Wall clock time and date at job start Tue Mar 31 2020 20:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31235 * 124.05304 * 2 1 4 4 N 1.27337 * 120.04029 * 180.02562 * 3 2 1 5 5 S 1.56641 * 109.73897 * 359.69056 * 4 3 2 6 6 C 1.38241 * 124.05652 * 180.02562 * 2 1 3 7 7 C 1.47170 * 128.47695 * 359.97438 * 6 2 1 8 8 O 1.21623 * 119.99730 * 50.67185 * 7 6 2 9 9 N 1.34776 * 120.00292 * 230.66669 * 7 6 2 10 10 C 1.46837 * 120.40688 * 355.96827 * 9 7 6 11 11 C 1.53375 * 109.24289 * 127.71802 * 10 9 7 12 12 C 1.52784 * 108.81393 * 53.83805 * 11 10 9 13 13 H 1.09003 * 109.33757 * 57.15697 * 12 11 10 14 14 O 1.42595 * 111.11827 * 177.44948 * 12 11 10 15 15 C 1.43148 * 113.62762 * 183.64876 * 14 12 11 16 16 C 1.53195 * 109.73708 * 298.31494 * 15 14 12 17 17 N 1.47353 * 108.80784 * 51.20164 * 16 15 14 18 18 C 1.36932 * 121.30133 * 129.76848 * 17 16 15 19 19 H 1.08001 * 120.00119 * 208.84818 * 18 17 16 20 20 C 1.38810 * 120.00388 * 28.85138 * 18 17 16 21 21 N 1.31621 * 119.99804 * 14.25516 * 20 18 17 22 22 Si 1.86800 * 120.00224 * 194.25384 * 20 18 17 23 23 H 1.48492 * 109.47343 * 90.00220 * 22 20 18 24 24 H 1.48507 * 109.46899 * 209.99906 * 22 20 18 25 25 H 1.48503 * 109.46912 * 329.99716 * 22 20 18 26 26 C 1.46869 * 117.38882 * 309.76885 * 17 16 15 27 27 H 1.09003 * 110.22186 * 292.01316 * 26 17 16 28 28 C 1.47126 * 120.40925 * 175.94031 * 9 7 6 29 29 H 1.08998 * 109.47380 * 269.97656 * 1 2 3 30 30 H 1.08991 * 109.47447 * 29.98319 * 1 2 3 31 31 H 1.09003 * 109.46819 * 149.98025 * 1 2 3 32 32 H 1.09008 * 109.51062 * 247.64637 * 10 9 7 33 33 H 1.09001 * 109.51555 * 7.78795 * 10 9 7 34 34 H 1.08996 * 109.57786 * 173.63696 * 11 10 9 35 35 H 1.08991 * 109.57891 * 294.03968 * 11 10 9 36 36 H 1.09005 * 109.42808 * 58.39732 * 15 14 12 37 37 H 1.09001 * 109.42879 * 178.23261 * 15 14 12 38 38 H 1.08999 * 109.57968 * 170.99713 * 16 15 14 39 39 H 1.09002 * 109.57817 * 291.26842 * 16 15 14 40 40 H 0.97006 * 120.00068 * 179.97438 * 21 20 18 41 41 H 1.09008 * 109.72586 * 113.59150 * 28 9 7 42 42 H 1.08995 * 109.76560 * 352.94638 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2418 1.0873 0.0000 4 7 3.5121 0.9982 -0.0005 5 16 3.9367 -0.5095 0.0069 6 6 2.2811 -1.1453 -0.0005 7 6 1.8394 -2.5492 -0.0006 8 8 1.0198 -2.9287 -0.8152 9 7 2.3431 -3.4142 0.9018 10 6 3.3970 -2.9887 1.8314 11 6 2.9731 -3.3282 3.2658 12 6 2.6144 -4.8117 3.3355 13 1 3.4677 -5.4052 3.0071 14 8 2.2682 -5.1946 4.6648 15 6 2.0021 -6.5938 4.8078 16 6 0.8062 -6.9850 3.9339 17 7 1.0367 -6.4914 2.5648 18 6 0.8979 -7.3142 1.4791 19 1 1.4788 -7.1334 0.5867 20 6 0.0106 -8.3806 1.5253 21 7 -0.8925 -8.4444 2.4807 22 14 0.0980 -9.7252 0.2315 23 1 1.0201 -10.7948 0.6907 24 1 -1.2562 -10.2966 0.0192 25 1 0.5995 -9.1531 -1.0439 26 6 1.4212 -5.0823 2.4104 27 1 0.5898 -4.4327 2.6845 28 6 1.8434 -4.7964 0.9679 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8900 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 4.3247 -3.5092 1.5932 33 1 3.5491 -1.9130 1.7418 34 1 3.7961 -3.1189 3.9491 35 1 2.1054 -2.7292 3.5417 36 1 2.8788 -7.1631 4.4986 37 1 1.7766 -6.8152 5.8510 38 1 0.7044 -8.0701 3.9186 39 1 -0.1026 -6.5384 4.3373 40 1 -1.5129 -9.1894 2.5128 41 1 2.6327 -5.4876 0.6719 42 1 0.9865 -4.9107 0.3042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163577.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:38 Heat of formation + Delta-G solvation = 32.526036 kcal Electronic energy + Delta-G solvation = -28219.729939 eV Core-core repulsion = 24328.869027 eV Total energy + Delta-G solvation = -3890.860912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18784 -40.18714 -38.65390 -36.28980 -34.81018 -33.56049 -32.02389 -31.52534 -30.14818 -28.76360 -27.23276 -26.99918 -25.31512 -24.11850 -22.85758 -22.00810 -21.19924 -19.82839 -19.21831 -18.80883 -17.51484 -16.99401 -16.21841 -16.04664 -15.53603 -15.33480 -15.15728 -14.78117 -14.41810 -14.14544 -13.86171 -13.82978 -13.29428 -13.23667 -13.18341 -12.94699 -12.80278 -12.65606 -12.61169 -12.08643 -11.80121 -11.47708 -11.13189 -11.08091 -10.98396 -10.74882 -10.50273 -10.37351 -10.28694 -10.17642 -10.10135 -9.88822 -9.80282 -9.66011 -9.10575 -8.61937 -8.61506 -6.80679 -5.91591 -3.39612 -0.39057 0.50106 1.25488 1.79549 2.54552 2.90658 3.30852 3.38572 3.39355 3.66435 4.10333 4.21857 4.34906 4.43454 4.62621 5.00322 5.06784 5.13078 5.24357 5.27539 5.34938 5.37134 5.48878 5.52290 5.62589 5.72762 5.78789 5.90245 5.99548 6.01522 6.12518 6.22152 6.31648 6.46143 6.50405 6.73327 7.02479 7.22624 7.42821 7.44114 7.63339 7.79698 7.93638 8.24873 9.01602 9.64491 10.22521 11.16339 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.003739 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.101934 B = 7487.263542 C = 8424.850259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.089 3.911 3 N -0.245 5.245 4 N -0.265 5.265 5 S 0.417 5.583 6 C -0.278 4.278 7 C 0.600 3.400 8 O -0.508 6.508 9 N -0.597 5.597 10 C 0.104 3.896 11 C -0.123 4.123 12 C 0.077 3.923 13 H 0.054 0.946 14 O -0.388 6.388 15 C 0.039 3.961 16 C 0.144 3.856 17 N -0.586 5.586 18 C -0.264 4.264 19 H 0.072 0.928 20 C 0.011 3.989 21 N -0.899 5.899 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.137 3.863 27 H 0.038 0.962 28 C 0.125 3.875 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 12.799 -0.252 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 N -0.112 5.112 4 N -0.245 5.245 5 S 0.554 5.446 6 C -0.419 4.419 7 C 0.383 3.617 8 O -0.383 6.383 9 N -0.330 5.330 10 C -0.020 4.020 11 C -0.162 4.162 12 C 0.017 3.983 13 H 0.072 0.928 14 O -0.308 6.308 15 C -0.039 4.039 16 C 0.018 3.982 17 N -0.311 5.311 18 C -0.393 4.393 19 H 0.090 0.910 20 C -0.189 4.189 21 N -0.542 5.542 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.202 1.202 26 C 0.029 3.971 27 H 0.056 0.944 28 C 0.005 3.995 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.696 13.709 -0.544 17.396 hybrid contribution -1.273 -1.506 -0.665 2.081 sum 9.422 12.203 -1.208 15.465 Atomic orbital electron populations 1.20505 0.83929 1.05265 1.04355 1.22852 1.00097 0.84934 0.97762 1.70592 0.96953 1.27924 1.15748 1.78802 1.09410 1.15968 1.20306 1.82656 1.09715 1.00834 1.51439 1.27785 0.98422 1.00265 1.15390 1.16516 0.81504 0.81900 0.81790 1.90872 1.32885 1.76818 1.37763 1.48173 1.38345 1.12806 1.33702 1.21943 0.90883 0.99874 0.89308 1.21823 1.02708 0.96483 0.95184 1.22424 0.97468 0.93707 0.84725 0.92760 1.87744 1.89919 1.25641 1.27453 1.23348 0.99399 0.80862 1.00265 1.21422 0.92649 1.01142 0.82978 1.43985 1.81242 1.03132 1.02700 1.19117 1.18052 1.07453 0.94646 0.91027 1.25117 0.95071 1.00652 0.98076 1.70007 1.18485 1.31329 1.34410 0.86264 0.77049 0.82006 0.81320 1.21305 1.21574 1.20178 1.21288 0.94720 0.89015 0.92095 0.94403 1.21917 1.01139 0.77653 0.98829 0.89284 0.89414 0.88476 0.89947 0.90854 0.89834 0.90680 0.94036 0.89990 0.88799 0.95282 0.93382 0.90211 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.22 36.00 0.37 -0.47 16 2 C 0.09 1.10 7.00 -82.85 -0.58 0.52 16 3 N -0.25 -3.18 11.54 33.42 0.39 -2.80 16 4 N -0.27 -3.23 12.51 60.35 0.75 -2.47 16 5 S 0.42 4.10 21.17 -107.50 -2.28 1.83 16 6 C -0.28 -3.48 5.58 -35.96 -0.20 -3.68 16 7 C 0.60 9.03 7.36 -12.63 -0.09 8.93 16 8 O -0.51 -9.35 15.60 5.26 0.08 -9.27 16 9 N -0.60 -8.63 2.98 -174.05 -0.52 -9.15 16 10 C 0.10 1.15 6.05 -3.66 -0.02 1.13 16 11 C -0.12 -1.56 5.82 -26.65 -0.16 -1.71 16 12 C 0.08 1.28 2.48 -26.64 -0.07 1.21 16 13 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 14 O -0.39 -7.18 10.49 -35.23 -0.37 -7.55 16 15 C 0.04 0.72 6.95 37.26 0.26 0.98 16 16 C 0.14 3.26 5.40 -3.47 -0.02 3.24 16 17 N -0.59 -13.75 3.03 -164.36 -0.50 -14.24 16 18 C -0.26 -6.70 8.84 -15.06 -0.13 -6.83 16 19 H 0.07 1.76 6.31 -52.49 -0.33 1.43 16 20 C 0.01 0.28 5.00 -17.43 -0.09 0.19 16 21 N -0.90 -24.90 11.20 55.49 0.62 -24.28 16 22 Si 0.90 20.79 29.58 -169.99 -5.03 15.76 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.14 2.70 3.03 -67.53 -0.20 2.49 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 C 0.13 2.24 4.49 -3.70 -0.02 2.22 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.13 7.10 -51.93 -0.37 0.76 16 32 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.07 0.69 4.41 -42.19 -0.19 0.50 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 2.33 6.30 -51.93 -0.33 2.00 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.08 1.40 7.36 -51.92 -0.38 1.02 16 42 H 0.11 2.21 6.83 -51.93 -0.35 1.86 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -30.55 345.66 -7.90 -38.45 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.31 Total: 0.28 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -0.95 Total: 8.23 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.74 Total: -52.94 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.29 Total: -16.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -2.28 Total: 1.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.55 -7.90 -38.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163577.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.972 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds