Wall clock time and date at job start Tue Mar 31 2020 20:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31236 * 124.05129 * 2 1 4 4 N 1.27342 * 120.03957 * 179.97438 * 3 2 1 5 5 S 1.56648 * 109.73578 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05789 * 179.97438 * 2 1 3 7 7 C 1.47174 * 128.47411 * 0.06826 * 6 2 1 8 8 O 1.21619 * 119.99800 * 359.96702 * 7 6 2 9 9 N 1.34772 * 119.99942 * 179.97438 * 7 6 2 10 10 C 1.47490 * 125.66135 * 0.02562 * 9 7 6 11 11 C 1.55029 * 104.89958 * 204.02381 * 10 9 7 12 12 C 1.54514 * 101.51628 * 323.62029 * 11 10 9 13 13 C 1.47183 * 125.66558 * 179.71316 * 9 7 6 14 14 C 1.52521 * 110.05415 * 153.10263 * 12 11 10 15 15 N 1.47299 * 108.38240 * 72.02169 * 14 12 11 16 16 C 1.36935 * 121.06171 * 229.38856 * 15 14 12 17 17 H 1.08002 * 120.00222 * 153.85936 * 16 15 14 18 18 C 1.38814 * 120.00258 * 333.86931 * 16 15 14 19 19 N 1.31619 * 119.99385 * 343.61038 * 18 16 15 20 20 Si 1.86794 * 120.00116 * 163.60911 * 18 16 15 21 21 H 1.48497 * 109.47429 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47093 * 120.00196 * 20 18 16 23 23 H 1.48505 * 109.47015 * 239.99561 * 20 18 16 24 24 C 1.47160 * 117.88175 * 49.42088 * 15 14 12 25 25 C 1.53287 * 108.53959 * 308.88180 * 24 15 14 26 26 O 1.42071 * 110.33945 * 276.05273 * 12 11 10 27 27 H 1.08998 * 109.47374 * 270.02988 * 1 2 3 28 28 H 1.08998 * 109.47309 * 30.03254 * 1 2 3 29 29 H 1.09006 * 109.46927 * 150.03032 * 1 2 3 30 30 H 1.08995 * 110.35430 * 322.87875 * 10 9 7 31 31 H 1.09000 * 110.35339 * 85.16784 * 10 9 7 32 32 H 1.08998 * 111.01113 * 81.68190 * 11 10 9 33 33 H 1.09004 * 111.01260 * 205.52409 * 11 10 9 34 34 H 1.09001 * 109.90682 * 297.85859 * 13 9 7 35 35 H 1.09002 * 109.91004 * 59.12065 * 13 9 7 36 36 H 1.08998 * 109.68154 * 191.74804 * 14 12 11 37 37 H 1.09006 * 109.68106 * 312.26316 * 14 12 11 38 38 H 0.97008 * 119.99557 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.63141 * 68.59886 * 24 15 14 40 40 H 1.09004 * 109.62612 * 188.97909 * 24 15 14 41 41 H 1.09004 * 109.51229 * 172.80237 * 25 24 15 42 42 H 1.08998 * 109.51108 * 292.95491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2418 1.0873 0.0000 4 7 3.5121 0.9983 0.0005 5 16 3.9367 -0.5096 0.0017 6 6 2.2812 -1.1453 0.0005 7 6 1.8394 -2.5492 -0.0002 8 8 0.6522 -2.8131 -0.0009 9 7 2.7505 -3.5423 -0.0001 10 6 4.2148 -3.3659 0.0013 11 6 4.7748 -4.6763 -0.6089 12 6 3.7941 -5.7257 -0.0392 13 6 2.4495 -4.9830 0.0052 14 6 3.7154 -6.9292 -0.9729 15 7 4.9751 -7.6849 -0.8637 16 6 5.6703 -8.0645 -1.9807 17 1 6.7372 -8.2232 -1.9248 18 6 5.0041 -8.2450 -3.1850 19 7 3.6941 -8.3717 -3.1997 20 14 5.9666 -8.3081 -4.7846 21 1 7.4141 -8.1412 -4.4983 22 1 5.7403 -9.6178 -5.4472 23 1 5.5104 -7.2150 -5.6803 24 6 5.4622 -8.0197 0.4840 25 6 5.4805 -6.7399 1.3275 26 8 4.1935 -6.1170 1.2668 27 1 -0.3634 0.0005 1.0276 28 1 -0.3634 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5134 30 1 4.4943 -2.5111 -0.6146 31 1 4.5800 -3.2357 1.0201 32 1 4.7307 -4.6505 -1.6977 33 1 5.7921 -4.8640 -0.2653 34 1 1.9076 -5.2456 0.9138 35 1 1.8559 -5.2415 -0.8717 36 1 2.8793 -7.5652 -0.6823 37 1 3.5785 -6.5891 -1.9994 38 1 3.2284 -8.4976 -4.0413 39 1 4.7967 -8.7510 0.9427 40 1 6.4690 -8.4320 0.4174 41 1 5.7158 -6.9892 2.3622 42 1 6.2344 -6.0568 0.9362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972254762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:55 Heat of formation + Delta-G solvation = 16.520423 kcal Electronic energy + Delta-G solvation = -27951.489924 eV Core-core repulsion = 24059.934957 eV Total energy + Delta-G solvation = -3891.554968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10840 -41.61267 -40.09866 -37.63511 -36.25359 -34.42123 -33.27033 -33.03012 -31.01738 -29.97654 -28.92640 -28.05105 -27.26690 -25.33399 -24.37990 -23.54779 -22.63379 -20.67705 -20.29505 -19.73140 -18.96455 -18.42323 -17.62880 -17.24321 -17.05586 -16.70901 -16.26839 -16.13077 -15.77615 -15.48449 -15.33333 -15.11754 -14.54264 -14.44459 -14.33238 -14.08628 -13.92520 -13.83389 -13.63057 -13.38054 -13.10512 -12.87293 -12.66031 -12.62004 -12.48763 -12.41621 -12.10055 -11.98065 -11.81488 -11.39541 -11.14802 -11.11399 -10.95394 -10.82835 -10.74438 -10.45189 -9.91345 -8.70462 -7.88174 -5.33955 -1.41671 -0.30791 0.35479 0.78413 1.46663 1.50736 1.55125 1.59486 1.74128 2.49391 2.73505 2.77203 3.15093 3.27224 3.43139 3.44170 3.49766 3.84337 3.93635 4.17989 4.21584 4.24532 4.36027 4.41917 4.51040 4.57964 4.65207 4.67195 4.75147 4.77000 4.89434 4.94695 5.05505 5.11215 5.13393 5.17079 5.29328 5.54122 5.65310 6.13844 6.31362 6.40435 6.53216 6.73114 7.09176 7.78151 8.32087 9.18058 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.003373 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.579855 B = 8299.022877 C = 8632.967543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.100 3.900 3 N -0.271 5.271 4 N -0.293 5.293 5 S 0.504 5.496 6 C -0.313 4.313 7 C 0.615 3.385 8 O -0.546 6.546 9 N -0.605 5.605 10 C 0.095 3.905 11 C -0.134 4.134 12 C 0.095 3.905 13 C 0.134 3.866 14 C 0.174 3.826 15 N -0.608 5.608 16 C -0.254 4.254 17 H 0.076 0.924 18 C -0.047 4.047 19 N -0.937 5.937 20 Si 0.962 3.038 21 H -0.262 1.262 22 H -0.298 1.298 23 H -0.292 1.292 24 C 0.101 3.899 25 C 0.052 3.948 26 O -0.380 6.380 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.076 0.924 36 H -0.006 1.006 37 H 0.069 0.931 38 H 0.249 0.751 39 H 0.013 0.987 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 14.402 8.884 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.137 5.137 4 N -0.273 5.273 5 S 0.642 5.358 6 C -0.453 4.453 7 C 0.403 3.597 8 O -0.425 6.425 9 N -0.338 5.338 10 C -0.029 4.029 11 C -0.173 4.173 12 C 0.053 3.947 13 C 0.012 3.988 14 C 0.048 3.952 15 N -0.333 5.333 16 C -0.384 4.384 17 H 0.094 0.906 18 C -0.242 4.242 19 N -0.583 5.583 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.226 1.226 23 H -0.219 1.219 24 C -0.024 4.024 25 C -0.025 4.025 26 O -0.299 6.299 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.012 0.988 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.064 15.490 8.919 18.135 hybrid contribution -1.092 -1.339 -1.375 2.209 sum 1.972 14.150 7.543 16.156 Atomic orbital electron populations 1.20585 0.82668 1.05181 1.05129 1.23259 1.01115 0.84933 0.95526 1.70774 0.97271 1.28414 1.17194 1.78512 1.09534 1.19849 1.19392 1.82520 1.07325 0.97473 1.48531 1.27535 0.99994 0.98792 1.19002 1.16148 0.84642 0.81968 0.76984 1.90797 1.16458 1.83342 1.51913 1.48377 1.07732 1.06023 1.71629 1.22834 0.78203 0.98747 1.03088 1.23098 1.00670 0.92312 1.01184 1.22315 0.93175 0.94456 0.84735 1.21651 0.96134 0.78136 1.02912 1.20914 0.87191 0.89582 0.97553 1.44333 1.25025 1.62512 1.01386 1.19541 0.91187 1.40082 0.87580 0.90614 1.25722 0.96323 1.00585 1.01619 1.70173 1.08201 1.54327 1.25583 0.85288 0.78990 0.76505 0.80166 1.18596 1.22593 1.21886 1.21822 0.98750 0.95959 0.85876 1.23213 0.84407 0.93577 1.01316 1.87698 1.36814 1.78797 1.26602 0.88178 0.88247 0.89209 0.89317 0.87630 0.90584 0.87458 0.90098 0.90615 0.98751 0.91239 0.94169 0.96946 0.90725 0.86241 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.90 71.24 0.71 -0.75 16 2 C 0.10 2.34 7.00 42.65 0.30 2.64 16 3 N -0.27 -6.76 11.54 -48.18 -0.56 -7.32 16 4 N -0.29 -6.83 12.51 37.02 0.46 -6.37 16 5 S 0.50 9.18 19.60 -56.49 -1.11 8.07 16 6 C -0.31 -7.44 6.65 24.62 0.16 -7.27 16 7 C 0.62 17.51 7.84 86.59 0.68 18.19 16 8 O -0.55 -18.42 15.22 -4.09 -0.06 -18.48 16 9 N -0.60 -16.58 3.33 -816.43 -2.72 -19.30 16 10 C 0.09 2.04 5.75 86.88 0.50 2.54 16 11 C -0.13 -3.71 5.91 31.80 0.19 -3.53 16 12 C 0.10 3.19 0.83 -10.21 -0.01 3.18 16 13 C 0.13 4.31 6.25 86.48 0.54 4.85 16 14 C 0.17 7.72 3.95 86.07 0.34 8.06 16 15 N -0.61 -27.61 2.94 -698.62 -2.05 -29.66 16 16 C -0.25 -12.68 9.66 84.03 0.81 -11.87 16 17 H 0.08 3.63 7.88 -2.91 -0.02 3.61 16 18 C -0.05 -2.45 4.96 84.86 0.42 -2.03 16 19 N -0.94 -52.68 11.13 21.65 0.24 -52.44 16 20 Si 0.96 42.09 29.58 68.60 2.03 44.12 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 24 C 0.10 3.70 6.72 86.35 0.58 4.28 16 25 C 0.05 1.45 6.76 72.08 0.49 1.94 16 26 O -0.38 -12.17 10.21 -148.98 -1.52 -13.69 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.98 6.47 -2.38 -0.02 1.96 16 30 H 0.09 1.54 5.17 -13.83 -0.07 1.47 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 33 H 0.11 2.71 5.98 -2.38 -0.01 2.70 16 34 H 0.08 2.61 8.06 -2.39 -0.02 2.59 16 35 H 0.08 2.66 7.79 -2.39 -0.02 2.64 16 36 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.07 3.48 5.99 -2.38 -0.01 3.46 16 38 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 39 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.07 2.53 7.96 -2.38 -0.02 2.51 16 41 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.07 1.67 6.13 -2.39 -0.01 1.66 16 Total: -1.00 -65.51 346.01 1.42 -64.09 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.01 Total: 10.75 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 5.71 Total: 20.22 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -4.63 Total: -115.08 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.58 Total: -32.17 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 9.18 SS G_CDS: -1.11 Total: 8.07 kcal Total: -65.51 1.42 -64.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972254762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.611 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds