Wall clock time and date at job start Tue Mar 31 2020 20:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35704 * 116.99918 * 2 1 4 4 C 1.39060 * 119.89950 * 179.97438 * 3 2 1 5 5 C 1.37645 * 120.12475 * 179.97438 * 4 3 2 6 6 C 1.39777 * 119.92587 * 0.02562 * 5 4 3 7 7 C 1.47525 * 120.10181 * 180.02562 * 6 5 4 8 8 O 1.21591 * 120.00185 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00176 * 359.97438 * 7 6 5 10 10 C 1.46501 * 120.00542 * 180.02562 * 9 7 6 11 11 C 1.53002 * 110.63743 * 61.68644 * 10 9 7 12 12 C 1.55153 * 110.87349 * 184.93839 * 10 9 7 13 13 C 1.55131 * 101.48647 * 82.76438 * 12 10 9 14 14 N 1.47426 * 104.71847 * 37.29562 * 13 12 10 15 15 C 1.36945 * 125.64675 * 155.81671 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68946 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68852 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47026 * 108.70569 * 335.55014 * 14 13 12 24 24 C 1.39854 * 119.79970 * 0.27806 * 6 5 4 25 25 Cl 1.73610 * 120.06262 * 179.71985 * 24 6 5 26 26 C 1.37896 * 119.87170 * 359.42076 * 24 6 5 27 27 H 1.09004 * 109.46972 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47062 * 299.99899 * 1 2 3 29 29 H 1.09003 * 109.46934 * 60.00450 * 1 2 3 30 30 H 1.07997 * 119.93738 * 0.03209 * 4 3 2 31 31 H 1.08000 * 120.03756 * 179.97438 * 5 4 3 32 32 H 0.97002 * 119.99525 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.47385 * 298.31171 * 11 10 9 34 34 H 1.09001 * 109.47019 * 58.32004 * 11 10 9 35 35 H 1.09001 * 109.46551 * 178.31145 * 11 10 9 36 36 H 1.08999 * 111.00098 * 201.00812 * 12 10 9 37 37 H 1.08999 * 111.00620 * 324.81989 * 12 10 9 38 38 H 1.08994 * 110.50226 * 278.45550 * 13 12 10 39 39 H 1.09001 * 110.34274 * 156.05220 * 13 12 10 40 40 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.87851 * 120.70448 * 23 14 13 42 42 H 1.08997 * 109.88162 * 241.71678 * 23 14 13 43 43 H 1.08005 * 119.95962 * 180.27462 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4339 1.2795 0.0005 5 6 4.0636 2.5035 0.0000 6 6 3.3054 3.6777 -0.0005 7 6 3.9763 4.9916 -0.0017 8 8 3.3149 6.0119 -0.0017 9 7 5.3223 5.0611 -0.0017 10 6 5.9886 6.3658 -0.0022 11 6 5.6290 7.1555 1.2579 12 6 7.5263 6.2012 -0.1269 13 6 7.6960 6.0365 -1.6601 14 7 6.7000 6.9509 -2.2476 15 6 6.7646 7.5045 -3.4985 16 1 5.9783 8.1615 -3.8395 17 6 7.8409 7.2210 -4.3280 18 7 8.7990 6.4198 -3.9125 19 14 7.9287 7.9755 -6.0347 20 1 9.1677 7.5193 -6.7143 21 1 6.7452 7.5514 -6.8249 22 1 7.9435 9.4560 -5.9212 23 6 5.6224 7.1651 -1.2705 24 6 1.9089 3.6033 0.0054 25 17 0.9605 5.0575 0.0121 26 6 1.2866 2.3728 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 4.0196 0.3721 0.0004 31 1 5.1423 2.5565 0.0008 32 1 5.8499 4.2471 -0.0013 33 1 4.5543 7.3360 1.2793 34 1 5.9192 6.5843 2.1398 35 1 6.1575 8.1087 1.2524 36 1 8.0448 7.0895 0.2339 37 1 7.8680 5.3107 0.4006 38 1 7.4901 5.0088 -1.9588 39 1 8.7022 6.3263 -1.9632 40 1 9.5509 6.2215 -4.4924 41 1 5.5449 8.2257 -1.0308 42 1 4.6767 6.8070 -1.6772 43 1 0.2082 2.3137 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046707042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:27 Heat of formation + Delta-G solvation = -9.720345 kcal Electronic energy + Delta-G solvation = -27320.586366 eV Core-core repulsion = 23393.557056 eV Total energy + Delta-G solvation = -3927.029310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69922 -39.74521 -37.95089 -36.80354 -36.29304 -33.98843 -32.16113 -31.17736 -30.68820 -29.55365 -28.60250 -27.76036 -25.63056 -24.05396 -23.28188 -22.86244 -20.87322 -20.28286 -18.97694 -18.70269 -17.66764 -16.87606 -16.47396 -16.18550 -15.49279 -15.30943 -14.73901 -14.72169 -14.58300 -14.10735 -14.02706 -13.69864 -13.25802 -13.22597 -12.76737 -12.66791 -12.42743 -12.19467 -12.09467 -11.90109 -11.69963 -11.51829 -11.42568 -11.05314 -11.00232 -10.89805 -10.80233 -10.32831 -10.30228 -10.07873 -9.82538 -9.59651 -9.17905 -9.07613 -8.66126 -8.60497 -8.43619 -6.76194 -5.60863 -3.00963 0.65397 0.88553 2.06176 2.81921 2.87858 3.40746 3.44588 3.48091 3.49866 3.73158 4.38586 4.52500 4.53726 4.71950 4.75759 4.78450 4.90696 5.08587 5.13514 5.23008 5.28369 5.43777 5.53806 5.61286 5.75133 5.77399 5.82177 5.91419 6.07964 6.17864 6.21768 6.27131 6.39859 6.49311 6.56512 6.75458 6.89141 6.90701 7.20722 7.48770 7.67687 7.83145 7.90409 8.39852 8.57072 9.27782 9.88571 10.53547 11.43297 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003161 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.771692 B = 8855.241136 C = 9265.898456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.160 3.840 4 C -0.156 4.156 5 C -0.034 4.034 6 C -0.160 4.160 7 C 0.557 3.443 8 O -0.514 6.514 9 N -0.704 5.704 10 C 0.162 3.838 11 C -0.149 4.149 12 C -0.147 4.147 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.216 4.216 16 H 0.076 0.924 17 C -0.013 4.013 18 N -0.926 5.926 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.286 1.286 22 H -0.285 1.285 23 C 0.137 3.863 24 C 0.054 3.946 25 Cl -0.025 7.025 26 C -0.216 4.216 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.394 0.606 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.010 0.990 39 H 0.108 0.892 40 H 0.251 0.749 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 -12.998 12.821 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.113 3.887 4 C -0.174 4.174 5 C -0.053 4.053 6 C -0.165 4.165 7 C 0.343 3.657 8 O -0.391 6.391 9 N -0.355 5.355 10 C 0.076 3.924 11 C -0.207 4.207 12 C -0.186 4.186 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.344 4.344 16 H 0.094 0.906 17 C -0.208 4.208 18 N -0.575 5.575 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.212 1.212 23 C 0.010 3.990 24 C 0.026 3.974 25 Cl 0.005 6.995 26 C -0.235 4.235 27 H 0.122 0.878 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.028 0.972 39 H 0.126 0.874 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.449 -12.285 12.623 22.162 hybrid contribution -0.093 0.025 -1.004 1.008 sum -13.542 -12.260 11.619 21.650 Atomic orbital electron populations 1.23168 0.77821 1.04372 1.01861 1.86065 1.21903 1.26319 1.87908 1.19065 0.92213 0.83838 0.93554 1.20433 0.91203 0.98955 1.06854 1.21140 1.00148 0.90264 0.93722 1.19850 0.92233 0.94806 1.09578 1.17821 0.82429 0.88154 0.77312 1.90834 1.64261 1.35442 1.48560 1.45882 1.05652 1.09261 1.74737 1.21329 0.93030 0.82391 0.95664 1.22032 1.03270 0.99564 0.95853 1.23395 0.92301 1.01260 1.01603 1.21983 0.97725 0.92302 0.85196 1.44505 1.21179 1.54086 1.13253 1.19052 1.04715 1.21641 0.89007 0.90643 1.24744 0.97263 1.00094 0.98715 1.69759 1.11816 1.40149 1.35784 0.86154 0.76839 0.78681 0.83875 1.21621 1.21312 1.21202 1.21601 0.92670 0.96312 0.88371 1.20709 0.90942 0.88609 0.97122 1.98428 1.70595 1.34728 1.95797 1.21045 1.00853 0.90393 1.11246 0.87841 0.92239 0.92169 0.83945 0.83881 0.77115 0.90952 0.93204 0.91819 0.90481 0.91993 0.97238 0.87413 0.93813 0.95259 0.94638 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.84 10.48 -18.82 -0.20 -3.04 16 3 C 0.16 1.66 6.69 -39.03 -0.26 1.40 16 4 C -0.16 -1.57 9.97 -39.49 -0.39 -1.96 16 5 C -0.03 -0.38 9.53 -39.22 -0.37 -0.75 16 6 C -0.16 -2.25 5.88 -104.93 -0.62 -2.87 16 7 C 0.56 9.30 6.98 -12.47 -0.09 9.21 16 8 O -0.51 -9.89 10.90 5.29 0.06 -9.83 16 9 N -0.70 -11.23 5.10 -46.94 -0.24 -11.47 16 10 C 0.16 2.90 0.81 -129.99 -0.10 2.79 16 11 C -0.15 -2.36 8.40 37.16 0.31 -2.05 16 12 C -0.15 -2.65 6.11 -24.46 -0.15 -2.80 16 13 C 0.15 3.62 5.89 -2.41 -0.01 3.61 16 14 N -0.60 -15.80 3.39 -169.93 -0.58 -16.38 16 15 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 18 N -0.93 -26.95 10.08 55.49 0.56 -26.39 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.14 3.10 6.12 -3.06 -0.02 3.08 16 24 C 0.05 0.73 6.35 -39.10 -0.25 0.49 16 25 Cl -0.03 -0.36 26.01 -51.86 -1.35 -1.71 16 26 C -0.22 -2.34 8.80 -39.46 -0.35 -2.68 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.29 6.39 -52.49 -0.34 0.95 16 32 H 0.39 5.29 6.50 -40.82 -0.27 5.03 16 33 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 37 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.11 2.88 5.86 -51.93 -0.30 2.58 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.03 0.68 7.82 -51.93 -0.41 0.27 16 42 H 0.04 0.88 6.49 -51.93 -0.34 0.54 16 43 H 0.14 1.21 6.27 -52.48 -0.33 0.88 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -33.32 357.83 -8.54 -41.86 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.60 Total: 2.29 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.56 Total: 1.77 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.26 Total: -54.24 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.14 Total: -12.87 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.35 Total: -1.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.32 -8.54 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046707042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.139 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds