Wall clock time and date at job start Tue Mar 31 2020 20:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31245 * 124.05483 * 2 1 4 4 N 1.27339 * 120.03359 * 180.36752 * 3 2 1 5 5 S 1.56635 * 109.74069 * 359.69606 * 4 3 2 6 6 C 1.38242 * 124.05694 * 179.82228 * 2 1 3 7 7 C 1.47173 * 128.47251 * 359.96530 * 6 2 1 8 8 O 1.21622 * 120.00471 * 359.71558 * 7 6 2 9 9 N 1.34776 * 119.99754 * 179.70389 * 7 6 2 10 10 C 1.46505 * 119.99832 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46811 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.82640 * 59.44180 * 11 10 9 13 13 C 1.54480 * 109.90506 * 180.37854 * 11 10 9 14 14 C 1.55504 * 102.38368 * 140.92256 * 13 11 10 15 15 C 1.53878 * 100.76167 * 327.03005 * 14 13 11 16 16 C 1.52380 * 115.67635 * 263.23618 * 15 14 13 17 17 N 1.47280 * 87.70356 * 218.74344 * 16 15 14 18 18 C 1.36935 * 135.93839 * 205.92138 * 17 16 15 19 19 H 1.08001 * 120.00037 * 356.16366 * 18 17 16 20 20 C 1.38808 * 119.99798 * 176.16570 * 18 17 16 21 21 N 1.31616 * 120.00340 * 6.70284 * 20 18 17 22 22 Si 1.86808 * 119.99852 * 186.70319 * 20 18 17 23 23 H 1.48497 * 109.47123 * 94.97947 * 22 20 18 24 24 H 1.48497 * 109.47146 * 214.98594 * 22 20 18 25 25 H 1.48501 * 109.46822 * 334.97838 * 22 20 18 26 26 C 1.47284 * 88.12726 * 26.17815 * 17 16 15 27 27 O 1.42403 * 106.67139 * 34.97716 * 15 14 13 28 28 H 1.08991 * 109.47214 * 270.18437 * 1 2 3 29 29 H 1.09004 * 109.47237 * 30.17952 * 1 2 3 30 30 H 1.08999 * 109.47141 * 150.17844 * 1 2 3 31 31 H 0.96999 * 120.00201 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.46895 * 60.01033 * 10 9 7 33 33 H 1.08992 * 109.47397 * 300.00652 * 10 9 7 34 34 H 1.09001 * 110.82087 * 259.14312 * 13 11 10 35 35 H 1.08994 * 110.82193 * 22.50356 * 13 11 10 36 36 H 1.08997 * 111.15734 * 209.14800 * 14 13 11 37 37 H 1.09003 * 111.16195 * 84.90426 * 14 13 11 38 38 H 1.09001 * 113.51228 * 104.04327 * 16 15 14 39 39 H 1.08998 * 113.51655 * 333.45193 * 16 15 14 40 40 H 0.97007 * 119.99749 * 179.97438 * 21 20 18 41 41 H 1.08998 * 113.51260 * 88.52938 * 26 17 16 42 42 H 1.08998 * 113.51444 * 219.11251 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0874 0.0000 4 7 3.5122 0.9981 -0.0071 5 16 3.9366 -0.5097 -0.0069 6 6 2.2812 -1.1453 0.0036 7 6 1.8393 -2.5491 0.0086 8 8 0.6521 -2.8131 0.0153 9 7 2.7504 -3.5423 0.0055 10 6 2.3106 -4.9398 0.0100 11 6 3.5335 -5.8593 0.0059 12 1 4.1464 -5.6632 0.8856 13 6 3.0810 -7.3363 0.0009 14 6 4.1100 -7.9971 -0.9596 15 6 4.3684 -6.8419 -1.9427 16 6 3.5625 -6.8821 -3.2353 17 7 4.7675 -6.4007 -3.9320 18 6 5.0266 -5.6972 -5.0778 19 1 4.2161 -5.4163 -5.7341 20 6 6.3310 -5.3449 -5.3959 21 7 7.3308 -5.7978 -4.6696 22 14 6.6675 -4.2280 -6.8551 23 1 6.7774 -2.8228 -6.3878 24 1 7.9387 -4.6340 -7.5064 25 1 5.5538 -4.3396 -7.8310 26 6 5.5723 -7.0126 -2.8610 27 8 4.3051 -5.6382 -1.1843 28 1 -0.3633 0.0033 1.0276 29 1 -0.3634 0.8884 -0.5166 30 1 -0.3633 -0.8916 -0.5111 31 1 3.6973 -3.3319 0.0004 32 1 1.7070 -5.1335 -0.8767 33 1 1.7159 -5.1307 0.9032 34 1 3.1517 -7.7665 0.9999 35 1 2.0673 -7.4296 -0.3886 36 1 3.6764 -8.8577 -1.4689 37 1 5.0214 -8.2742 -0.4297 38 1 2.7361 -6.1716 -3.2547 39 1 3.2625 -7.8877 -3.5297 40 1 8.2424 -5.5519 -4.8922 41 1 5.8296 -8.0545 -3.0516 42 1 6.4327 -6.4118 -2.5663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053572882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:27 Heat of formation + Delta-G solvation = 31.671564 kcal Electronic energy + Delta-G solvation = -27054.827450 eV Core-core repulsion = 23163.929485 eV Total energy + Delta-G solvation = -3890.897965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11847 -41.48436 -40.52868 -38.12299 -35.78120 -34.40286 -34.15217 -33.08847 -31.18657 -29.65671 -28.40147 -28.03410 -26.51453 -25.57966 -23.75577 -22.85691 -22.51702 -21.37208 -20.46680 -19.60122 -18.73763 -18.69176 -17.72521 -17.23807 -17.00564 -16.90849 -16.30504 -16.02308 -15.87970 -15.47268 -15.24868 -15.10718 -14.64407 -14.26868 -14.14892 -14.06726 -13.95001 -13.61606 -13.54564 -13.18303 -13.11502 -12.83507 -12.66455 -12.60176 -12.51801 -12.30846 -12.12047 -11.63303 -11.53508 -11.29839 -11.23257 -11.18182 -11.01247 -10.91251 -10.84555 -10.25299 -10.19964 -8.92081 -7.92191 -5.22630 -1.43016 -0.29919 0.33061 0.76834 1.42333 1.44338 1.52549 1.74371 1.88053 2.45131 2.74093 2.81047 3.31578 3.42923 3.44655 3.54991 3.62527 3.74123 3.89825 3.99077 4.20951 4.25426 4.47081 4.59000 4.62354 4.65765 4.74436 4.75037 4.85424 4.94755 4.99089 5.03278 5.11085 5.15596 5.23181 5.24895 5.32968 5.37755 5.53434 5.93133 6.20058 6.39691 6.49656 6.87056 6.90770 7.59497 8.60620 9.25892 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009481 B = 0.003815 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.587973 B = 7338.298993 C = 9345.811670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.098 3.902 3 N -0.273 5.273 4 N -0.281 5.281 5 S 0.481 5.519 6 C -0.312 4.312 7 C 0.604 3.396 8 O -0.542 6.542 9 N -0.706 5.706 10 C 0.116 3.884 11 C 0.057 3.943 12 H 0.107 0.893 13 C -0.131 4.131 14 C -0.129 4.129 15 C 0.082 3.918 16 C 0.104 3.896 17 N -0.638 5.638 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.060 4.060 21 N -0.948 5.948 22 Si 0.972 3.028 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.156 3.844 27 O -0.363 6.363 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.409 0.591 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.249 0.751 41 H 0.037 0.963 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 1.508 17.011 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 N -0.138 5.138 4 N -0.262 5.262 5 S 0.618 5.382 6 C -0.452 4.452 7 C 0.388 3.612 8 O -0.421 6.421 9 N -0.357 5.357 10 C -0.007 4.007 11 C -0.001 4.001 12 H 0.125 0.875 13 C -0.169 4.169 14 C -0.168 4.168 15 C 0.041 3.959 16 C -0.021 4.021 17 N -0.364 5.364 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.253 4.253 21 N -0.597 5.597 22 Si 0.800 3.200 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.030 3.970 27 O -0.282 6.282 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.244 0.756 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.875 2.797 16.687 19.591 hybrid contribution -0.194 0.090 -1.331 1.348 sum -10.069 2.886 15.356 18.588 Atomic orbital electron populations 1.20594 0.82292 1.05190 1.05300 1.23338 1.01243 0.84747 0.95729 1.70671 0.97076 1.28681 1.17333 1.78676 1.09710 1.17619 1.20187 1.82574 1.08106 0.99467 1.48097 1.27789 0.99267 0.99837 1.18331 1.16449 0.85698 0.82308 0.76713 1.90780 1.16529 1.83505 1.51279 1.45795 1.09854 1.06555 1.73519 1.21992 0.96926 0.78455 1.03365 1.23396 0.91726 0.96018 0.88949 0.87495 1.23082 0.99886 0.91592 1.02296 1.22958 1.00592 0.97058 0.96146 1.22895 0.96944 0.85148 0.90900 1.22961 0.91079 0.97502 0.90596 1.45901 1.03993 1.61460 1.25039 1.19242 0.92878 1.25767 0.97895 0.90497 1.25519 0.95174 1.02404 1.02242 1.70004 0.98184 1.48801 1.42701 0.85162 0.77318 0.78572 0.78925 1.21582 1.21700 1.19445 1.22110 0.94568 0.95183 0.85114 1.88345 1.72174 1.33345 1.34359 0.87791 0.88564 0.88945 0.75562 0.92181 0.87645 0.86431 0.89251 0.88345 0.89173 0.94356 0.92159 0.94241 0.94515 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 9.89 71.24 0.70 -0.67 16 2 C 0.10 2.34 7.00 42.65 0.30 2.64 16 3 N -0.27 -7.26 11.54 -48.18 -0.56 -7.81 16 4 N -0.28 -7.38 12.51 37.02 0.46 -6.92 16 5 S 0.48 10.38 23.04 -56.49 -1.30 9.08 16 6 C -0.31 -7.46 6.80 24.62 0.17 -7.29 16 7 C 0.60 15.36 7.80 86.59 0.68 16.04 16 8 O -0.54 -15.79 14.90 -4.10 -0.06 -15.85 16 9 N -0.71 -16.18 5.47 -466.62 -2.55 -18.73 16 10 C 0.12 2.40 5.24 86.38 0.45 2.85 16 11 C 0.06 1.17 3.61 31.10 0.11 1.28 16 12 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 13 C -0.13 -2.04 6.56 31.96 0.21 -1.83 16 14 C -0.13 -2.84 6.49 31.75 0.21 -2.64 16 15 C 0.08 2.83 1.55 -10.91 -0.02 2.81 16 16 C 0.10 4.13 8.25 83.48 0.69 4.82 16 17 N -0.64 -33.28 3.79 -740.40 -2.81 -36.09 16 18 C -0.23 -13.28 10.73 84.03 0.90 -12.38 16 19 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 20 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 21 N -0.95 -57.68 11.54 21.65 0.25 -57.43 16 22 Si 0.97 46.65 29.56 68.60 2.03 48.68 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C 0.16 7.26 6.97 83.48 0.58 7.84 16 27 O -0.36 -12.14 10.68 -148.98 -1.59 -13.73 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.09 1.92 6.48 -2.39 -0.02 1.91 16 31 H 0.41 8.80 7.83 -92.71 -0.73 8.08 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.28 7.85 -2.39 -0.02 1.26 16 36 H 0.10 1.91 7.93 -2.39 -0.02 1.90 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 2.16 7.98 -2.39 -0.02 2.14 16 40 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 41 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 42 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 Total: -1.00 -76.34 365.39 -0.34 -76.68 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.34 Total: 11.67 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 5.45 Total: 10.47 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -5.20 Total: -126.98 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.65 Total: -29.59 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: 10.38 SS G_CDS: -1.30 Total: 9.08 kcal Total: -76.34 -0.34 -76.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053572882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.350 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds