Wall clock time and date at job start Tue Mar 31 2020 20:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31242 * 124.05469 * 2 1 4 4 N 1.27340 * 120.03690 * 180.36290 * 3 2 1 5 5 S 1.56634 * 109.73797 * 359.69675 * 4 3 2 6 6 C 1.38241 * 124.05427 * 179.81185 * 2 1 3 7 7 C 1.47167 * 128.47756 * 359.97438 * 6 2 1 8 8 O 1.21620 * 120.00181 * 9.59134 * 7 6 2 9 9 N 1.34781 * 120.00471 * 189.58716 * 7 6 2 10 10 C 1.46988 * 120.71581 * 10.85645 * 9 7 6 11 11 C 1.53160 * 108.43738 * 125.43170 * 10 9 7 12 12 C 1.52511 * 109.79321 * 54.53226 * 11 10 9 13 13 H 1.09001 * 108.93519 * 180.32157 * 12 11 10 14 14 O 1.42699 * 110.61747 * 61.28424 * 12 11 10 15 15 C 1.43076 * 113.86674 * 174.65007 * 14 12 11 16 16 C 1.52810 * 109.52342 * 61.51525 * 15 14 12 17 17 N 1.47178 * 108.91834 * 308.65565 * 16 15 14 18 18 C 1.36936 * 121.22151 * 230.90568 * 17 16 15 19 19 H 1.07997 * 120.00319 * 156.41187 * 18 17 16 20 20 C 1.38818 * 120.00198 * 336.42131 * 18 17 16 21 21 N 1.31626 * 119.99812 * 340.57145 * 20 18 17 22 22 Si 1.86795 * 120.00271 * 160.56994 * 20 18 17 23 23 H 1.48502 * 109.47131 * 89.99742 * 22 20 18 24 24 H 1.48500 * 109.47400 * 209.99845 * 22 20 18 25 25 H 1.48500 * 109.47178 * 330.00395 * 22 20 18 26 26 C 1.47586 * 117.55353 * 50.64073 * 17 16 15 27 27 H 1.09008 * 110.31402 * 187.95272 * 26 17 16 28 28 C 1.47222 * 119.88400 * 190.21194 * 9 7 6 29 29 H 1.09000 * 109.47237 * 270.18780 * 1 2 3 30 30 H 1.08996 * 109.46849 * 30.18444 * 1 2 3 31 31 H 1.08998 * 109.47152 * 150.18347 * 1 2 3 32 32 H 1.08998 * 109.64191 * 5.74816 * 10 9 7 33 33 H 1.09003 * 109.81804 * 245.22124 * 10 9 7 34 34 H 1.08996 * 109.41916 * 294.43390 * 11 10 9 35 35 H 1.09000 * 109.41712 * 174.63114 * 11 10 9 36 36 H 1.09003 * 109.47747 * 181.64293 * 15 14 12 37 37 H 1.09000 * 109.47752 * 301.64822 * 15 14 12 38 38 H 1.08998 * 109.53147 * 188.79958 * 16 15 14 39 39 H 1.08997 * 109.44029 * 68.45643 * 16 15 14 40 40 H 0.96995 * 119.99891 * 179.97438 * 21 20 18 41 41 H 1.09002 * 108.76018 * 113.95837 * 28 9 7 42 42 H 1.08995 * 110.51553 * 353.63974 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0070 5 16 3.9366 -0.5096 -0.0068 6 6 2.2812 -1.1453 0.0038 7 6 1.8394 -2.5491 0.0089 8 8 0.6662 -2.8181 -0.1652 9 7 2.7350 -3.5368 0.2064 10 6 4.1025 -3.2324 0.6512 11 6 4.3914 -4.0428 1.9183 12 6 4.1329 -5.5227 1.6550 13 1 4.3371 -6.0850 2.5662 14 8 4.9930 -6.0075 0.6247 15 6 4.8943 -7.4176 0.4040 16 6 3.4728 -7.7677 -0.0340 17 7 2.5205 -7.1809 0.9226 18 6 1.5321 -7.9367 1.4944 19 1 1.0987 -7.6355 2.4366 20 6 1.0873 -9.0902 0.8631 21 7 1.3117 -9.2655 -0.4220 22 14 0.1703 -10.3938 1.8373 23 1 -1.2864 -10.1081 1.7975 24 1 0.4292 -11.7297 1.2426 25 1 0.6391 -10.3799 3.2463 26 6 2.6738 -5.7494 1.2474 27 1 2.0059 -5.4729 2.0633 28 6 2.3408 -4.9386 -0.0104 29 1 -0.3634 0.0034 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8916 -0.5110 32 1 4.1884 -2.1680 0.8695 33 1 4.8139 -3.5051 -0.1284 34 1 3.7426 -3.6994 2.7239 35 1 5.4327 -3.9029 2.2084 36 1 5.5988 -7.7141 -0.3731 37 1 5.1280 -7.9473 1.3276 38 1 3.3531 -8.8510 -0.0511 39 1 3.2892 -7.3614 -1.0286 40 1 1.0012 -10.0716 -0.8630 41 1 2.9018 -5.3335 -0.8574 42 1 1.2726 -5.0076 -0.2160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:42 Heat of formation + Delta-G solvation = 38.288551 kcal Electronic energy + Delta-G solvation = -28282.110313 eV Core-core repulsion = 24391.499282 eV Total energy + Delta-G solvation = -3890.611031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05361 -40.20165 -38.65134 -36.00230 -34.77115 -33.42194 -32.04196 -31.64324 -29.88125 -28.72351 -27.36382 -27.03588 -25.08154 -24.12114 -23.04532 -22.17324 -21.54855 -19.58648 -18.86233 -18.49957 -17.20400 -16.99436 -16.28967 -15.99942 -15.64862 -15.33543 -15.11013 -14.61486 -14.54462 -14.25735 -13.95463 -13.76370 -13.34885 -13.16480 -13.11343 -12.86890 -12.68256 -12.56573 -12.41182 -12.21955 -11.68791 -11.52662 -11.23761 -11.17149 -10.87166 -10.74506 -10.40144 -10.34177 -10.18868 -10.06698 -9.94064 -9.83625 -9.78928 -9.57445 -9.13587 -8.71456 -8.43798 -6.89878 -5.94430 -3.34977 -0.38456 0.65973 1.33310 1.83977 2.85757 2.98438 3.30189 3.37847 3.39436 3.77103 4.17849 4.27491 4.35051 4.47553 4.67572 4.91031 5.14509 5.16264 5.20765 5.25787 5.43166 5.46777 5.56384 5.60231 5.61500 5.81260 5.90385 5.93150 6.04065 6.04631 6.15479 6.24261 6.31231 6.43183 6.58985 6.72951 6.98626 7.35812 7.39084 7.55361 7.63253 7.77096 8.04899 8.20398 8.99874 9.62300 10.17342 11.13308 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.003562 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.206405 B = 7859.014792 C = 8901.435430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.096 3.904 3 N -0.252 5.252 4 N -0.282 5.282 5 S 0.429 5.571 6 C -0.289 4.289 7 C 0.595 3.405 8 O -0.513 6.513 9 N -0.599 5.599 10 C 0.113 3.887 11 C -0.120 4.120 12 C 0.082 3.918 13 H 0.057 0.943 14 O -0.388 6.388 15 C 0.040 3.960 16 C 0.134 3.866 17 N -0.583 5.583 18 C -0.257 4.257 19 H 0.071 0.929 20 C 0.006 3.994 21 N -0.899 5.899 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.133 3.867 27 H 0.076 0.924 28 C 0.110 3.890 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.099 0.901 39 H 0.028 0.972 40 H 0.256 0.744 41 H 0.073 0.927 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 13.367 1.778 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 N -0.119 5.119 4 N -0.261 5.261 5 S 0.567 5.433 6 C -0.430 4.430 7 C 0.380 3.620 8 O -0.390 6.390 9 N -0.333 5.333 10 C -0.012 4.012 11 C -0.159 4.159 12 C 0.022 3.978 13 H 0.075 0.925 14 O -0.308 6.308 15 C -0.038 4.038 16 C 0.009 3.991 17 N -0.306 5.306 18 C -0.386 4.386 19 H 0.089 0.911 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.734 3.266 23 H -0.212 1.212 24 H -0.214 1.214 25 H -0.204 1.204 26 C 0.024 3.976 27 H 0.095 0.905 28 C -0.013 4.013 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.622 14.313 1.446 16.772 hybrid contribution -1.800 -1.463 0.511 2.375 sum 6.823 12.850 1.957 14.680 Atomic orbital electron populations 1.20552 0.83851 1.05182 1.04293 1.22958 1.00199 0.85351 0.96567 1.70737 0.97150 1.28102 1.15897 1.78651 1.09401 1.19027 1.19000 1.82858 1.10067 0.98978 1.51432 1.27898 0.97834 1.00371 1.16879 1.16575 0.85702 0.81789 0.77962 1.90813 1.15992 1.82349 1.49831 1.48303 1.11316 1.07720 1.65931 1.21962 0.83847 0.97086 0.98342 1.21796 1.02888 0.94302 0.96935 1.22218 0.91671 0.92910 0.91007 0.92493 1.87712 1.62458 1.23957 1.56636 1.23264 1.00070 0.80571 0.99858 1.21440 0.84989 1.01231 0.91456 1.44330 1.32943 1.01997 1.51287 1.19174 1.13968 1.04208 1.01242 0.91146 1.24977 0.98853 1.00480 0.95020 1.70040 1.49228 1.27348 1.07603 0.86270 0.79638 0.81190 0.79535 1.21227 1.21449 1.20434 1.21603 0.94109 0.86291 0.95592 0.90542 1.22589 1.02577 0.75707 1.00406 0.89476 0.89988 0.87727 0.92047 0.89062 0.90124 0.89702 0.89956 0.94003 0.88273 0.95359 0.93383 0.90845 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.00 36.01 0.36 -0.50 16 2 C 0.10 1.24 7.00 -82.84 -0.58 0.66 16 3 N -0.25 -3.44 11.54 33.42 0.39 -3.05 16 4 N -0.28 -3.63 12.51 60.35 0.75 -2.87 16 5 S 0.43 4.49 19.47 -107.50 -2.09 2.40 16 6 C -0.29 -3.80 6.44 -35.96 -0.23 -4.03 16 7 C 0.60 9.27 7.62 -12.63 -0.10 9.18 16 8 O -0.51 -9.50 14.29 5.26 0.08 -9.42 16 9 N -0.60 -9.01 2.98 -173.79 -0.52 -9.53 16 10 C 0.11 1.33 5.55 -3.69 -0.02 1.30 16 11 C -0.12 -1.42 5.82 -26.90 -0.16 -1.58 16 12 C 0.08 1.29 2.73 -26.88 -0.07 1.22 16 13 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 14 O -0.39 -6.49 9.68 -35.23 -0.34 -6.83 16 15 C 0.04 0.70 6.96 37.06 0.26 0.96 16 16 C 0.13 2.92 4.98 -3.77 -0.02 2.90 16 17 N -0.58 -13.36 2.72 -164.12 -0.45 -13.81 16 18 C -0.26 -6.60 9.70 -15.06 -0.15 -6.75 16 19 H 0.07 1.79 7.90 -52.49 -0.41 1.38 16 20 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 21 N -0.90 -24.54 11.11 55.49 0.62 -23.92 16 22 Si 0.90 20.73 29.60 -169.99 -5.03 15.70 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.13 2.53 2.95 -67.08 -0.20 2.33 16 27 H 0.08 1.50 7.99 -51.92 -0.42 1.09 16 28 C 0.11 2.03 5.68 -3.49 -0.02 2.01 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.29 6.32 -51.93 -0.33 0.96 16 32 H 0.06 0.61 3.33 -20.69 -0.07 0.54 16 33 H 0.09 1.03 7.95 -51.93 -0.41 0.62 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.74 8.13 -51.93 -0.42 0.31 16 38 H 0.10 2.42 6.01 -51.93 -0.31 2.10 16 39 H 0.03 0.65 7.21 -51.93 -0.37 0.28 16 40 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.07 1.44 6.69 -51.93 -0.35 1.09 16 42 H 0.10 2.08 7.02 -51.93 -0.36 1.72 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -29.65 341.26 -7.59 -37.24 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.13 Total: 1.17 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.01 Total: 7.78 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.79 Total: -53.18 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.27 Total: -16.25 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -2.09 Total: 2.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.65 -7.59 -37.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.533 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds