Wall clock time and date at job start Tue Mar 31 2020 20:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35731 * 117.00070 * 2 1 4 4 C 1.38974 * 119.91217 * 359.97438 * 3 2 1 5 5 C 1.37715 * 120.10069 * 179.97438 * 4 3 2 6 6 C 1.39740 * 119.93293 * 0.02562 * 5 4 3 7 7 C 1.47602 * 120.08285 * 180.02562 * 6 5 4 8 8 O 1.21580 * 119.99905 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99936 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99849 * 179.97438 * 9 7 6 11 11 C 1.52992 * 110.64274 * 300.70513 * 10 9 7 12 12 C 1.55160 * 110.71637 * 177.55979 * 10 9 7 13 13 C 1.55384 * 101.36875 * 277.04544 * 12 10 9 14 14 N 1.47417 * 104.87439 * 323.02015 * 13 12 10 15 15 C 1.36939 * 125.65103 * 204.09720 * 14 13 12 16 16 H 1.07999 * 120.00362 * 180.02562 * 15 14 13 17 17 C 1.38812 * 119.99726 * 0.03717 * 15 14 13 18 18 N 1.31625 * 120.00188 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47209 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47264 * 120.00442 * 19 17 15 22 22 H 1.48509 * 109.47518 * 240.00196 * 19 17 15 23 23 C 1.47020 * 108.70601 * 24.13276 * 14 13 12 24 24 C 1.39717 * 119.83297 * 0.02562 * 6 5 4 25 25 C 1.37818 * 119.89791 * 359.97438 * 24 6 5 26 26 Cl 1.73601 * 119.96770 * 180.02562 * 25 24 6 27 27 H 1.09004 * 109.47178 * 60.00513 * 1 2 3 28 28 H 1.09005 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47581 * 300.00132 * 1 2 3 30 30 H 1.07995 * 119.95303 * 0.25960 * 4 3 2 31 31 H 1.08005 * 120.03007 * 180.02562 * 5 4 3 32 32 H 0.96997 * 119.99801 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47407 * 59.30133 * 11 10 9 34 34 H 1.09002 * 109.46902 * 179.30132 * 11 10 9 35 35 H 1.08997 * 109.47329 * 299.29428 * 11 10 9 36 36 H 1.09004 * 111.00383 * 35.22277 * 12 10 9 37 37 H 1.09006 * 110.99856 * 159.06827 * 12 10 9 38 38 H 1.08994 * 110.34268 * 204.16637 * 13 12 10 39 39 H 1.08997 * 110.34844 * 81.87477 * 13 12 10 40 40 H 0.96996 * 119.99696 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.88294 * 239.52435 * 23 14 13 42 42 H 1.08994 * 110.01393 * 118.43044 * 23 14 13 43 43 H 1.08002 * 120.05746 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2865 2.3738 -0.0005 5 6 1.9077 3.6028 0.0000 6 6 3.3030 3.6789 0.0005 7 6 3.9722 4.9945 0.0017 8 8 3.3094 6.0137 0.0026 9 7 5.3181 5.0659 0.0027 10 6 5.9823 6.3717 0.0033 11 6 5.5762 7.1839 -1.2280 12 6 7.5235 6.2035 0.0663 13 6 7.7488 6.0137 1.5919 14 7 6.7724 6.9128 2.2334 15 6 6.8813 7.4421 3.4917 16 1 6.1084 8.0932 3.8725 17 6 7.9854 7.1418 4.2776 18 7 8.9278 6.3489 3.8133 19 14 8.1338 7.8631 5.9943 20 1 6.9511 8.7155 6.2770 21 1 8.1996 6.7629 6.9895 22 1 9.3684 8.6839 6.0815 23 6 5.6618 7.1466 1.2988 24 6 4.0630 2.5065 0.0000 25 6 3.4341 1.2802 -0.0005 26 17 4.3767 -0.1777 -0.0005 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2082 2.3147 0.0033 31 1 1.3169 4.5070 0.0000 32 1 5.8469 4.2528 0.0023 33 1 4.4956 7.3265 -1.2290 34 1 6.0708 8.1549 -1.2020 35 1 5.8730 6.6492 -2.1302 36 1 7.8436 5.3236 -0.4918 37 1 8.0292 7.0989 -0.2953 38 1 8.7645 6.3009 1.8635 39 1 7.5569 4.9795 1.8776 40 1 9.6994 6.1394 4.3624 41 1 5.5773 8.2116 1.0824 42 1 4.7294 6.7808 1.7286 43 1 5.1416 2.5611 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046830021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:50 Heat of formation + Delta-G solvation = -18.587624 kcal Electronic energy + Delta-G solvation = -27106.095454 eV Core-core repulsion = 23178.681629 eV Total energy + Delta-G solvation = -3927.413824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75165 -39.80948 -37.91746 -37.02978 -36.39548 -34.07209 -32.23956 -31.15498 -30.70713 -29.59599 -28.62965 -27.77758 -25.66996 -24.13451 -23.32992 -22.92378 -20.86119 -20.31340 -19.05943 -18.75140 -17.70893 -16.89346 -16.52336 -16.23280 -15.58727 -15.43524 -14.74365 -14.68030 -14.51520 -14.38270 -13.97065 -13.70786 -13.43178 -13.31275 -12.78815 -12.73143 -12.40804 -12.24652 -12.02867 -11.82481 -11.72321 -11.56100 -11.43232 -11.32145 -11.11031 -10.91971 -10.85771 -10.41575 -10.34006 -10.04393 -9.96407 -9.66299 -9.34602 -9.25946 -8.71467 -8.63148 -8.46003 -6.79190 -5.63352 -3.03632 0.62350 0.85298 1.92812 2.76051 2.77561 3.35234 3.41838 3.47700 3.50114 3.68760 4.33386 4.45954 4.51441 4.70309 4.75207 4.79798 4.88038 5.07499 5.09477 5.16479 5.31739 5.40256 5.50807 5.57895 5.60812 5.74741 5.81770 6.00518 6.06342 6.16420 6.18850 6.23763 6.35436 6.46124 6.52161 6.70696 6.82179 6.84208 7.13314 7.46549 7.65612 7.77880 7.86268 8.36827 8.46157 9.25205 9.85868 10.50573 11.41038 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013184 B = 0.003017 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.300395 B = 9278.691199 C = 9856.978414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.157 3.843 4 C -0.208 4.208 5 C -0.015 4.015 6 C -0.153 4.153 7 C 0.564 3.436 8 O -0.534 6.534 9 N -0.702 5.702 10 C 0.159 3.841 11 C -0.151 4.151 12 C -0.148 4.148 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.216 4.216 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.924 5.924 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.137 3.863 24 C -0.038 4.038 25 C -0.077 4.077 26 Cl -0.052 7.052 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.396 0.604 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.010 0.990 40 H 0.251 0.749 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 -12.452 -12.617 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.110 3.890 4 C -0.226 4.226 5 C -0.034 4.034 6 C -0.157 4.157 7 C 0.350 3.650 8 O -0.412 6.412 9 N -0.352 5.352 10 C 0.074 3.926 11 C -0.209 4.209 12 C -0.187 4.187 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.345 4.345 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.573 5.573 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.011 3.989 24 C -0.057 4.057 25 C -0.104 4.104 26 Cl -0.023 7.023 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.231 0.769 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.028 0.972 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.048 -12.028 -12.422 22.278 hybrid contribution 0.175 -0.230 1.002 1.043 sum -13.873 -12.258 -11.420 21.751 Atomic orbital electron populations 1.23176 0.77689 1.04460 1.01788 1.86126 1.21875 1.25876 1.87600 1.18905 0.90495 0.85251 0.94363 1.21179 1.00511 0.91235 1.09719 1.21168 0.93240 0.97902 0.91059 1.19943 0.94235 0.92978 1.08504 1.17880 0.82357 0.88108 0.76611 1.90741 1.64740 1.35690 1.50040 1.45924 1.05763 1.09499 1.74062 1.21385 0.93116 0.82272 0.95865 1.22051 1.03358 0.99517 0.95974 1.23454 0.92172 1.01414 1.01640 1.22020 0.97972 0.92478 0.84734 1.44501 1.19807 1.55235 1.13454 1.19137 1.04093 1.22321 0.88910 0.90498 1.24761 0.97189 1.00097 0.98782 1.69783 1.11230 1.40313 1.36015 0.86001 0.77427 0.78175 0.83952 1.20551 1.21831 1.21774 1.21594 0.92250 0.96449 0.88621 1.21114 1.00606 0.89325 0.94691 1.19982 0.88793 0.88962 1.12667 1.98378 1.71594 1.35189 1.97140 0.92203 0.87806 0.92140 0.83941 0.83582 0.76861 0.90771 0.91703 0.93134 0.91846 0.90411 0.87407 0.97160 0.93865 0.95149 0.94933 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.30 -2.94 9.94 -18.90 -0.19 -3.13 16 3 C 0.16 1.70 6.69 -39.00 -0.26 1.44 16 4 C -0.21 -2.00 9.01 -39.50 -0.36 -2.35 16 5 C -0.01 -0.17 9.58 -39.21 -0.38 -0.55 16 6 C -0.15 -2.04 5.87 -104.96 -0.62 -2.65 16 7 C 0.56 9.11 6.98 -12.44 -0.09 9.02 16 8 O -0.53 -10.01 13.28 5.29 0.07 -9.94 16 9 N -0.70 -11.14 5.10 -46.92 -0.24 -11.38 16 10 C 0.16 2.83 0.80 -129.99 -0.10 2.73 16 11 C -0.15 -2.35 8.41 37.15 0.31 -2.04 16 12 C -0.15 -2.66 6.11 -24.32 -0.15 -2.81 16 13 C 0.15 3.61 5.88 -2.27 -0.01 3.60 16 14 N -0.60 -15.66 3.40 -169.78 -0.58 -16.23 16 15 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.14 3.07 6.16 -3.06 -0.02 3.05 16 24 C -0.04 -0.46 9.31 -39.18 -0.36 -0.82 16 25 C -0.08 -0.91 6.33 -39.42 -0.25 -1.16 16 26 Cl -0.05 -0.60 28.49 -51.86 -1.48 -2.08 16 27 H 0.06 0.25 7.65 -51.93 -0.40 -0.14 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 30 H 0.14 0.94 6.28 -52.49 -0.33 0.61 16 31 H 0.15 1.62 7.64 -52.48 -0.40 1.22 16 32 H 0.40 5.46 6.50 -40.82 -0.27 5.19 16 33 H 0.07 1.24 6.20 -51.93 -0.32 0.92 16 34 H 0.06 0.98 8.12 -51.93 -0.42 0.55 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 37 H 0.08 1.37 8.05 -51.93 -0.42 0.96 16 38 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.69 7.80 -51.93 -0.41 0.28 16 42 H 0.03 0.79 6.67 -51.93 -0.35 0.44 16 43 H 0.14 1.54 6.40 -52.49 -0.34 1.21 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -32.92 361.32 -8.55 -41.47 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.58 Total: 2.94 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.54 Total: 1.81 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.26 Total: -53.89 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.12 Total: -13.07 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.92 -8.55 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046830021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.882 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds