Wall clock time and date at job start Tue Mar 31 2020 20:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31245 * 124.05483 * 2 1 4 4 N 1.27339 * 120.03359 * 180.36752 * 3 2 1 5 5 S 1.56635 * 109.74069 * 359.69606 * 4 3 2 6 6 C 1.38242 * 124.05694 * 179.82228 * 2 1 3 7 7 C 1.47173 * 128.47251 * 359.96530 * 6 2 1 8 8 O 1.21622 * 120.00471 * 359.71558 * 7 6 2 9 9 N 1.34776 * 119.99754 * 179.70389 * 7 6 2 10 10 C 1.46505 * 119.99832 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46811 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.82640 * 59.44180 * 11 10 9 13 13 C 1.54480 * 109.90506 * 180.37854 * 11 10 9 14 14 C 1.55504 * 102.38368 * 140.92256 * 13 11 10 15 15 C 1.53878 * 100.76167 * 327.03005 * 14 13 11 16 16 C 1.52380 * 115.67635 * 263.23618 * 15 14 13 17 17 N 1.47280 * 87.70356 * 218.74344 * 16 15 14 18 18 C 1.36935 * 135.93839 * 205.92138 * 17 16 15 19 19 H 1.08001 * 120.00037 * 356.16366 * 18 17 16 20 20 C 1.38808 * 119.99798 * 176.16570 * 18 17 16 21 21 N 1.31616 * 120.00340 * 6.70284 * 20 18 17 22 22 Si 1.86808 * 119.99852 * 186.70319 * 20 18 17 23 23 H 1.48497 * 109.47123 * 94.97947 * 22 20 18 24 24 H 1.48497 * 109.47146 * 214.98594 * 22 20 18 25 25 H 1.48501 * 109.46822 * 334.97838 * 22 20 18 26 26 C 1.47284 * 88.12726 * 26.17815 * 17 16 15 27 27 O 1.42403 * 106.67139 * 34.97716 * 15 14 13 28 28 H 1.08991 * 109.47214 * 270.18437 * 1 2 3 29 29 H 1.09004 * 109.47237 * 30.17952 * 1 2 3 30 30 H 1.08999 * 109.47141 * 150.17844 * 1 2 3 31 31 H 0.96999 * 120.00201 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.46895 * 60.01033 * 10 9 7 33 33 H 1.08992 * 109.47397 * 300.00652 * 10 9 7 34 34 H 1.09001 * 110.82087 * 259.14312 * 13 11 10 35 35 H 1.08994 * 110.82193 * 22.50356 * 13 11 10 36 36 H 1.08997 * 111.15734 * 209.14800 * 14 13 11 37 37 H 1.09003 * 111.16195 * 84.90426 * 14 13 11 38 38 H 1.09001 * 113.51228 * 104.04327 * 16 15 14 39 39 H 1.08998 * 113.51655 * 333.45193 * 16 15 14 40 40 H 0.97007 * 119.99749 * 179.97438 * 21 20 18 41 41 H 1.08998 * 113.51260 * 88.52938 * 26 17 16 42 42 H 1.08998 * 113.51444 * 219.11251 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0874 0.0000 4 7 3.5122 0.9981 -0.0071 5 16 3.9366 -0.5097 -0.0069 6 6 2.2812 -1.1453 0.0036 7 6 1.8393 -2.5491 0.0086 8 8 0.6521 -2.8131 0.0153 9 7 2.7504 -3.5423 0.0055 10 6 2.3106 -4.9398 0.0100 11 6 3.5335 -5.8593 0.0059 12 1 4.1464 -5.6632 0.8856 13 6 3.0810 -7.3363 0.0009 14 6 4.1100 -7.9971 -0.9596 15 6 4.3684 -6.8419 -1.9427 16 6 3.5625 -6.8821 -3.2353 17 7 4.7675 -6.4007 -3.9320 18 6 5.0266 -5.6972 -5.0778 19 1 4.2161 -5.4163 -5.7341 20 6 6.3310 -5.3449 -5.3959 21 7 7.3308 -5.7978 -4.6696 22 14 6.6675 -4.2280 -6.8551 23 1 6.7774 -2.8228 -6.3878 24 1 7.9387 -4.6340 -7.5064 25 1 5.5538 -4.3396 -7.8310 26 6 5.5723 -7.0126 -2.8610 27 8 4.3051 -5.6382 -1.1843 28 1 -0.3633 0.0033 1.0276 29 1 -0.3634 0.8884 -0.5166 30 1 -0.3633 -0.8916 -0.5111 31 1 3.6973 -3.3319 0.0004 32 1 1.7070 -5.1335 -0.8767 33 1 1.7159 -5.1307 0.9032 34 1 3.1517 -7.7665 0.9999 35 1 2.0673 -7.4296 -0.3886 36 1 3.6764 -8.8577 -1.4689 37 1 5.0214 -8.2742 -0.4297 38 1 2.7361 -6.1716 -3.2547 39 1 3.2625 -7.8877 -3.5297 40 1 8.2424 -5.5519 -4.8922 41 1 5.8296 -8.0545 -3.0516 42 1 6.4327 -6.4118 -2.5663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053572882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:28 Heat of formation + Delta-G solvation = 56.936658 kcal Electronic energy + Delta-G solvation = -27053.731873 eV Core-core repulsion = 23163.929485 eV Total energy + Delta-G solvation = -3889.802388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14802 -40.23516 -39.42028 -36.67493 -34.65546 -33.47104 -32.21265 -31.96851 -30.01014 -28.41359 -27.17539 -26.81262 -24.81381 -24.29057 -22.51035 -21.55058 -21.47216 -20.37897 -19.04986 -18.67671 -17.73599 -16.75375 -16.64548 -16.24934 -15.99187 -15.12498 -15.03927 -14.86936 -14.51993 -14.27456 -14.00236 -13.67833 -13.28674 -13.21045 -13.07166 -12.97517 -12.77909 -12.61414 -12.41560 -11.83787 -11.73664 -11.55475 -11.34914 -11.18349 -11.05784 -10.83628 -10.53761 -10.47220 -10.20836 -10.11144 -10.03651 -9.91999 -9.73526 -9.55292 -9.25886 -8.90072 -8.72175 -6.90128 -5.77923 -3.08255 -0.45758 0.63226 1.28429 1.73979 2.74149 2.85200 3.39309 3.44528 3.46035 3.68320 3.94916 4.35475 4.43630 4.51429 4.60723 4.65530 4.94533 5.08293 5.09293 5.18021 5.35077 5.36926 5.41425 5.47522 5.50387 5.57989 5.62248 5.78294 5.89946 5.96405 6.06031 6.16211 6.19815 6.34100 6.51111 6.61494 6.89725 7.17161 7.18135 7.45773 7.49394 7.70327 7.87007 7.97284 9.02919 9.70157 10.62101 11.40259 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.003815 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.587973 B = 7338.298993 C = 9345.811670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.100 3.900 3 N -0.254 5.254 4 N -0.256 5.256 5 S 0.434 5.566 6 C -0.296 4.296 7 C 0.604 3.396 8 O -0.521 6.521 9 N -0.708 5.708 10 C 0.114 3.886 11 C 0.062 3.938 12 H 0.084 0.916 13 C -0.143 4.143 14 C -0.137 4.137 15 C 0.059 3.941 16 C 0.105 3.895 17 N -0.602 5.602 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.162 3.838 27 O -0.331 6.331 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.406 0.594 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.253 0.747 41 H 0.039 0.961 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 2.250 15.492 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 N -0.120 5.120 4 N -0.236 5.236 5 S 0.570 5.430 6 C -0.437 4.437 7 C 0.387 3.613 8 O -0.398 6.398 9 N -0.359 5.359 10 C -0.009 4.009 11 C 0.003 3.997 12 H 0.102 0.898 13 C -0.181 4.181 14 C -0.175 4.175 15 C 0.018 3.982 16 C -0.022 4.022 17 N -0.328 5.328 18 C -0.343 4.343 19 H 0.098 0.902 20 C -0.201 4.201 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.036 3.964 27 O -0.249 6.249 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.241 0.759 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.634 3.551 15.147 17.793 hybrid contribution -0.571 -0.110 -0.885 1.059 sum -9.206 3.441 14.262 17.320 Atomic orbital electron populations 1.20519 0.83804 1.05062 1.04217 1.22952 1.00209 0.85046 0.96500 1.70633 0.96961 1.27981 1.16419 1.78836 1.09436 1.16012 1.19356 1.82794 1.09347 1.01049 1.49798 1.27750 0.98381 1.00005 1.17527 1.16382 0.85883 0.81969 0.77037 1.90796 1.15757 1.83135 1.50124 1.45734 1.09801 1.06266 1.74117 1.21928 0.96987 0.78965 1.03047 1.23078 0.91776 0.94465 0.90397 0.89840 1.23054 1.00461 0.93677 1.00952 1.22974 0.98979 0.98674 0.96895 1.23337 1.01750 0.82528 0.90571 1.22755 0.92521 0.97120 0.89777 1.45509 1.00970 1.61032 1.25259 1.18901 0.92740 1.25726 0.96938 0.90240 1.24747 0.95279 1.00725 0.99365 1.69826 0.98242 1.47434 1.41052 0.86139 0.77447 0.80736 0.81689 1.21541 1.21680 1.20627 1.22109 0.94016 0.96404 0.83834 1.88382 1.71004 1.33031 1.32498 0.89413 0.89893 0.88022 0.75891 0.90319 0.90213 0.90139 0.90223 0.89842 0.90253 0.93926 0.94200 0.93676 0.94364 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.89 36.01 0.36 -0.39 16 2 C 0.10 1.24 7.00 -82.84 -0.58 0.66 16 3 N -0.25 -3.44 11.54 33.42 0.39 -3.06 16 4 N -0.26 -3.41 12.51 60.35 0.75 -2.66 16 5 S 0.43 4.84 23.04 -107.50 -2.48 2.36 16 6 C -0.30 -3.65 6.80 -35.95 -0.24 -3.90 16 7 C 0.60 7.97 7.80 -12.63 -0.10 7.88 16 8 O -0.52 -7.84 14.90 5.26 0.08 -7.76 16 9 N -0.71 -8.62 5.47 -61.46 -0.34 -8.95 16 10 C 0.11 1.32 5.24 -4.04 -0.02 1.30 16 11 C 0.06 0.73 3.61 -25.95 -0.09 0.63 16 12 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 13 C -0.14 -1.44 6.56 -24.62 -0.16 -1.60 16 14 C -0.14 -1.73 6.49 -24.94 -0.16 -1.89 16 15 C 0.06 1.05 1.55 -90.81 -0.14 0.91 16 16 C 0.10 2.12 8.25 -7.86 -0.06 2.05 16 17 N -0.60 -15.43 3.79 -184.93 -0.70 -16.13 16 18 C -0.22 -6.11 10.73 -15.06 -0.16 -6.27 16 19 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 20 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 21 N -0.92 -27.10 11.54 55.49 0.64 -26.46 16 22 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.16 3.70 6.97 -7.86 -0.05 3.65 16 27 O -0.33 -5.71 10.68 -35.23 -0.38 -6.09 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.09 6.48 -51.93 -0.34 0.75 16 31 H 0.41 4.62 7.83 -40.82 -0.32 4.30 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.75 7.85 -51.93 -0.41 0.35 16 36 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.75 7.98 -51.93 -0.41 0.34 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.04 0.86 8.13 -51.93 -0.42 0.44 16 42 H 0.08 2.02 7.16 -51.93 -0.37 1.64 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -34.01 365.39 -8.68 -42.70 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.61 Total: 0.48 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.52 Total: 2.80 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.74 Total: -57.26 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.30 Total: -13.85 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.48 Total: 2.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.01 -8.68 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053572882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.635 kcal (2) G-P(sol) polarization free energy of solvation -34.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds