Wall clock time and date at job start Tue Mar 31 2020 20:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31241 * 124.05649 * 2 1 4 4 N 1.27341 * 120.03720 * 180.33385 * 3 2 1 5 5 S 1.56639 * 109.73847 * 359.72434 * 4 3 2 6 6 C 1.38251 * 124.05358 * 179.83028 * 2 1 3 7 7 C 1.47168 * 128.47343 * 359.97438 * 6 2 1 8 8 O 1.21620 * 120.00409 * 359.70538 * 7 6 2 9 9 N 1.34779 * 119.99703 * 179.69771 * 7 6 2 10 10 C 1.46497 * 119.99883 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47085 * 180.02562 * 10 9 7 12 12 H 1.08992 * 110.63874 * 307.87772 * 11 10 9 13 13 C 1.55059 * 110.58197 * 184.99868 * 11 10 9 14 14 C 1.55030 * 102.12935 * 204.93083 * 13 11 10 15 15 C 1.53322 * 103.78366 * 20.86698 * 14 13 11 16 16 C 1.52652 * 115.56243 * 133.64213 * 15 14 13 17 17 N 1.47222 * 87.77949 * 90.04529 * 16 15 14 18 18 C 1.36932 * 135.96431 * 206.41651 * 17 16 15 19 19 H 1.08004 * 120.00066 * 6.79093 * 18 17 16 20 20 C 1.38808 * 119.99884 * 186.79269 * 18 17 16 21 21 N 1.31629 * 119.99858 * 172.34298 * 20 18 17 22 22 Si 1.86797 * 120.00274 * 352.34104 * 20 18 17 23 23 H 1.48502 * 109.47471 * 175.35206 * 22 20 18 24 24 H 1.48504 * 109.47042 * 55.35242 * 22 20 18 25 25 H 1.48501 * 109.47081 * 295.35483 * 22 20 18 26 26 C 1.47219 * 88.06699 * 26.66772 * 17 16 15 27 27 O 1.42842 * 108.32807 * 1.60437 * 15 14 13 28 28 H 1.08998 * 109.46701 * 270.17324 * 1 2 3 29 29 H 1.09001 * 109.46401 * 30.16893 * 1 2 3 30 30 H 1.08996 * 109.47115 * 150.16766 * 1 2 3 31 31 H 0.96994 * 119.99774 * 0.02562 * 9 7 6 32 32 H 1.09002 * 109.47350 * 60.00170 * 10 9 7 33 33 H 1.09006 * 109.47215 * 300.00587 * 10 9 7 34 34 H 1.09008 * 110.87007 * 86.77543 * 13 11 10 35 35 H 1.08996 * 110.87404 * 323.09572 * 13 11 10 36 36 H 1.08993 * 110.56812 * 262.29252 * 14 13 11 37 37 H 1.08997 * 110.68568 * 139.49791 * 14 13 11 38 38 H 1.09002 * 113.50148 * 335.31600 * 16 15 14 39 39 H 1.09005 * 113.56183 * 204.78256 * 16 15 14 40 40 H 0.96991 * 120.00047 * 4.89162 * 21 20 18 41 41 H 1.09004 * 113.49685 * 88.06070 * 26 17 16 42 42 H 1.08993 * 113.49991 * 218.60291 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9981 -0.0064 5 16 3.9367 -0.5097 -0.0063 6 6 2.2812 -1.1454 0.0034 7 6 1.8393 -2.5492 0.0081 8 8 0.6521 -2.8131 0.0148 9 7 2.7504 -3.5424 0.0048 10 6 2.3106 -4.9398 0.0088 11 6 3.5334 -5.8594 0.0045 12 1 4.2131 -5.5909 -0.8041 13 6 3.0994 -7.3430 -0.1178 14 6 4.2956 -8.0868 0.5297 15 6 4.9692 -7.0134 1.3928 16 6 5.3341 -7.4424 2.8117 17 7 6.6399 -7.8719 2.2847 18 6 7.5888 -8.7940 2.6372 19 1 7.3932 -9.4907 3.4390 20 6 8.8021 -8.8334 1.9642 21 7 9.7698 -9.6138 2.3970 22 14 9.0618 -7.7792 0.4441 23 1 10.4660 -7.9160 -0.0193 24 1 8.7857 -6.3580 0.7744 25 1 8.1399 -8.2256 -0.6312 26 6 6.4818 -6.8713 1.2163 27 8 4.2138 -5.8064 1.2793 28 1 -0.3633 0.0031 1.0277 29 1 -0.3632 0.8885 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 3.6972 -3.3320 -0.0003 32 1 1.7068 -5.1333 -0.8778 33 1 1.7157 -5.1309 0.9021 34 1 2.9843 -7.6290 -1.1634 35 1 2.1806 -7.5260 0.4393 36 1 4.9817 -8.4483 -0.2361 37 1 3.9458 -8.9124 1.1495 38 1 4.7252 -8.2648 3.1873 39 1 5.4008 -6.6119 3.5145 40 1 9.6123 -10.2135 3.1428 41 1 6.8600 -5.8850 1.4852 42 1 6.8417 -7.2117 0.2454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053572881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:23 Heat of formation + Delta-G solvation = 32.868959 kcal Electronic energy + Delta-G solvation = -26621.589670 eV Core-core repulsion = 22730.743628 eV Total energy + Delta-G solvation = -3890.846042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09518 -41.63769 -40.58267 -38.42260 -35.88811 -34.49795 -34.36932 -33.12823 -31.26496 -29.72577 -28.42684 -28.00980 -27.20606 -25.28992 -23.52334 -22.99278 -22.40907 -21.37897 -20.76976 -19.59307 -19.49845 -18.70665 -17.79596 -17.45858 -17.23350 -16.93007 -16.39684 -16.23332 -15.89818 -15.69287 -15.22868 -15.10765 -14.98860 -14.51509 -14.24376 -14.11011 -13.94674 -13.56071 -13.52400 -13.50017 -13.19229 -12.71174 -12.65742 -12.56827 -12.38737 -12.22391 -12.00971 -11.71374 -11.52411 -11.41249 -11.31959 -11.16258 -11.01822 -10.98446 -10.81869 -10.32164 -10.24648 -9.23461 -8.67854 -5.50088 -1.40152 -0.27062 0.36446 0.79709 1.37343 1.48390 1.67996 1.78282 1.84662 2.53841 2.58129 2.79265 2.97923 3.24650 3.41818 3.45380 3.57612 3.59514 3.69118 3.92894 4.13768 4.23501 4.40580 4.43628 4.50533 4.62024 4.64870 4.67512 4.70476 4.77040 4.83766 4.85818 4.93325 5.02184 5.08827 5.13720 5.17285 5.24673 5.28580 5.92217 6.02570 6.20618 6.53539 6.67015 6.88361 7.29096 8.22885 8.88073 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002685 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.072661 B =10425.195891 C =11483.275086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.097 3.903 3 N -0.275 5.275 4 N -0.283 5.283 5 S 0.490 5.510 6 C -0.311 4.311 7 C 0.607 3.393 8 O -0.540 6.540 9 N -0.710 5.710 10 C 0.134 3.866 11 C 0.056 3.944 12 H 0.096 0.904 13 C -0.132 4.132 14 C -0.118 4.118 15 C 0.088 3.912 16 C 0.125 3.875 17 N -0.649 5.649 18 C -0.289 4.289 19 H 0.051 0.949 20 C -0.084 4.084 21 N -0.969 5.969 22 Si 1.107 2.893 23 H -0.306 1.306 24 H -0.261 1.261 25 H -0.264 1.264 26 C 0.081 3.919 27 O -0.363 6.363 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.411 0.589 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.246 0.754 41 H 0.053 0.947 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.243 16.360 -10.805 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 N -0.140 5.140 4 N -0.264 5.264 5 S 0.626 5.374 6 C -0.452 4.452 7 C 0.391 3.609 8 O -0.419 6.419 9 N -0.361 5.361 10 C 0.011 3.989 11 C -0.002 4.002 12 H 0.114 0.886 13 C -0.170 4.170 14 C -0.156 4.156 15 C 0.047 3.953 16 C -0.001 4.001 17 N -0.380 5.380 18 C -0.417 4.417 19 H 0.069 0.931 20 C -0.276 4.276 21 N -0.614 5.614 22 Si 0.932 3.068 23 H -0.234 1.234 24 H -0.186 1.186 25 H -0.191 1.191 26 C -0.044 4.044 27 O -0.281 6.281 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.247 0.753 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.205 17.733 -11.691 27.974 hybrid contribution -1.164 -1.450 1.949 2.694 sum -19.369 16.283 -9.742 27.114 Atomic orbital electron populations 1.20595 0.82540 1.05382 1.05016 1.23313 1.01157 0.84878 0.95735 1.70687 0.97119 1.28803 1.17381 1.78678 1.09656 1.17863 1.20216 1.82438 1.07670 0.99318 1.47953 1.27766 0.99414 0.99673 1.18345 1.16395 0.85619 0.82216 0.76629 1.90807 1.16670 1.83468 1.50933 1.45806 1.09970 1.06313 1.74027 1.21559 0.95312 0.77576 1.04409 1.23669 0.93517 0.96017 0.86962 0.88644 1.23140 0.98042 0.92092 1.03678 1.22423 0.97358 0.97173 0.98670 1.23155 0.89881 0.85599 0.96671 1.22549 0.85766 0.96984 0.94765 1.45727 1.21270 1.39279 1.31705 1.19929 0.95429 1.09648 1.16647 0.93082 1.27129 0.90687 1.03630 1.06162 1.71033 1.32198 1.28215 1.29977 0.83307 0.74765 0.75636 0.73064 1.23385 1.18578 1.19061 1.23394 0.95258 0.92986 0.92774 1.88762 1.63163 1.38545 1.37611 0.88539 0.88545 0.88470 0.75292 0.87361 0.90559 0.87038 0.88804 0.90697 0.90304 0.92622 0.93568 0.94445 0.92964 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.89 71.24 0.70 -0.33 16 2 C 0.10 1.78 7.00 42.65 0.30 2.07 16 3 N -0.27 -5.84 11.54 -48.18 -0.56 -6.40 16 4 N -0.28 -5.76 12.51 37.02 0.46 -5.30 16 5 S 0.49 6.94 23.05 -56.49 -1.30 5.64 16 6 C -0.31 -5.27 6.81 24.62 0.17 -5.10 16 7 C 0.61 10.94 7.80 86.59 0.68 11.62 16 8 O -0.54 -12.22 14.90 -4.10 -0.06 -12.29 16 9 N -0.71 -10.44 5.55 -466.62 -2.59 -13.03 16 10 C 0.13 1.88 5.41 86.38 0.47 2.35 16 11 C 0.06 0.90 3.38 31.30 0.11 1.01 16 12 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 13 C -0.13 -2.00 6.60 31.99 0.21 -1.79 16 14 C -0.12 -2.94 6.46 31.40 0.20 -2.74 16 15 C 0.09 2.68 1.66 -10.82 -0.02 2.67 16 16 C 0.12 4.71 8.20 83.40 0.68 5.40 16 17 N -0.65 -30.62 3.66 -739.09 -2.70 -33.33 16 18 C -0.29 -16.60 11.08 84.03 0.93 -15.67 16 19 H 0.05 3.17 8.05 -2.91 -0.02 3.15 16 20 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 21 N -0.97 -62.10 13.70 21.65 0.30 -61.80 16 22 Si 1.11 51.60 25.13 68.60 1.72 53.32 16 23 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.26 -10.94 6.11 99.48 0.61 -10.34 16 25 H -0.26 -10.93 6.63 99.48 0.66 -10.27 16 26 C 0.08 3.10 5.22 83.50 0.44 3.53 16 27 O -0.36 -9.02 11.02 -148.98 -1.64 -10.66 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.44 6.48 -2.39 -0.02 1.43 16 31 H 0.41 4.95 7.90 -92.71 -0.73 4.21 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 34 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 1.24 8.05 -2.39 -0.02 1.22 16 36 H 0.07 1.98 7.82 -2.39 -0.02 1.96 16 37 H 0.08 2.04 7.81 -2.39 -0.02 2.02 16 38 H 0.06 2.01 7.91 -2.39 -0.02 1.99 16 39 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.25 15.87 8.73 -92.72 -0.81 15.07 16 41 H 0.05 2.00 7.69 -2.38 -0.02 1.99 16 42 H 0.06 2.08 4.50 -2.39 -0.01 2.07 16 Total: -1.00 -75.31 357.86 -0.88 -76.19 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.15 Total: 9.14 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.33 Total: -1.50 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.09 Total: -119.85 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.70 Total: -22.95 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 1.72 Total: 53.32 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.30 Total: 5.64 kcal Total: -75.31 -0.88 -76.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053572881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.062 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds