Wall clock time and date at job start Tue Mar 31 2020 20:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31241 * 124.05649 * 2 1 4 4 N 1.27341 * 120.03720 * 180.33385 * 3 2 1 5 5 S 1.56639 * 109.73847 * 359.72434 * 4 3 2 6 6 C 1.38251 * 124.05358 * 179.83028 * 2 1 3 7 7 C 1.47168 * 128.47343 * 359.97438 * 6 2 1 8 8 O 1.21620 * 120.00409 * 359.70538 * 7 6 2 9 9 N 1.34779 * 119.99703 * 179.69771 * 7 6 2 10 10 C 1.46497 * 119.99883 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47085 * 180.02562 * 10 9 7 12 12 H 1.08992 * 110.63874 * 307.87772 * 11 10 9 13 13 C 1.55059 * 110.58197 * 184.99868 * 11 10 9 14 14 C 1.55030 * 102.12935 * 204.93083 * 13 11 10 15 15 C 1.53322 * 103.78366 * 20.86698 * 14 13 11 16 16 C 1.52652 * 115.56243 * 133.64213 * 15 14 13 17 17 N 1.47222 * 87.77949 * 90.04529 * 16 15 14 18 18 C 1.36932 * 135.96431 * 206.41651 * 17 16 15 19 19 H 1.08004 * 120.00066 * 6.79093 * 18 17 16 20 20 C 1.38808 * 119.99884 * 186.79269 * 18 17 16 21 21 N 1.31629 * 119.99858 * 172.34298 * 20 18 17 22 22 Si 1.86797 * 120.00274 * 352.34104 * 20 18 17 23 23 H 1.48502 * 109.47471 * 175.35206 * 22 20 18 24 24 H 1.48504 * 109.47042 * 55.35242 * 22 20 18 25 25 H 1.48501 * 109.47081 * 295.35483 * 22 20 18 26 26 C 1.47219 * 88.06699 * 26.66772 * 17 16 15 27 27 O 1.42842 * 108.32807 * 1.60437 * 15 14 13 28 28 H 1.08998 * 109.46701 * 270.17324 * 1 2 3 29 29 H 1.09001 * 109.46401 * 30.16893 * 1 2 3 30 30 H 1.08996 * 109.47115 * 150.16766 * 1 2 3 31 31 H 0.96994 * 119.99774 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47350 * 60.00170 * 10 9 7 33 33 H 1.09006 * 109.47215 * 300.00587 * 10 9 7 34 34 H 1.09008 * 110.87007 * 86.77543 * 13 11 10 35 35 H 1.08996 * 110.87404 * 323.09572 * 13 11 10 36 36 H 1.08993 * 110.56812 * 262.29252 * 14 13 11 37 37 H 1.08997 * 110.68568 * 139.49791 * 14 13 11 38 38 H 1.09002 * 113.50148 * 335.31600 * 16 15 14 39 39 H 1.09005 * 113.56183 * 204.78256 * 16 15 14 40 40 H 0.96991 * 120.00047 * 4.89162 * 21 20 18 41 41 H 1.09004 * 113.49685 * 88.06070 * 26 17 16 42 42 H 1.08993 * 113.49991 * 218.60291 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9981 -0.0064 5 16 3.9367 -0.5097 -0.0063 6 6 2.2812 -1.1454 0.0034 7 6 1.8393 -2.5492 0.0081 8 8 0.6521 -2.8131 0.0148 9 7 2.7504 -3.5424 0.0048 10 6 2.3106 -4.9398 0.0088 11 6 3.5334 -5.8594 0.0045 12 1 4.2131 -5.5909 -0.8041 13 6 3.0994 -7.3430 -0.1178 14 6 4.2956 -8.0868 0.5297 15 6 4.9692 -7.0134 1.3928 16 6 5.3341 -7.4424 2.8117 17 7 6.6399 -7.8719 2.2847 18 6 7.5888 -8.7940 2.6372 19 1 7.3932 -9.4907 3.4390 20 6 8.8021 -8.8334 1.9642 21 7 9.7698 -9.6138 2.3970 22 14 9.0618 -7.7792 0.4441 23 1 10.4660 -7.9160 -0.0193 24 1 8.7857 -6.3580 0.7744 25 1 8.1399 -8.2256 -0.6312 26 6 6.4818 -6.8713 1.2163 27 8 4.2138 -5.8064 1.2793 28 1 -0.3633 0.0031 1.0277 29 1 -0.3632 0.8885 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 3.6972 -3.3320 -0.0003 32 1 1.7068 -5.1333 -0.8778 33 1 1.7157 -5.1309 0.9021 34 1 2.9843 -7.6290 -1.1634 35 1 2.1806 -7.5260 0.4393 36 1 4.9817 -8.4483 -0.2361 37 1 3.9458 -8.9124 1.1495 38 1 4.7252 -8.2648 3.1873 39 1 5.4008 -6.6119 3.5145 40 1 9.6123 -10.2135 3.1428 41 1 6.8600 -5.8850 1.4852 42 1 6.8417 -7.2117 0.2454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053572881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:24 Heat of formation + Delta-G solvation = 59.148322 kcal Electronic energy + Delta-G solvation = -26620.450111 eV Core-core repulsion = 22730.743628 eV Total energy + Delta-G solvation = -3889.706483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36330 -40.44613 -39.71290 -37.10994 -34.98933 -33.67912 -32.40985 -32.15964 -30.22546 -28.60301 -27.37572 -27.00520 -25.60885 -24.22762 -22.55154 -21.68304 -21.39794 -20.60572 -19.24616 -18.90442 -17.94177 -17.54482 -16.87098 -16.49190 -16.14033 -15.85846 -15.35816 -15.04172 -14.72305 -14.57330 -14.28090 -13.81854 -13.46362 -13.42089 -13.28756 -13.19775 -13.13865 -12.81479 -12.47010 -12.15520 -11.94278 -11.68015 -11.52576 -11.35048 -11.17066 -10.77562 -10.75176 -10.52218 -10.41511 -10.40783 -10.26082 -10.13020 -9.94497 -9.52491 -9.28631 -8.93995 -8.90436 -7.23571 -6.39597 -3.30858 -0.67884 0.40768 1.06577 1.53245 2.52581 2.58127 3.32096 3.37004 3.47631 3.58139 3.67689 4.13900 4.29138 4.44111 4.52134 4.57377 4.75421 4.79015 4.85165 4.88694 5.01725 5.20666 5.24084 5.30080 5.32698 5.36526 5.46736 5.66315 5.71996 5.77711 5.93275 6.06269 6.13568 6.13895 6.22524 6.24364 6.29517 6.46284 6.91363 6.99230 7.19760 7.24894 7.61446 8.16348 8.89993 9.41807 10.26880 11.13281 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002685 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.072661 B =10425.195891 C =11483.275086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.103 3.897 3 N -0.252 5.252 4 N -0.251 5.251 5 S 0.427 5.573 6 C -0.298 4.298 7 C 0.605 3.395 8 O -0.517 6.517 9 N -0.714 5.714 10 C 0.130 3.870 11 C 0.059 3.941 12 H 0.078 0.922 13 C -0.145 4.145 14 C -0.114 4.114 15 C 0.060 3.940 16 C 0.133 3.867 17 N -0.619 5.619 18 C -0.303 4.303 19 H 0.085 0.915 20 C -0.024 4.024 21 N -0.932 5.932 22 Si 1.070 2.930 23 H -0.294 1.294 24 H -0.286 1.286 25 H -0.294 1.294 26 C 0.089 3.911 27 O -0.356 6.356 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.405 0.595 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.262 0.738 41 H 0.052 0.948 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.354 15.022 -8.687 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 N -0.118 5.118 4 N -0.232 5.232 5 S 0.563 5.437 6 C -0.439 4.439 7 C 0.388 3.612 8 O -0.393 6.393 9 N -0.366 5.366 10 C 0.007 3.993 11 C 0.000 4.000 12 H 0.096 0.904 13 C -0.183 4.183 14 C -0.151 4.151 15 C 0.019 3.981 16 C 0.007 3.993 17 N -0.350 5.350 18 C -0.429 4.429 19 H 0.102 0.898 20 C -0.223 4.223 21 N -0.574 5.574 22 Si 0.903 3.097 23 H -0.221 1.221 24 H -0.213 1.213 25 H -0.222 1.222 26 C -0.036 4.036 27 O -0.274 6.274 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.240 0.760 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.263 16.362 -9.580 24.980 hybrid contribution -1.697 -1.015 1.186 2.306 sum -17.961 15.347 -8.393 25.072 Atomic orbital electron populations 1.20543 0.83701 1.05010 1.04480 1.22987 1.00265 0.85000 0.96163 1.70645 0.96916 1.27946 1.16308 1.78883 1.09442 1.15783 1.19099 1.82743 1.09380 1.01347 1.50184 1.27734 0.98371 0.99931 1.17851 1.16376 0.85867 0.81938 0.77017 1.90816 1.15713 1.83100 1.49713 1.45826 1.09743 1.06386 1.74649 1.21559 0.95971 0.78052 1.03745 1.23398 0.92997 0.95192 0.88371 0.90384 1.23140 0.99523 0.93543 1.02078 1.22389 0.95956 0.97685 0.99103 1.23721 0.91460 0.83917 0.98975 1.22363 0.87615 0.96831 0.92515 1.45708 1.20635 1.39038 1.29592 1.20087 0.94474 1.09862 1.18474 0.89780 1.25747 0.90623 1.02554 1.03364 1.70922 1.30728 1.26453 1.29290 0.83698 0.74891 0.75624 0.75501 1.22137 1.21256 1.22244 1.23201 0.92231 0.94250 0.93955 1.88774 1.63383 1.39951 1.35289 0.89213 0.89819 0.88030 0.76049 0.89450 0.89758 0.89928 0.90079 0.90070 0.89832 0.93142 0.93656 0.92825 0.93064 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.89 36.01 0.36 -0.22 16 2 C 0.10 1.01 7.00 -82.84 -0.58 0.43 16 3 N -0.25 -2.81 11.54 33.42 0.39 -2.42 16 4 N -0.25 -2.72 12.51 60.35 0.75 -1.96 16 5 S 0.43 3.49 23.05 -107.50 -2.48 1.01 16 6 C -0.30 -2.82 6.81 -35.95 -0.24 -3.06 16 7 C 0.60 6.18 7.80 -12.63 -0.10 6.09 16 8 O -0.52 -6.39 14.90 5.26 0.08 -6.31 16 9 N -0.71 -6.45 5.55 -61.46 -0.34 -6.79 16 10 C 0.13 1.17 5.41 -4.04 -0.02 1.15 16 11 C 0.06 0.61 3.38 -25.64 -0.09 0.52 16 12 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.14 -1.44 6.60 -24.57 -0.16 -1.60 16 14 C -0.11 -1.59 6.46 -25.49 -0.16 -1.76 16 15 C 0.06 0.99 1.66 -90.66 -0.15 0.84 16 16 C 0.13 2.59 8.20 -8.03 -0.07 2.52 16 17 N -0.62 -14.79 3.66 -184.61 -0.68 -15.46 16 18 C -0.30 -8.52 11.08 -15.06 -0.17 -8.68 16 19 H 0.08 2.49 8.05 -52.48 -0.42 2.06 16 20 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 21 N -0.93 -28.90 13.70 55.49 0.76 -28.14 16 22 Si 1.07 25.99 25.13 -169.99 -4.27 21.72 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 24 H -0.29 -6.47 6.11 56.52 0.35 -6.12 16 25 H -0.29 -6.63 6.63 56.52 0.37 -6.26 16 26 C 0.09 1.82 5.22 -7.88 -0.04 1.78 16 27 O -0.36 -5.06 11.02 -35.23 -0.39 -5.45 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.81 6.48 -51.93 -0.34 0.48 16 31 H 0.40 3.17 7.90 -40.82 -0.32 2.84 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.08 1.20 7.82 -51.93 -0.41 0.80 16 37 H 0.08 1.18 7.81 -51.93 -0.41 0.77 16 38 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.26 8.01 8.73 -40.82 -0.36 7.65 16 41 H 0.05 1.06 7.69 -51.93 -0.40 0.66 16 42 H 0.05 1.07 4.50 -51.93 -0.23 0.83 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -33.75 357.86 -7.85 -41.60 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.55 Total: -0.40 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.52 Total: -2.78 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.88 Total: -54.78 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.31 Total: -11.76 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -4.27 Total: 21.72 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.48 Total: 1.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.75 -7.85 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053572881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.750 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds