Wall clock time and date at job start Tue Mar 31 2020 20:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99663 * 2 1 4 4 O 1.20824 * 120.00160 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99965 * 180.02562 * 3 2 1 6 6 C 1.52997 * 110.88400 * 303.87957 * 5 3 2 7 7 C 1.55154 * 111.00327 * 179.97438 * 5 3 2 8 8 C 1.54329 * 102.94164 * 206.42204 * 7 5 3 9 9 N 1.47020 * 107.26616 * 22.19152 * 8 7 5 10 10 C 1.34782 * 125.64729 * 181.02460 * 9 8 7 11 11 O 1.21581 * 120.00506 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99607 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99735 * 179.72635 * 12 10 9 14 14 H 1.09000 * 109.47329 * 325.27773 * 13 12 10 15 15 C 1.50706 * 109.47121 * 205.28004 * 13 12 10 16 16 H 1.08006 * 119.99481 * 265.31039 * 15 13 12 17 17 C 1.37873 * 120.00348 * 85.30818 * 15 13 12 18 18 N 1.31515 * 120.00107 * 185.04362 * 17 15 13 19 19 Si 1.86804 * 119.99730 * 5.04586 * 17 15 13 20 20 H 1.48502 * 109.47037 * 84.64656 * 19 17 15 21 21 H 1.48503 * 109.46868 * 204.64704 * 19 17 15 22 22 H 1.48504 * 109.47132 * 324.64872 * 19 17 15 23 23 C 1.52993 * 109.47127 * 85.28086 * 13 12 10 24 24 F 1.39899 * 109.47368 * 64.16116 * 23 13 12 25 25 F 1.39902 * 109.47289 * 184.16576 * 23 13 12 26 26 F 1.39898 * 109.47111 * 304.15888 * 23 13 12 27 27 C 1.47425 * 108.71042 * 1.28797 * 9 8 7 28 28 H 1.09001 * 109.46818 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47270 * 299.99692 * 1 2 3 30 30 H 1.08993 * 109.47392 * 60.00269 * 1 2 3 31 31 H 1.09003 * 109.47074 * 296.12001 * 6 5 3 32 32 H 1.09002 * 109.47454 * 56.11883 * 6 5 3 33 33 H 1.08994 * 109.47062 * 176.12132 * 6 5 3 34 34 H 1.08996 * 110.72092 * 88.06253 * 7 5 3 35 35 H 1.08998 * 110.72326 * 324.78404 * 7 5 3 36 36 H 1.08997 * 109.88327 * 262.77521 * 8 7 5 37 37 H 1.08998 * 110.01019 * 141.67865 * 8 7 5 38 38 H 0.97001 * 120.00281 * 0.02562 * 12 10 9 39 39 H 0.97001 * 119.99992 * 180.02562 * 18 17 15 40 40 H 1.08996 * 110.36509 * 94.48157 * 27 9 8 41 41 H 1.08997 * 110.36948 * 216.80298 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.1532 0.5075 1.1858 7 6 4.0458 2.7506 -0.0011 8 6 5.4334 2.6629 -0.6709 9 7 5.4575 1.4254 -1.4643 10 6 6.5028 0.9757 -2.1867 11 8 6.4099 -0.0656 -2.8074 12 7 7.6511 1.6804 -2.2210 13 6 8.7893 1.1887 -3.0014 14 1 8.8135 0.0997 -2.9620 15 6 10.0685 1.7406 -2.4266 16 1 10.5005 2.6413 -2.8372 17 6 10.6871 1.0959 -1.3766 18 7 11.7473 1.6295 -0.8101 19 14 10.0194 -0.5356 -0.7586 20 1 10.5694 -1.6404 -1.5846 21 1 10.4202 -0.7297 0.6581 22 1 8.5377 -0.5336 -0.8580 23 6 8.6455 1.6434 -4.4550 24 9 8.7098 3.0396 -4.5155 25 9 9.6809 1.0953 -5.2198 26 9 7.4143 1.2110 -4.9593 27 6 4.1471 0.7608 -1.3440 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 3.8353 0.9782 2.1161 32 1 3.8010 -0.5237 1.1615 33 1 5.2413 0.5214 1.1250 34 1 4.1326 3.1282 1.0176 35 1 3.3726 3.3746 -0.5889 36 1 6.2116 2.6297 0.0915 37 1 5.5885 3.5235 -1.3216 38 1 7.7255 2.5110 -1.7255 39 1 12.1828 1.1757 -0.0717 40 1 3.4998 1.0456 -2.1735 41 1 4.2719 -0.3215 -1.3135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:38 Heat of formation + Delta-G solvation = -286.953876 kcal Electronic energy + Delta-G solvation = -31297.547777 eV Core-core repulsion = 26375.930813 eV Total energy + Delta-G solvation = -4921.616963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.87226 -48.37971 -48.36169 -42.12184 -41.04262 -39.02294 -37.52156 -36.56270 -34.62333 -33.94730 -30.91328 -30.71836 -28.63121 -27.79485 -26.89505 -25.08357 -23.67227 -23.04760 -21.17578 -20.81311 -20.17822 -19.32050 -19.10191 -18.55031 -18.45315 -18.33886 -17.73235 -17.50278 -17.05404 -16.53268 -16.21217 -15.52448 -15.41361 -15.23972 -14.98305 -14.93804 -14.86152 -14.79571 -14.59348 -14.55774 -14.48831 -14.21587 -14.12273 -13.72924 -13.62170 -13.53655 -13.12170 -12.98413 -12.92111 -12.68138 -12.52750 -12.10908 -12.00126 -11.88816 -11.82176 -11.81688 -11.53394 -11.34515 -10.97090 -10.24485 -9.58867 -8.53789 -6.72723 0.95447 1.25290 1.35394 1.41605 1.48038 1.73197 1.92990 2.19227 2.26219 2.72113 3.01863 3.13527 3.32728 3.33053 3.37322 3.65999 3.69263 3.85876 4.04444 4.17703 4.28854 4.33318 4.37977 4.54206 4.54969 4.64691 4.69988 4.77193 4.79686 4.90362 4.95166 5.01227 5.18517 5.23799 5.29616 5.49165 5.84666 6.07329 6.45190 6.59331 7.00105 7.01738 7.54865 8.58105 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015289 B = 0.003774 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.957328 B = 7418.145039 C = 8192.550564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.487 3.513 4 O -0.522 6.522 5 C -0.065 4.065 6 C -0.132 4.132 7 C -0.098 4.098 8 C 0.093 3.907 9 N -0.637 5.637 10 C 0.712 3.288 11 O -0.625 6.625 12 N -0.722 5.722 13 C 0.231 3.769 14 H 0.075 0.925 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.068 3.932 18 N -0.895 5.895 19 Si 0.923 3.077 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.256 1.256 23 C 0.441 3.559 24 F -0.186 7.186 25 F -0.187 7.187 26 F -0.192 7.192 27 C 0.143 3.857 28 H 0.130 0.870 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.407 0.593 39 H 0.281 0.719 40 H 0.066 0.934 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.894 -0.649 6.377 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.330 3.670 4 O -0.411 6.411 5 C -0.067 4.067 6 C -0.189 4.189 7 C -0.136 4.136 8 C -0.030 4.030 9 N -0.376 5.376 10 C 0.414 3.586 11 O -0.506 6.506 12 N -0.378 5.378 13 C 0.126 3.874 14 H 0.093 0.907 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.746 3.254 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.180 1.180 23 C 0.385 3.615 24 F -0.168 7.168 25 F -0.168 7.168 26 F -0.174 7.174 27 C 0.019 3.981 28 H 0.148 0.852 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.244 0.756 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.970 -1.130 5.995 19.927 hybrid contribution -0.080 -0.097 -0.058 0.138 sum -19.050 -1.227 5.937 19.992 Atomic orbital electron populations 1.23596 0.74478 1.05801 1.02751 1.86527 1.25188 1.32488 1.83273 1.23232 0.91065 0.81421 0.71310 1.90658 1.67269 1.37027 1.46129 1.21721 0.86955 0.99927 0.98096 1.21756 1.01567 1.00446 0.95123 1.22676 0.94310 0.92633 1.03969 1.22296 0.99098 0.86412 0.95144 1.47501 1.12285 1.26286 1.51516 1.15888 0.80100 0.83202 0.79384 1.90852 1.83291 1.26023 1.50398 1.46343 1.11163 1.27556 1.52736 1.19570 0.87071 0.97753 0.83016 0.90729 1.20706 1.04716 1.13352 1.18853 0.91436 1.25482 0.93905 0.99718 0.94823 1.69930 1.20192 1.39814 1.23022 0.86092 0.80365 0.80422 0.78489 1.19507 1.19554 1.17951 1.21530 0.72559 0.75008 0.92411 1.93080 1.96031 1.30505 1.97163 1.93094 1.59631 1.85755 1.78365 1.93146 1.44906 1.89625 1.89724 1.21970 0.82810 0.98456 0.94839 0.85227 0.91369 0.91959 0.89626 0.90658 0.91401 0.86568 0.89193 0.89838 0.90023 0.75590 0.90959 0.91555 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.70 10.38 -51.38 -0.53 -7.23 16 3 C 0.49 10.15 6.67 71.24 0.48 10.63 16 4 O -0.52 -12.85 15.46 21.97 0.34 -12.51 16 5 C -0.06 -1.28 0.90 -51.46 -0.05 -1.33 16 6 C -0.13 -2.26 8.52 71.98 0.61 -1.64 16 7 C -0.10 -1.73 5.58 31.78 0.18 -1.55 16 8 C 0.09 2.01 5.83 86.73 0.51 2.52 16 9 N -0.64 -19.15 3.31 -829.32 -2.75 -21.90 16 10 C 0.71 28.17 7.76 179.05 1.39 29.56 16 11 O -0.62 -29.21 15.21 -3.97 -0.06 -29.27 16 12 N -0.72 -29.01 4.89 -461.41 -2.26 -31.27 16 13 C 0.23 10.64 1.45 44.24 0.06 10.70 16 14 H 0.08 3.66 5.33 -2.39 -0.01 3.65 16 15 C -0.54 -27.36 8.68 25.60 0.22 -27.14 16 16 H 0.07 3.77 7.69 -2.91 -0.02 3.74 16 17 C 0.07 3.47 5.47 84.65 0.46 3.93 16 18 N -0.90 -48.46 13.96 21.45 0.30 -48.16 16 19 Si 0.92 40.79 26.92 68.60 1.85 42.64 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.26 -11.42 6.80 99.48 0.68 -10.74 16 23 C 0.44 19.72 2.83 71.98 0.20 19.93 16 24 F -0.19 -8.05 16.65 44.97 0.75 -7.30 16 25 F -0.19 -8.44 17.12 44.97 0.77 -7.67 16 26 F -0.19 -8.57 15.59 44.97 0.70 -7.87 16 27 C 0.14 3.69 5.84 86.93 0.51 4.20 16 28 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.26 8.04 -2.39 -0.02 1.24 16 33 H 0.07 1.34 7.91 -2.39 -0.02 1.32 16 34 H 0.12 1.52 8.05 -2.39 -0.02 1.50 16 35 H 0.09 1.67 7.39 -2.39 -0.02 1.65 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.41 14.64 7.58 -92.71 -0.70 13.94 16 39 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.07 1.71 8.03 -2.39 -0.02 1.69 16 41 H 0.08 2.26 7.95 -2.39 -0.02 2.24 16 Total: -1.00 -66.04 355.67 5.23 -60.80 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.35 Total: 18.41 kcal Atomic # 6 Polarization: 45.56 SS G_CDS: 5.77 Total: 51.33 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -4.70 Total: -101.32 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -0.25 Total: -49.01 kcal Atomic # 9 Polarization: -25.07 SS G_CDS: 2.22 Total: -22.85 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.85 Total: 42.64 kcal Total: -66.04 5.23 -60.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.151 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -292.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds