Wall clock time and date at job start Tue Mar 31 2020 20:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35914 * 116.99494 * 2 1 4 4 C 1.38825 * 119.98240 * 359.97438 * 3 2 1 5 5 C 1.38351 * 120.23274 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.91602 * 179.97438 * 5 4 3 7 7 C 1.38136 * 120.17487 * 359.97438 * 5 4 3 8 8 C 1.39545 * 119.95368 * 0.02562 * 7 5 4 9 9 C 1.47865 * 120.11410 * 180.02562 * 8 7 5 10 10 O 1.21549 * 119.99844 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99611 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99427 * 180.02562 * 11 9 8 13 13 C 1.52997 * 110.64182 * 300.69873 * 12 11 9 14 14 C 1.55163 * 110.86719 * 177.45118 * 12 11 9 15 15 C 1.54904 * 101.58073 * 277.06821 * 14 12 11 16 16 N 1.47421 * 104.83620 * 322.98869 * 15 14 12 17 17 C 1.36936 * 125.65035 * 204.09628 * 16 15 14 18 18 H 1.08003 * 119.99872 * 180.02562 * 17 16 15 19 19 C 1.38807 * 119.99824 * 0.04033 * 17 16 15 20 20 N 1.31611 * 120.00200 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99647 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47479 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47174 * 120.00294 * 21 19 17 24 24 H 1.48501 * 109.47230 * 240.00266 * 21 19 17 25 25 C 1.47025 * 108.70178 * 24.13268 * 16 15 14 26 26 C 1.38466 * 119.97470 * 180.28369 * 3 2 1 27 27 H 1.08997 * 109.47469 * 60.00347 * 1 2 3 28 28 H 1.09004 * 109.46554 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46916 * 299.99951 * 1 2 3 30 30 H 1.08010 * 119.88504 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.02177 * 180.02562 * 7 5 4 32 32 H 0.96991 * 120.00318 * 0.02562 * 11 9 8 33 33 H 1.09002 * 109.47153 * 181.69032 * 13 12 11 34 34 H 1.09001 * 109.46832 * 61.69223 * 13 12 11 35 35 H 1.09004 * 109.47261 * 301.69204 * 13 12 11 36 36 H 1.08995 * 111.00334 * 35.14471 * 14 12 11 37 37 H 1.08999 * 111.00142 * 158.99183 * 14 12 11 38 38 H 1.09007 * 110.36208 * 204.15318 * 15 14 12 39 39 H 1.08998 * 110.36944 * 81.83660 * 15 14 12 40 40 H 0.97004 * 119.99847 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.88484 * 239.52534 * 25 16 15 42 42 H 1.08998 * 110.01061 * 118.42466 * 25 16 15 43 43 H 1.08004 * 120.09081 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3750 -0.0005 5 6 1.9120 3.6105 -0.0011 6 17 0.9579 5.0608 -0.0024 7 6 3.2909 3.6932 -0.0005 8 6 4.0587 2.5280 0.0000 9 6 5.5350 2.6123 0.0011 10 8 6.2017 1.5960 0.0011 11 7 6.1411 3.8161 0.0011 12 6 7.6038 3.8996 0.0017 13 6 8.1834 3.2009 1.2332 14 6 8.0730 5.3772 -0.0629 15 6 7.9935 5.6625 -1.5833 16 7 8.4226 4.4071 -2.2260 17 6 8.9532 4.2949 -3.4834 18 1 9.2372 3.3253 -3.8651 19 6 9.1264 5.4274 -4.2671 20 7 8.7811 6.6090 -3.8016 21 14 9.8496 5.2742 -5.9826 22 1 10.1519 3.8484 -6.2670 23 1 8.8719 5.7807 -6.9791 24 1 11.0995 6.0718 -6.0660 25 6 8.1857 3.2953 -1.2936 26 6 3.4287 1.2830 -0.0059 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2109 2.3159 -0.0005 31 1 3.7743 4.6589 -0.0005 32 1 5.6090 4.6270 0.0008 33 1 9.2689 3.3003 1.2301 34 1 7.9152 2.1446 1.2114 35 1 7.7791 3.6599 2.1354 36 1 7.3964 6.0266 0.4925 37 1 9.0955 5.4786 0.3007 38 1 8.6674 6.4760 -1.8523 39 1 6.9706 5.9056 -1.8708 40 1 8.9025 7.4004 -4.3492 41 1 9.1252 2.7873 -1.0760 42 1 7.4750 2.5910 -1.7259 43 1 4.0181 0.3780 -0.0102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046719752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:40 Heat of formation + Delta-G solvation = -39.836556 kcal Electronic energy + Delta-G solvation = -27091.852917 eV Core-core repulsion = 23163.517669 eV Total energy + Delta-G solvation = -3928.335247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80610 -40.90191 -39.15658 -38.41915 -37.28139 -35.79876 -33.84996 -32.40350 -31.83845 -30.95009 -30.29290 -28.26720 -27.54738 -25.71410 -24.87669 -23.69795 -22.33082 -21.88046 -20.51656 -19.82347 -18.88501 -17.89707 -17.37493 -17.27666 -16.94643 -16.81772 -16.64665 -16.08648 -15.97826 -15.56989 -15.34866 -14.86862 -14.68960 -14.46279 -14.20450 -14.04424 -13.62036 -13.41150 -13.31668 -13.20954 -13.03416 -12.87763 -12.82394 -12.78389 -12.29872 -12.12064 -12.07187 -12.03223 -11.95207 -11.85725 -11.68687 -11.57500 -10.83157 -10.75182 -10.20855 -10.00133 -9.45938 -8.88168 -7.78571 -5.21845 -0.46103 0.02778 0.90830 1.45628 1.45883 1.56634 1.66114 1.90608 2.33338 2.48492 2.58258 3.30503 3.40139 3.64301 3.70854 3.73180 3.83802 3.98295 4.01601 4.09074 4.17404 4.26289 4.38256 4.39448 4.63910 4.68237 4.73673 4.76759 4.85688 4.86383 4.90904 4.93707 5.01304 5.03502 5.10049 5.23760 5.35001 5.43635 5.59675 5.65624 5.80806 6.20812 6.31595 6.50418 7.10772 7.15608 7.77428 8.40774 9.22902 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003027 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.693593 B = 9247.276578 C = 9590.268362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.136 3.864 4 C -0.169 4.169 5 C -0.004 4.004 6 Cl -0.048 7.048 7 C -0.115 4.115 8 C -0.087 4.087 9 C 0.558 3.442 10 O -0.560 6.560 11 N -0.694 5.694 12 C 0.169 3.831 13 C -0.142 4.142 14 C -0.127 4.127 15 C 0.154 3.846 16 N -0.623 5.623 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.977 3.023 22 H -0.273 1.273 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.136 3.864 26 C -0.104 4.104 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.151 0.849 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.077 0.923 39 H -0.007 1.007 40 H 0.248 0.752 41 H 0.024 0.976 42 H 0.007 0.993 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.362 -5.907 13.628 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.090 3.910 4 C -0.188 4.188 5 C -0.031 4.031 6 Cl -0.019 7.019 7 C -0.134 4.134 8 C -0.091 4.091 9 C 0.346 3.654 10 O -0.440 6.440 11 N -0.346 5.346 12 C 0.083 3.917 13 C -0.200 4.200 14 C -0.166 4.166 15 C 0.030 3.970 16 N -0.349 5.349 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.253 4.253 20 N -0.592 5.592 21 Si 0.806 3.194 22 H -0.198 1.198 23 H -0.218 1.218 24 H -0.213 1.213 25 C 0.010 3.990 26 C -0.124 4.124 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.188 0.812 31 H 0.168 0.832 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.011 0.989 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.025 0.975 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.825 -6.564 13.457 24.053 hybrid contribution -0.033 0.525 -1.357 1.456 sum -18.858 -6.039 12.100 23.206 Atomic orbital electron populations 1.23504 0.75630 1.06237 1.02826 1.86138 1.24102 1.25346 1.88267 1.18602 0.91206 0.85051 0.96174 1.21481 1.02241 0.89596 1.05516 1.20509 0.91302 0.88438 1.02884 1.98399 1.71285 1.35480 1.96714 1.21224 0.92238 0.98713 1.01253 1.19503 0.92166 0.93611 1.03794 1.18311 0.87502 0.83576 0.76005 1.90733 1.66431 1.35925 1.50866 1.45824 1.07036 1.08141 1.73595 1.21232 0.78928 0.97100 0.94480 1.21978 1.01195 1.01139 0.95671 1.23224 1.02582 0.93139 0.97641 1.21771 0.96737 0.90011 0.88515 1.44785 1.73200 1.03363 1.13558 1.19395 1.33288 0.93637 0.90655 0.91274 1.25527 1.02432 0.95100 1.02270 1.70008 1.54443 0.97805 1.36987 0.85032 0.77457 0.77462 0.79498 1.19830 1.21757 1.21312 1.21675 0.96527 0.90573 0.90241 1.20568 0.92342 0.98043 1.01406 0.91266 0.85923 0.90837 0.81158 0.83174 0.75342 0.90959 0.92219 0.90266 0.87955 0.89501 0.90491 0.98902 0.94179 0.95769 0.97461 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.11 10.49 -92.58 -0.97 -7.09 16 3 C 0.14 2.87 6.68 22.46 0.15 3.02 16 4 C -0.17 -2.93 8.81 22.44 0.20 -2.73 16 5 C 0.00 -0.09 6.31 22.27 0.14 0.05 16 6 Cl -0.05 -0.83 28.95 -2.72 -0.08 -0.91 16 7 C -0.11 -2.57 9.32 22.56 0.21 -2.36 16 8 C -0.09 -2.37 5.87 -20.10 -0.12 -2.49 16 9 C 0.56 18.43 6.99 86.79 0.61 19.04 16 10 O -0.56 -22.04 13.32 -3.87 -0.05 -22.09 16 11 N -0.69 -21.57 5.10 -420.35 -2.14 -23.71 16 12 C 0.17 5.87 0.81 4.79 0.00 5.88 16 13 C -0.14 -4.19 8.36 71.98 0.60 -3.59 16 14 C -0.13 -4.35 6.09 31.99 0.19 -4.15 16 15 C 0.15 7.34 5.87 86.85 0.51 7.85 16 16 N -0.62 -33.08 3.39 -692.00 -2.35 -35.43 16 17 C -0.24 -14.05 10.27 84.03 0.86 -13.19 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 20 N -0.94 -55.56 10.09 21.65 0.22 -55.34 16 21 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 C 0.14 6.23 6.16 86.73 0.53 6.76 16 26 C -0.10 -2.72 9.53 22.64 0.22 -2.50 16 27 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 28 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.44 7.66 -2.39 -0.02 0.43 16 30 H 0.17 1.89 6.28 -2.91 -0.02 1.87 16 31 H 0.15 2.95 6.40 -2.91 -0.02 2.93 16 32 H 0.41 10.63 6.52 -92.71 -0.60 10.03 16 33 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 34 H 0.06 1.98 6.27 -2.39 -0.01 1.96 16 35 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.10 2.73 8.06 -2.39 -0.02 2.71 16 37 H 0.09 2.87 8.04 -2.39 -0.02 2.85 16 38 H 0.08 4.18 5.87 -2.38 -0.01 4.16 16 39 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.02 1.13 7.82 -2.39 -0.02 1.11 16 42 H 0.01 0.37 6.68 -2.39 -0.02 0.36 16 43 H 0.14 3.89 7.65 -2.91 -0.02 3.87 16 Total: -1.00 -72.36 362.17 2.79 -69.57 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.45 Total: 16.60 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.69 Total: 9.79 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.28 Total: -114.49 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.02 Total: -29.17 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -72.36 2.79 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046719752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.735 kcal (2) G-P(sol) polarization free energy of solvation -72.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds