 0.95071 1.47572 1.12816 1.25134 1.52600 1.15907 0.79556 0.83744 0.79106 1.90882 1.82514 1.24472 1.48691 1.46874 1.11392 1.27078 1.52668 1.19893 0.87100 0.98582 0.82602 0.89487 1.20802 1.03633 1.14213 1.18793 0.88733 1.24973 0.93840 0.97451 0.94709 1.69869 1.18911 1.38354 1.22008 0.86915 0.81414 0.83744 0.78511 1.19195 1.20763 1.17478 1.21617 0.72555 0.74823 0.92647 1.93074 1.96049 1.30895 1.97195 1.93100 1.59529 1.85699 1.78340 1.93143 1.45026 1.89604 1.89788 1.21868 0.83834 0.99007 0.93055 0.87953 0.91881 0.91789 0.91678 0.90866 0.90303 0.89065 0.89016 0.90838 0.90850 0.76789 0.91463 0.91558 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.64 10.38 -39.25 -0.41 -4.05 16 3 C 0.48 5.52 6.67 36.01 0.24 5.76 16 4 O -0.50 -6.68 15.46 -18.75 -0.29 -6.97 16 5 C -0.07 -0.79 0.90 -153.39 -0.14 -0.93 16 6 C -0.13 -1.32 8.52 37.16 0.32 -1.01 16 7 C -0.11 -1.10 5.58 -24.89 -0.14 -1.24 16 8 C 0.10 1.19 5.83 -3.06 -0.02 1.17 16 9 N -0.64 -10.06 3.31 -176.10 -0.58 -10.65 16 10 C 0.71 14.43 7.76 -86.91 -0.67 13.75 16 11 O -0.59 -13.84 15.21 5.29 0.08 -13.76 16 12 N -0.72 -14.83 4.89 -59.81 -0.29 -15.12 16 13 C 0.22 5.13 1.45 -69.08 -0.10 5.03 16 14 H 0.09 2.14 5.33 -51.93 -0.28 1.87 16 15 C -0.54 -13.57 8.68 -34.44 -0.30 -13.86 16 16 H 0.09 2.59 7.69 -52.48 -0.40 2.19 16 17 C 0.10 2.58 5.47 -17.82 -0.10 2.48 16 18 N -0.86 -23.20 13.96 55.43 0.77 -22.42 16 19 Si 0.87 19.88 26.92 -169.99 -4.58 15.31 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.25 -5.81 6.80 56.52 0.38 -5.42 16 23 C 0.44 9.89 2.83 37.15 0.11 9.99 16 24 F -0.19 -4.16 16.65 2.25 0.04 -4.12 16 25 F -0.19 -4.19 17.12 2.25 0.04 -4.16 16 26 F -0.19 -4.37 15.59 2.25 0.04 -4.33 16 27 C 0.15 1.98 5.84 -2.41 -0.01 1.97 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 34 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 35 H 0.09 0.97 7.39 -51.93 -0.38 0.58 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.40 7.33 7.58 -40.82 -0.31 7.02 16 39 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 41 H 0.09 1.30 7.95 -51.93 -0.41 0.89 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -31.13 355.67 -4.71 -35.84 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.14 Total: 4.65 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 0.25 Total: 24.43 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.10 Total: -48.19 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.62 Total: -24.78 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 0.11 Total: -12.61 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.58 Total: 15.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.13 -4.71 -35.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.072 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds