Wall clock time and date at job start Tue Mar 31 2020 20:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35914 * 116.99494 * 2 1 4 4 C 1.38825 * 119.98240 * 359.97438 * 3 2 1 5 5 C 1.38351 * 120.23274 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.91602 * 179.97438 * 5 4 3 7 7 C 1.38136 * 120.17487 * 359.97438 * 5 4 3 8 8 C 1.39545 * 119.95368 * 0.02562 * 7 5 4 9 9 C 1.47865 * 120.11410 * 180.02562 * 8 7 5 10 10 O 1.21549 * 119.99844 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99611 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99427 * 180.02562 * 11 9 8 13 13 C 1.52997 * 110.64182 * 300.69873 * 12 11 9 14 14 C 1.55163 * 110.86719 * 177.45118 * 12 11 9 15 15 C 1.54904 * 101.58073 * 277.06821 * 14 12 11 16 16 N 1.47421 * 104.83620 * 322.98869 * 15 14 12 17 17 C 1.36936 * 125.65035 * 204.09628 * 16 15 14 18 18 H 1.08003 * 119.99872 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99824 * 0.04033 * 17 16 15 20 20 N 1.31611 * 120.00200 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99647 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47479 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47174 * 120.00294 * 21 19 17 24 24 H 1.48501 * 109.47230 * 240.00266 * 21 19 17 25 25 C 1.47025 * 108.70178 * 24.13268 * 16 15 14 26 26 C 1.38466 * 119.97470 * 180.28369 * 3 2 1 27 27 H 1.08997 * 109.47469 * 60.00347 * 1 2 3 28 28 H 1.09004 * 109.46554 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46916 * 299.99951 * 1 2 3 30 30 H 1.08010 * 119.88504 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.02177 * 180.02562 * 7 5 4 32 32 H 0.96991 * 120.00318 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47153 * 181.69032 * 13 12 11 34 34 H 1.09001 * 109.46832 * 61.69223 * 13 12 11 35 35 H 1.09004 * 109.47261 * 301.69204 * 13 12 11 36 36 H 1.08995 * 111.00334 * 35.14471 * 14 12 11 37 37 H 1.08999 * 111.00142 * 158.99183 * 14 12 11 38 38 H 1.09007 * 110.36208 * 204.15318 * 15 14 12 39 39 H 1.08998 * 110.36944 * 81.83660 * 15 14 12 40 40 H 0.97004 * 119.99847 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.88484 * 239.52534 * 25 16 15 42 42 H 1.08998 * 110.01061 * 118.42466 * 25 16 15 43 43 H 1.08004 * 120.09081 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9120 3.6105 -0.0011 6 17 0.9579 5.0608 -0.0024 7 6 3.2909 3.6932 -0.0005 8 6 4.0587 2.5280 0.0000 9 6 5.5350 2.6123 0.0011 10 8 6.2017 1.5960 0.0011 11 7 6.1411 3.8161 0.0011 12 6 7.6038 3.8996 0.0017 13 6 8.1834 3.2009 1.2332 14 6 8.0730 5.3772 -0.0629 15 6 7.9935 5.6625 -1.5833 16 7 8.4226 4.4071 -2.2260 17 6 8.9532 4.2949 -3.4834 18 1 9.2372 3.3253 -3.8651 19 6 9.1264 5.4274 -4.2671 20 7 8.7811 6.6090 -3.8016 21 14 9.8496 5.2742 -5.9826 22 1 10.1519 3.8484 -6.2670 23 1 8.8719 5.7807 -6.9791 24 1 11.0995 6.0718 -6.0660 25 6 8.1857 3.2953 -1.2936 26 6 3.4287 1.2830 -0.0059 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2109 2.3159 -0.0005 31 1 3.7743 4.6589 -0.0005 32 1 5.6090 4.6270 0.0008 33 1 9.2689 3.3003 1.2301 34 1 7.9152 2.1446 1.2114 35 1 7.7791 3.6599 2.1354 36 1 7.3964 6.0266 0.4925 37 1 9.0955 5.4786 0.3007 38 1 8.6674 6.4760 -1.8523 39 1 6.9706 5.9056 -1.8708 40 1 8.9025 7.4004 -4.3492 41 1 9.1252 2.7873 -1.0760 42 1 7.4750 2.5910 -1.7259 43 1 4.0181 0.3780 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046719752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:41 Heat of formation + Delta-G solvation = -19.309305 kcal Electronic energy + Delta-G solvation = -27090.962788 eV Core-core repulsion = 23163.517669 eV Total energy + Delta-G solvation = -3927.445119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76010 -39.78359 -37.98526 -37.23626 -36.37110 -34.09027 -32.24772 -31.23384 -30.63758 -29.63447 -28.66067 -27.69004 -25.68424 -24.38011 -23.39977 -22.81688 -20.88978 -20.32621 -19.10588 -18.77265 -17.04756 -16.91059 -16.38832 -16.18202 -16.14553 -15.58752 -14.99176 -14.78382 -14.65878 -14.13136 -14.04277 -13.72406 -13.49988 -13.16020 -12.79223 -12.64171 -12.37674 -12.27706 -12.18817 -11.99694 -11.73740 -11.56788 -11.52077 -11.32075 -11.07350 -10.92126 -10.85959 -10.43622 -10.34800 -10.04677 -9.99900 -9.67222 -9.38963 -9.22141 -8.69904 -8.63096 -8.60507 -6.79808 -5.63767 -3.04011 0.49395 0.91560 1.75177 2.74599 2.77960 3.36707 3.41769 3.47718 3.50145 3.63978 4.37560 4.51152 4.51811 4.69046 4.74524 4.77493 4.91366 4.98291 5.09221 5.17594 5.26437 5.39132 5.50254 5.56837 5.72744 5.73694 5.78622 5.95474 6.02838 6.11031 6.17629 6.22362 6.34629 6.44868 6.51110 6.69136 6.83189 6.93323 7.10729 7.45640 7.65091 7.73883 7.84933 8.35552 8.40729 9.24788 9.85460 10.50001 11.40673 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003027 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.693593 B = 9247.276578 C = 9590.268362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.133 3.867 4 C -0.183 4.183 5 C -0.002 4.002 6 Cl -0.060 7.060 7 C -0.114 4.114 8 C -0.073 4.073 9 C 0.560 3.440 10 O -0.525 6.525 11 N -0.699 5.699 12 C 0.159 3.841 13 C -0.150 4.150 14 C -0.147 4.147 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.216 4.216 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.924 5.924 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.137 3.863 26 C -0.088 4.088 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.010 0.990 40 H 0.250 0.750 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 -6.341 12.589 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.087 3.913 4 C -0.203 4.203 5 C -0.029 4.029 6 Cl -0.031 7.031 7 C -0.134 4.134 8 C -0.077 4.077 9 C 0.346 3.654 10 O -0.403 6.403 11 N -0.349 5.349 12 C 0.073 3.927 13 C -0.209 4.209 14 C -0.186 4.186 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.345 4.345 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.574 5.574 21 Si 0.744 3.256 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.010 3.990 26 C -0.108 4.108 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.930 -7.004 12.395 22.121 hybrid contribution -0.492 0.714 -1.003 1.326 sum -17.422 -6.290 11.392 21.746 Atomic orbital electron populations 1.23141 0.77994 1.04389 1.01577 1.86143 1.21655 1.25822 1.88547 1.18650 0.91803 0.84083 0.96724 1.21207 1.00879 0.90580 1.07642 1.20439 0.91531 0.87613 1.03274 1.98391 1.71795 1.36128 1.96799 1.21156 0.91659 0.99032 1.01524 1.19777 0.93813 0.92577 1.01497 1.17900 0.86321 0.84108 0.77061 1.90756 1.65358 1.34852 1.49309 1.45917 1.07725 1.07546 1.73746 1.21410 0.77839 0.97492 0.95965 1.22054 1.00772 1.02150 0.95913 1.23370 1.00906 0.92626 1.01650 1.21945 0.98841 0.91694 0.84799 1.44508 1.73386 1.01502 1.13603 1.19142 1.32638 0.93685 0.89003 0.90477 1.24754 1.01901 0.95360 0.98793 1.69779 1.53995 0.97518 1.36069 0.86001 0.78343 0.77287 0.83930 1.20530 1.21836 1.21774 1.21600 0.97216 0.91536 0.88613 1.20589 0.91194 0.98687 1.00315 0.92334 0.87835 0.92412 0.84051 0.84155 0.76706 0.91631 0.90763 0.93081 0.91857 0.90348 0.87372 0.97173 0.93872 0.95048 0.94920 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.12 10.49 -19.47 -0.20 -3.33 16 3 C 0.13 1.48 6.68 -39.28 -0.26 1.22 16 4 C -0.18 -1.81 8.81 -39.32 -0.35 -2.16 16 5 C 0.00 -0.02 6.31 -39.58 -0.25 -0.27 16 6 Cl -0.06 -0.60 28.95 -51.86 -1.50 -2.10 16 7 C -0.11 -1.35 9.32 -39.13 -0.36 -1.71 16 8 C -0.07 -0.99 5.87 -104.99 -0.62 -1.61 16 9 C 0.56 9.12 6.99 -12.32 -0.09 9.04 16 10 O -0.53 -9.98 13.32 5.32 0.07 -9.90 16 11 N -0.70 -11.04 5.10 -46.83 -0.24 -11.28 16 12 C 0.16 2.81 0.81 -129.98 -0.11 2.70 16 13 C -0.15 -2.34 8.36 37.16 0.31 -2.03 16 14 C -0.15 -2.62 6.09 -24.58 -0.15 -2.77 16 15 C 0.15 3.57 5.87 -2.53 -0.01 3.56 16 16 N -0.60 -15.61 3.39 -170.07 -0.58 -16.19 16 17 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 18 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.37 5.49 -17.44 -0.10 -0.47 16 20 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.14 3.05 6.16 -3.06 -0.02 3.03 16 26 C -0.09 -1.14 9.53 -39.02 -0.37 -1.51 16 27 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.14 1.05 6.28 -52.48 -0.33 0.72 16 31 H 0.14 1.48 6.40 -52.49 -0.34 1.15 16 32 H 0.40 5.42 6.52 -40.82 -0.27 5.15 16 33 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 34 H 0.07 1.24 6.27 -51.93 -0.33 0.92 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 37 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 38 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 42 H 0.03 0.79 6.68 -51.93 -0.35 0.44 16 43 H 0.15 2.02 7.65 -52.48 -0.40 1.62 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -32.35 362.17 -8.57 -40.92 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.58 Total: 3.41 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.53 Total: 1.86 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.26 Total: -53.67 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.13 Total: -13.23 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.35 -8.57 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046719752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.615 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds