Wall clock time and date at job start Tue Mar 31 2020 20:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35917 * 117.00153 * 2 1 4 4 C 1.38824 * 119.97447 * 359.97438 * 3 2 1 5 5 C 1.38352 * 120.22557 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.91289 * 180.02562 * 5 4 3 7 7 C 1.38137 * 120.18185 * 359.72650 * 5 4 3 8 8 C 1.39549 * 119.94699 * 0.57668 * 7 5 4 9 9 C 1.47858 * 120.11385 * 179.70072 * 8 7 5 10 10 O 1.21555 * 120.00219 * 179.72419 * 9 8 7 11 11 N 1.34775 * 119.99880 * 359.72020 * 9 8 7 12 12 C 1.46497 * 119.99869 * 179.97438 * 11 9 8 13 13 C 1.53002 * 110.91586 * 56.10345 * 12 11 9 14 14 C 1.55159 * 111.00234 * 179.97438 * 12 11 9 15 15 C 1.54325 * 102.94381 * 82.57599 * 14 12 11 16 16 N 1.47026 * 107.26644 * 22.19183 * 15 14 12 17 17 C 1.36935 * 125.64477 * 181.02318 * 16 15 14 18 18 H 1.08005 * 119.99877 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00369 * 359.75402 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.47420 * 108.70732 * 1.28881 * 16 15 14 26 26 C 1.38458 * 119.97772 * 180.02562 * 3 2 1 27 27 H 1.08993 * 109.46899 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46556 * 300.00277 * 1 2 3 29 29 H 1.09002 * 109.47208 * 59.99518 * 1 2 3 30 30 H 1.07996 * 119.88950 * 359.97438 * 4 3 2 31 31 H 1.07991 * 120.03010 * 180.29199 * 7 5 4 32 32 H 0.97003 * 119.99919 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47151 * 183.89791 * 13 12 11 34 34 H 1.09001 * 109.46787 * 303.90001 * 13 12 11 35 35 H 1.09000 * 109.47168 * 63.90199 * 13 12 11 36 36 H 1.08995 * 110.72318 * 324.21098 * 14 12 11 37 37 H 1.09004 * 110.87132 * 201.00961 * 14 12 11 38 38 H 1.08999 * 109.88324 * 262.77933 * 15 14 12 39 39 H 1.09001 * 109.88412 * 141.60830 * 15 14 12 40 40 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36863 * 94.48168 * 25 16 15 42 42 H 1.08994 * 110.36906 * 216.80715 * 25 16 15 43 43 H 1.07997 * 120.09095 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2895 2.3750 -0.0005 5 6 1.9122 3.6104 0.0000 6 17 0.9582 5.0608 0.0000 7 6 3.2911 3.6931 0.0068 8 6 4.0589 2.5278 0.0009 9 6 5.5351 2.6121 0.0014 10 8 6.2019 1.5958 0.0014 11 7 6.1413 3.8158 0.0019 12 6 7.6039 3.8993 0.0030 13 6 8.1955 3.1346 -1.1829 14 6 8.0766 5.3771 0.0027 15 6 7.9956 5.7662 1.4939 16 7 8.0515 4.5210 2.2735 17 6 7.9878 4.4304 3.6384 18 1 8.0380 3.4642 4.1184 19 6 7.8642 5.5808 4.4053 20 7 7.8089 6.7587 3.8206 21 14 7.7780 5.4574 6.2672 22 1 7.8611 4.0314 6.6731 23 1 8.9095 6.2097 6.8662 24 1 6.4942 6.0329 6.7425 25 6 8.1940 3.3865 1.3429 26 6 3.4288 1.2829 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2111 2.3159 -0.0014 31 1 3.7746 4.6587 0.0119 32 1 5.6092 4.6268 0.0022 33 1 9.2836 3.1535 -1.1210 34 1 7.8481 2.1017 -1.1589 35 1 7.8764 3.6039 -2.1135 36 1 7.4069 5.9961 -0.5943 37 1 9.1008 5.4572 -0.3617 38 1 7.0577 6.2853 1.6912 39 1 8.8382 6.4061 1.7563 40 1 7.7229 7.5627 4.3565 41 1 9.2452 3.1249 1.2218 42 1 7.6274 2.5275 1.7023 43 1 4.0180 0.3779 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046719751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:36 Heat of formation + Delta-G solvation = -41.042656 kcal Electronic energy + Delta-G solvation = -27294.201656 eV Core-core repulsion = 23365.814108 eV Total energy + Delta-G solvation = -3928.387548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76992 -40.87069 -39.14038 -38.41039 -37.27690 -35.71450 -33.84260 -32.39795 -31.83218 -30.97130 -30.25944 -28.26209 -27.50683 -25.68953 -24.91063 -23.69299 -22.32711 -21.77464 -20.52775 -19.81304 -18.83655 -17.87091 -17.37118 -17.26456 -16.87693 -16.81062 -16.61124 -16.09194 -15.97659 -15.57830 -15.37857 -14.92525 -14.80348 -14.37663 -14.18489 -13.88051 -13.56594 -13.45335 -13.35358 -13.17870 -13.01949 -12.88274 -12.82842 -12.74166 -12.29662 -12.13825 -12.08051 -12.02883 -11.95696 -11.84746 -11.70103 -11.58331 -10.77821 -10.70596 -10.18290 -9.97572 -9.45270 -8.85641 -7.85411 -5.18822 -0.44837 0.03474 0.91145 1.43966 1.44235 1.54637 1.67818 1.93768 2.35435 2.48303 2.60005 3.32913 3.40915 3.61692 3.72353 3.73899 3.84221 3.99398 4.04349 4.10162 4.19776 4.26918 4.38991 4.39636 4.64495 4.70907 4.73874 4.76205 4.86783 4.88219 4.93309 4.93787 5.01925 5.04827 5.09851 5.24507 5.39686 5.43964 5.62239 5.69049 5.77997 6.20540 6.21203 6.53582 7.12406 7.17044 7.77894 8.41983 9.24462 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.003563 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.755911 B = 7857.710518 C = 8610.565695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.136 3.864 4 C -0.170 4.170 5 C -0.005 4.005 6 Cl -0.050 7.050 7 C -0.116 4.116 8 C -0.087 4.087 9 C 0.560 3.440 10 O -0.560 6.560 11 N -0.690 5.690 12 C 0.166 3.834 13 C -0.144 4.144 14 C -0.129 4.129 15 C 0.184 3.816 16 N -0.621 5.621 17 C -0.241 4.241 18 H 0.068 0.932 19 C -0.057 4.057 20 N -0.944 5.944 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.130 3.870 26 C -0.103 4.103 27 H 0.123 0.877 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.146 0.854 32 H 0.407 0.593 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.019 0.981 39 H 0.010 0.990 40 H 0.247 0.753 41 H 0.029 0.971 42 H 0.026 0.974 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 -7.094 -14.055 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.238 6.238 3 C 0.090 3.910 4 C -0.189 4.189 5 C -0.032 4.032 6 Cl -0.021 7.021 7 C -0.135 4.135 8 C -0.091 4.091 9 C 0.347 3.653 10 O -0.440 6.440 11 N -0.340 5.340 12 C 0.079 3.921 13 C -0.202 4.202 14 C -0.167 4.167 15 C 0.060 3.940 16 N -0.347 5.347 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.250 4.250 20 N -0.593 5.593 21 Si 0.800 3.200 22 H -0.199 1.199 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.004 3.996 26 C -0.122 4.122 27 H 0.141 0.859 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.188 0.812 31 H 0.164 0.836 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.037 0.963 39 H 0.028 0.972 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.814 -7.728 -13.880 22.416 hybrid contribution -0.309 0.803 1.507 1.735 sum -16.123 -6.925 -12.373 21.471 Atomic orbital electron populations 1.23501 0.75659 1.06239 1.02800 1.86134 1.24075 1.25287 1.88280 1.18597 0.91234 0.85013 0.96179 1.21469 1.02222 0.89572 1.05623 1.20513 0.91272 0.88432 1.02962 1.98396 1.71308 1.35620 1.96726 1.21209 0.92301 0.98710 1.01295 1.19538 0.92392 0.93540 1.03603 1.18257 0.87408 0.83590 0.76039 1.90703 1.66289 1.35835 1.51177 1.45709 1.07161 1.08002 1.73154 1.21451 0.79014 0.96743 0.94879 1.21972 1.01263 1.01037 0.95966 1.23118 1.02987 0.93542 0.97080 1.20960 0.98227 0.87427 0.87424 1.44689 1.86126 1.02393 1.01480 1.19350 1.42656 0.93014 0.81999 0.91377 1.25479 1.02557 0.95047 1.01949 1.70142 1.57816 0.97005 1.34304 0.85120 0.76941 0.77403 0.80547 1.19867 1.21603 1.21655 1.22031 0.97023 0.90572 0.90005 1.20560 0.92299 0.97999 1.01378 0.85861 0.91356 0.90835 0.81166 0.83588 0.75625 0.90612 0.91762 0.90504 0.88423 0.88767 0.96319 0.97185 0.94332 0.95348 0.95566 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -6.34 10.49 -92.62 -0.97 -7.31 16 3 C 0.14 3.01 6.68 22.46 0.15 3.16 16 4 C -0.17 -3.18 8.81 22.44 0.20 -2.98 16 5 C 0.00 -0.10 6.31 22.27 0.14 0.04 16 6 Cl -0.05 -0.96 28.95 -2.72 -0.08 -1.04 16 7 C -0.12 -2.84 9.32 22.56 0.21 -2.63 16 8 C -0.09 -2.50 5.87 -20.10 -0.12 -2.62 16 9 C 0.56 18.98 7.16 86.79 0.62 19.60 16 10 O -0.56 -22.01 13.18 -3.89 -0.05 -22.06 16 11 N -0.69 -22.28 5.14 -419.11 -2.15 -24.44 16 12 C 0.17 5.68 0.82 5.07 0.00 5.69 16 13 C -0.14 -4.12 8.59 71.98 0.62 -3.50 16 14 C -0.13 -4.29 5.96 31.78 0.19 -4.10 16 15 C 0.18 8.72 5.36 86.73 0.46 9.19 16 16 N -0.62 -32.37 3.39 -691.55 -2.35 -34.72 16 17 C -0.24 -13.98 10.28 84.03 0.86 -13.12 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 19 C -0.06 -3.27 5.49 84.86 0.47 -2.80 16 20 N -0.94 -55.95 10.31 21.65 0.22 -55.73 16 21 Si 0.97 46.75 29.55 68.60 2.03 48.77 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 C 0.13 5.76 6.18 86.93 0.54 6.30 16 26 C -0.10 -2.78 9.53 22.63 0.22 -2.57 16 27 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 30 H 0.17 2.11 6.28 -2.91 -0.02 2.10 16 31 H 0.15 3.32 6.40 -2.92 -0.02 3.30 16 32 H 0.41 11.67 6.54 -92.71 -0.61 11.06 16 33 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.06 2.08 5.91 -2.39 -0.01 2.07 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 2.65 8.09 -2.39 -0.02 2.63 16 37 H 0.09 2.82 8.04 -2.38 -0.02 2.80 16 38 H 0.02 0.97 7.40 -2.39 -0.02 0.95 16 39 H 0.01 0.53 7.49 -2.39 -0.02 0.52 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.03 1.25 7.99 -2.39 -0.02 1.24 16 42 H 0.03 1.27 6.89 -2.39 -0.02 1.26 16 43 H 0.14 4.01 7.65 -2.91 -0.02 3.99 16 Total: -1.00 -71.88 362.99 2.77 -69.11 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.44 Total: 16.54 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 5.67 Total: 10.87 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.28 Total: -114.88 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.02 Total: -29.37 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -71.88 2.77 -69.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046719751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.068 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds