Wall clock time and date at job start Tue Mar 31 2020 20:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35917 * 117.00153 * 2 1 4 4 C 1.38824 * 119.97447 * 359.97438 * 3 2 1 5 5 C 1.38352 * 120.22557 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.91289 * 180.02562 * 5 4 3 7 7 C 1.38137 * 120.18185 * 359.72650 * 5 4 3 8 8 C 1.39549 * 119.94699 * 0.57668 * 7 5 4 9 9 C 1.47858 * 120.11385 * 179.70072 * 8 7 5 10 10 O 1.21555 * 120.00219 * 179.72419 * 9 8 7 11 11 N 1.34775 * 119.99880 * 359.72020 * 9 8 7 12 12 C 1.46497 * 119.99869 * 179.97438 * 11 9 8 13 13 C 1.53002 * 110.91586 * 56.10345 * 12 11 9 14 14 C 1.55159 * 111.00234 * 179.97438 * 12 11 9 15 15 C 1.54325 * 102.94381 * 82.57599 * 14 12 11 16 16 N 1.47026 * 107.26644 * 22.19183 * 15 14 12 17 17 C 1.36935 * 125.64477 * 181.02318 * 16 15 14 18 18 H 1.08005 * 119.99877 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00369 * 359.75402 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.47420 * 108.70732 * 1.28881 * 16 15 14 26 26 C 1.38458 * 119.97772 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46556 * 300.00277 * 1 2 3 29 29 H 1.09002 * 109.47208 * 59.99518 * 1 2 3 30 30 H 1.07996 * 119.88950 * 359.97438 * 4 3 2 31 31 H 1.07991 * 120.03010 * 180.29199 * 7 5 4 32 32 H 0.97003 * 119.99919 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47151 * 183.89791 * 13 12 11 34 34 H 1.09001 * 109.46787 * 303.90001 * 13 12 11 35 35 H 1.09000 * 109.47168 * 63.90199 * 13 12 11 36 36 H 1.08995 * 110.72318 * 324.21098 * 14 12 11 37 37 H 1.09004 * 110.87132 * 201.00961 * 14 12 11 38 38 H 1.08999 * 109.88324 * 262.77933 * 15 14 12 39 39 H 1.09001 * 109.88412 * 141.60830 * 15 14 12 40 40 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36863 * 94.48168 * 25 16 15 42 42 H 1.08994 * 110.36906 * 216.80715 * 25 16 15 43 43 H 1.07997 * 120.09095 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9122 3.6104 0.0000 6 17 0.9582 5.0608 0.0000 7 6 3.2911 3.6931 0.0068 8 6 4.0589 2.5278 0.0009 9 6 5.5351 2.6121 0.0014 10 8 6.2019 1.5958 0.0014 11 7 6.1413 3.8158 0.0019 12 6 7.6039 3.8993 0.0030 13 6 8.1955 3.1346 -1.1829 14 6 8.0766 5.3771 0.0027 15 6 7.9956 5.7662 1.4939 16 7 8.0515 4.5210 2.2735 17 6 7.9878 4.4304 3.6384 18 1 8.0380 3.4642 4.1184 19 6 7.8642 5.5808 4.4053 20 7 7.8089 6.7587 3.8206 21 14 7.7780 5.4574 6.2672 22 1 7.8611 4.0314 6.6731 23 1 8.9095 6.2097 6.8662 24 1 6.4942 6.0329 6.7425 25 6 8.1940 3.3865 1.3429 26 6 3.4288 1.2829 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2111 2.3159 -0.0014 31 1 3.7746 4.6587 0.0119 32 1 5.6092 4.6268 0.0022 33 1 9.2836 3.1535 -1.1210 34 1 7.8481 2.1017 -1.1589 35 1 7.8764 3.6039 -2.1135 36 1 7.4069 5.9961 -0.5943 37 1 9.1008 5.4572 -0.3617 38 1 7.0577 6.2853 1.6912 39 1 8.8382 6.4061 1.7563 40 1 7.7229 7.5627 4.3565 41 1 9.2452 3.1249 1.2218 42 1 7.6274 2.5275 1.7023 43 1 4.0180 0.3779 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046719751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:36 Heat of formation + Delta-G solvation = -20.673532 kcal Electronic energy + Delta-G solvation = -27293.318384 eV Core-core repulsion = 23365.814108 eV Total energy + Delta-G solvation = -3927.504276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69648 -39.71870 -37.93711 -37.19957 -36.31359 -33.99948 -32.23098 -31.18812 -30.59898 -29.63571 -28.65455 -27.64317 -25.66303 -24.32972 -23.42291 -22.75825 -20.90146 -20.17838 -19.14064 -18.71255 -17.02016 -16.85544 -16.31846 -16.13895 -16.09890 -15.50497 -14.94598 -14.74265 -14.60878 -14.10243 -14.01066 -13.75495 -13.46361 -13.24452 -12.85624 -12.58460 -12.31161 -12.17690 -12.03359 -11.88795 -11.81918 -11.66217 -11.47785 -11.25690 -11.01803 -10.87906 -10.87150 -10.41071 -10.36353 -10.05707 -10.00659 -9.65273 -9.39446 -9.15763 -8.68492 -8.56097 -8.52194 -6.78794 -5.69386 -3.01208 0.55619 0.98130 1.81818 2.80361 2.83192 3.41266 3.43406 3.47876 3.50007 3.70790 4.43582 4.52674 4.56609 4.76056 4.79173 4.81389 4.96913 5.02131 5.13116 5.18991 5.30426 5.39439 5.48514 5.62610 5.73283 5.79067 5.84232 6.00912 6.03878 6.12930 6.15436 6.19845 6.36260 6.40706 6.53694 6.68857 6.80187 6.98375 7.09147 7.55721 7.57142 7.80133 7.84223 8.27352 8.45936 9.25145 9.85132 10.50804 11.42700 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.003563 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.755911 B = 7857.710518 C = 8610.565695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.132 3.868 4 C -0.184 4.184 5 C -0.002 4.002 6 Cl -0.060 7.060 7 C -0.112 4.112 8 C -0.072 4.072 9 C 0.562 3.438 10 O -0.530 6.530 11 N -0.691 5.691 12 C 0.156 3.844 13 C -0.153 4.153 14 C -0.147 4.147 15 C 0.177 3.823 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.924 5.924 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.133 3.867 26 C -0.088 4.088 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.399 0.601 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.250 0.750 41 H 0.028 0.972 42 H 0.050 0.950 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.482 -7.114 -12.962 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.086 3.914 4 C -0.203 4.203 5 C -0.029 4.029 6 Cl -0.031 7.031 7 C -0.132 4.132 8 C -0.076 4.076 9 C 0.348 3.652 10 O -0.408 6.408 11 N -0.341 5.341 12 C 0.070 3.930 13 C -0.212 4.212 14 C -0.186 4.186 15 C 0.052 3.948 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.006 3.994 26 C -0.108 4.108 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.997 -7.741 -12.764 20.463 hybrid contribution -0.775 0.878 1.144 1.637 sum -14.772 -6.863 -11.620 20.008 Atomic orbital electron populations 1.23132 0.78049 1.04330 1.01571 1.86136 1.21611 1.25866 1.88603 1.18641 0.91807 0.84048 0.96855 1.21195 1.00837 0.90589 1.07704 1.20440 0.91546 0.87588 1.03278 1.98390 1.71799 1.36161 1.96799 1.21168 0.91656 0.99091 1.01249 1.19771 0.93846 0.92546 1.01422 1.17872 0.86304 0.84057 0.76983 1.90725 1.65321 1.34924 1.49800 1.45727 1.07528 1.07564 1.73274 1.21570 0.78293 0.96784 0.96385 1.22046 1.00717 1.02213 0.96216 1.23241 1.00830 0.93443 1.01082 1.21166 1.01141 0.88670 0.83834 1.44453 1.86314 1.00525 1.01651 1.19110 1.42565 0.93163 0.80128 0.90527 1.24751 1.02472 0.95307 0.97947 1.69953 1.57303 0.96748 1.33198 0.86071 0.77198 0.77283 0.85429 1.20543 1.21802 1.21848 1.21919 0.97019 0.92174 0.88265 1.20570 0.91164 0.98654 1.00414 0.87879 0.92355 0.92432 0.84097 0.84129 0.76570 0.91777 0.90252 0.93151 0.91735 0.90707 0.93659 0.93727 0.93932 0.95479 0.93151 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.27 10.49 -19.48 -0.20 -3.47 16 3 C 0.13 1.55 6.68 -39.28 -0.26 1.28 16 4 C -0.18 -1.93 8.81 -39.32 -0.35 -2.28 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.27 16 6 Cl -0.06 -0.65 28.95 -51.86 -1.50 -2.15 16 7 C -0.11 -1.42 9.32 -39.13 -0.36 -1.79 16 8 C -0.07 -1.03 5.87 -104.99 -0.62 -1.65 16 9 C 0.56 9.40 7.16 -12.32 -0.09 9.31 16 10 O -0.53 -10.11 13.18 5.32 0.07 -10.04 16 11 N -0.69 -11.29 5.14 -46.44 -0.24 -11.53 16 12 C 0.16 2.74 0.82 -129.55 -0.11 2.63 16 13 C -0.15 -2.33 8.59 37.16 0.32 -2.01 16 14 C -0.15 -2.57 5.96 -24.89 -0.15 -2.72 16 15 C 0.18 4.12 5.36 -3.06 -0.02 4.10 16 16 N -0.60 -15.34 3.39 -169.93 -0.58 -15.92 16 17 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 18 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.82 10.31 55.49 0.57 -26.25 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.13 2.90 6.18 -2.41 -0.01 2.88 16 26 C -0.09 -1.19 9.53 -39.02 -0.37 -1.56 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 29 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.14 1.13 6.28 -52.49 -0.33 0.80 16 31 H 0.14 1.66 6.40 -52.49 -0.34 1.32 16 32 H 0.40 5.86 6.54 -40.82 -0.27 5.60 16 33 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.08 1.31 5.91 -51.93 -0.31 1.01 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 38 H 0.05 1.15 7.40 -51.93 -0.38 0.77 16 39 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.59 7.99 -51.93 -0.41 0.18 16 42 H 0.05 1.18 6.89 -51.93 -0.36 0.82 16 43 H 0.15 2.07 7.65 -52.49 -0.40 1.67 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -32.22 362.99 -8.59 -40.81 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.63 Total: 3.36 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.53 Total: 2.32 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.24 Total: -53.70 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.13 Total: -13.51 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.22 -8.59 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046719751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.133 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds