Wall clock time and date at job start Tue Mar 31 2020 20:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35704 * 116.99918 * 2 1 4 4 C 1.39060 * 119.89950 * 179.97438 * 3 2 1 5 5 C 1.37645 * 120.12475 * 179.97438 * 4 3 2 6 6 C 1.39777 * 119.92587 * 0.02562 * 5 4 3 7 7 C 1.47525 * 120.10181 * 180.02562 * 6 5 4 8 8 O 1.21591 * 120.00185 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00176 * 359.97438 * 7 6 5 10 10 C 1.46501 * 120.00542 * 180.02562 * 9 7 6 11 11 C 1.53002 * 110.63743 * 61.68644 * 10 9 7 12 12 C 1.55153 * 110.87349 * 184.93839 * 10 9 7 13 13 C 1.55131 * 101.48647 * 82.76438 * 12 10 9 14 14 N 1.47426 * 104.71847 * 37.29562 * 13 12 10 15 15 C 1.36945 * 125.64675 * 155.81671 * 14 13 12 16 16 H 1.07997 * 119.99756 * 179.68946 * 15 14 13 17 17 C 1.38805 * 119.99878 * 359.68852 * 15 14 13 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47026 * 108.70569 * 335.55014 * 14 13 12 24 24 C 1.39854 * 119.79970 * 0.27806 * 6 5 4 25 25 Cl 1.73610 * 120.06262 * 179.71985 * 24 6 5 26 26 C 1.37896 * 119.87170 * 359.42076 * 24 6 5 27 27 H 1.09004 * 109.46972 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47062 * 299.99899 * 1 2 3 29 29 H 1.09003 * 109.46934 * 60.00450 * 1 2 3 30 30 H 1.07997 * 119.93738 * 0.03209 * 4 3 2 31 31 H 1.08000 * 120.03756 * 179.97438 * 5 4 3 32 32 H 0.97002 * 119.99525 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.47385 * 298.31171 * 11 10 9 34 34 H 1.09001 * 109.47019 * 58.32004 * 11 10 9 35 35 H 1.09001 * 109.46551 * 178.31145 * 11 10 9 36 36 H 1.08999 * 111.00098 * 201.00812 * 12 10 9 37 37 H 1.08999 * 111.00620 * 324.81989 * 12 10 9 38 38 H 1.08994 * 110.50226 * 278.45550 * 13 12 10 39 39 H 1.09001 * 110.34274 * 156.05220 * 13 12 10 40 40 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.87851 * 120.70448 * 23 14 13 42 42 H 1.08997 * 109.88162 * 241.71678 * 23 14 13 43 43 H 1.08005 * 119.95962 * 180.27462 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4339 1.2795 0.0005 5 6 4.0636 2.5035 0.0000 6 6 3.3054 3.6777 -0.0005 7 6 3.9763 4.9916 -0.0017 8 8 3.3149 6.0119 -0.0017 9 7 5.3223 5.0611 -0.0017 10 6 5.9886 6.3658 -0.0022 11 6 5.6290 7.1555 1.2579 12 6 7.5263 6.2012 -0.1269 13 6 7.6960 6.0365 -1.6601 14 7 6.7000 6.9509 -2.2476 15 6 6.7646 7.5045 -3.4985 16 1 5.9783 8.1615 -3.8395 17 6 7.8409 7.2210 -4.3280 18 7 8.7990 6.4198 -3.9125 19 14 7.9287 7.9755 -6.0347 20 1 9.1677 7.5193 -6.7143 21 1 6.7452 7.5514 -6.8249 22 1 7.9435 9.4560 -5.9212 23 6 5.6224 7.1651 -1.2705 24 6 1.9089 3.6033 0.0054 25 17 0.9605 5.0575 0.0121 26 6 1.2866 2.3728 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 4.0196 0.3721 0.0004 31 1 5.1423 2.5565 0.0008 32 1 5.8499 4.2471 -0.0013 33 1 4.5543 7.3360 1.2793 34 1 5.9192 6.5843 2.1398 35 1 6.1575 8.1087 1.2524 36 1 8.0448 7.0895 0.2339 37 1 7.8680 5.3107 0.4006 38 1 7.4901 5.0088 -1.9588 39 1 8.7022 6.3263 -1.9632 40 1 9.5509 6.2215 -4.4924 41 1 5.5449 8.2257 -1.0308 42 1 4.6767 6.8070 -1.6772 43 1 0.2082 2.3137 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046707042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:26 Heat of formation + Delta-G solvation = -31.269509 kcal Electronic energy + Delta-G solvation = -27321.520808 eV Core-core repulsion = 23393.557056 eV Total energy + Delta-G solvation = -3927.963752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68672 -40.86870 -39.16095 -38.06979 -37.28422 -35.70834 -33.76791 -32.21135 -31.99194 -30.88296 -30.22847 -28.33937 -27.52062 -25.54524 -24.57304 -23.69901 -22.32071 -21.88139 -20.39265 -19.60576 -19.00083 -18.46784 -17.52369 -16.99581 -16.81824 -16.60683 -16.20162 -16.01745 -15.81104 -15.56369 -15.02883 -14.89720 -14.64597 -14.41967 -14.02162 -14.00476 -13.81208 -13.51496 -13.29886 -13.08973 -13.00327 -12.83898 -12.80808 -12.75089 -12.23248 -12.12557 -12.04620 -12.01391 -11.91322 -11.82978 -11.64832 -11.42434 -10.73449 -10.39444 -10.05851 -9.98873 -9.37860 -8.86097 -7.77248 -5.20489 -0.29592 0.03743 1.07294 1.45010 1.47852 1.54378 1.83513 2.15295 2.21111 2.49269 2.67471 3.31376 3.56824 3.59257 3.74081 3.77659 3.82209 4.05040 4.05732 4.20935 4.27239 4.36345 4.37251 4.47776 4.66300 4.69821 4.73192 4.82259 4.87847 4.93712 4.96615 4.98612 5.05743 5.06595 5.13841 5.37121 5.38026 5.43800 5.64411 5.72748 5.83029 6.18977 6.33292 6.64693 7.12947 7.33253 7.79163 8.42627 9.23572 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003161 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.771692 B = 8855.241136 C = 9265.898456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.315 6.315 3 C 0.166 3.834 4 C -0.153 4.153 5 C -0.029 4.029 6 C -0.187 4.187 7 C 0.552 3.448 8 O -0.547 6.547 9 N -0.699 5.699 10 C 0.173 3.827 11 C -0.139 4.139 12 C -0.127 4.127 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.243 4.243 16 H 0.067 0.933 17 C -0.060 4.060 18 N -0.943 5.943 19 Si 0.977 3.023 20 H -0.287 1.287 21 H -0.284 1.284 22 H -0.279 1.279 23 C 0.137 3.863 24 C 0.039 3.961 25 Cl -0.046 7.046 26 C -0.214 4.214 27 H 0.127 0.873 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.407 0.593 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.103 0.897 38 H -0.006 1.006 39 H 0.077 0.923 40 H 0.249 0.751 41 H 0.019 0.981 42 H 0.009 0.991 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 -15.034 13.843 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.227 6.227 3 C 0.119 3.881 4 C -0.172 4.172 5 C -0.047 4.047 6 C -0.191 4.191 7 C 0.340 3.660 8 O -0.426 6.426 9 N -0.352 5.352 10 C 0.087 3.913 11 C -0.197 4.197 12 C -0.166 4.166 13 C 0.030 3.970 14 N -0.349 5.349 15 C -0.372 4.372 16 H 0.085 0.915 17 C -0.253 4.253 18 N -0.592 5.592 19 Si 0.805 3.195 20 H -0.212 1.212 21 H -0.210 1.210 22 H -0.205 1.205 23 C 0.011 3.989 24 C 0.011 3.989 25 Cl -0.016 7.016 26 C -0.233 4.233 27 H 0.145 0.855 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.186 0.814 31 H 0.181 0.819 32 H 0.245 0.755 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.012 0.988 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.482 -14.352 13.668 23.970 hybrid contribution -0.177 0.534 -1.353 1.466 sum -13.660 -13.818 12.315 23.004 Atomic orbital electron populations 1.23498 0.75901 1.06280 1.02614 1.86077 1.23887 1.25446 1.87340 1.19222 0.92567 0.84128 0.92227 1.20748 0.91437 0.99415 1.05575 1.21345 1.01021 0.89608 0.92756 1.19764 0.92607 0.94291 1.12426 1.18276 0.82412 0.88952 0.76371 1.90813 1.64903 1.36866 1.50018 1.45769 1.05737 1.09029 1.74664 1.21118 0.92970 0.83053 0.94167 1.21943 1.02307 0.99899 0.95592 1.23247 0.92322 1.03543 0.97459 1.21814 0.95418 0.90733 0.88986 1.44788 1.22712 1.54238 1.13207 1.19315 1.04908 1.22217 0.90729 0.91511 1.25516 0.96925 1.00675 1.02145 1.69993 1.11901 1.40717 1.36605 0.85185 0.76720 0.78087 0.79524 1.21233 1.21030 1.20472 1.21658 0.90762 0.96531 0.89931 1.20891 0.90853 0.88731 0.98440 1.98414 1.71012 1.36194 1.96026 1.21212 1.01988 0.89561 1.10541 0.85492 0.91221 0.91672 0.81409 0.81900 0.75540 0.92518 0.90336 0.91352 0.89807 0.87881 0.98815 0.90551 0.94150 0.96323 0.97333 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.87 10.48 -90.24 -0.95 -5.82 16 3 C 0.17 3.05 6.69 22.63 0.15 3.20 16 4 C -0.15 -2.67 9.97 22.33 0.22 -2.45 16 5 C -0.03 -0.58 9.53 22.50 0.21 -0.37 16 6 C -0.19 -5.12 5.88 -20.06 -0.12 -5.24 16 7 C 0.55 18.45 6.98 86.69 0.61 19.05 16 8 O -0.55 -21.64 10.90 -4.00 -0.04 -21.68 16 9 N -0.70 -21.64 5.10 -420.69 -2.14 -23.78 16 10 C 0.17 6.08 0.81 4.79 0.00 6.09 16 11 C -0.14 -4.20 8.40 71.98 0.60 -3.60 16 12 C -0.13 -4.36 6.11 32.06 0.20 -4.17 16 13 C 0.16 7.40 5.89 86.93 0.51 7.91 16 14 N -0.62 -33.47 3.39 -691.55 -2.35 -35.81 16 15 C -0.24 -14.32 10.27 84.03 0.86 -13.46 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 18 N -0.94 -55.71 10.08 21.65 0.22 -55.50 16 19 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 C 0.14 6.40 6.12 86.73 0.53 6.93 16 24 C 0.04 1.04 6.35 22.58 0.14 1.18 16 25 Cl -0.05 -1.36 26.01 -2.72 -0.07 -1.43 16 26 C -0.21 -4.30 8.80 22.35 0.20 -4.11 16 27 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.46 7.65 -2.39 -0.02 0.44 16 29 H 0.06 0.50 7.65 -2.39 -0.02 0.48 16 30 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.16 2.51 6.39 -2.91 -0.02 2.49 16 32 H 0.41 10.15 6.50 -92.71 -0.60 9.54 16 33 H 0.06 1.92 6.43 -2.39 -0.02 1.91 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 36 H 0.08 2.81 8.04 -2.39 -0.02 2.79 16 37 H 0.10 2.72 8.05 -2.39 -0.02 2.70 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16 39 H 0.08 4.16 5.86 -2.39 -0.01 4.15 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.02 0.90 7.82 -2.39 -0.02 0.88 16 42 H 0.01 0.45 6.49 -2.39 -0.02 0.43 16 43 H 0.16 2.47 6.27 -2.91 -0.02 2.45 16 Total: -1.00 -74.90 357.83 2.85 -72.05 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.45 Total: 13.90 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.70 Total: 9.19 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.27 Total: -115.09 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.99 Total: -27.49 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal Total: -74.90 2.85 -72.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046707042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.784 kcal (2) G-P(sol) polarization free energy of solvation -74.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds