Wall clock time and date at job start Tue Mar 31 2020 20:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31242 * 124.05469 * 2 1 4 4 N 1.27340 * 120.03690 * 180.36290 * 3 2 1 5 5 S 1.56634 * 109.73797 * 359.69675 * 4 3 2 6 6 C 1.38241 * 124.05427 * 179.81185 * 2 1 3 7 7 C 1.47167 * 128.47756 * 359.97438 * 6 2 1 8 8 O 1.21620 * 120.00181 * 9.59134 * 7 6 2 9 9 N 1.34781 * 120.00471 * 189.58716 * 7 6 2 10 10 C 1.46988 * 120.71581 * 10.85645 * 9 7 6 11 11 C 1.53160 * 108.43738 * 125.43170 * 10 9 7 12 12 C 1.52511 * 109.79321 * 54.53226 * 11 10 9 13 13 H 1.09001 * 108.93519 * 180.32157 * 12 11 10 14 14 O 1.42699 * 110.61747 * 61.28424 * 12 11 10 15 15 C 1.43076 * 113.86674 * 174.65007 * 14 12 11 16 16 C 1.52810 * 109.52342 * 61.51525 * 15 14 12 17 17 N 1.47178 * 108.91834 * 308.65565 * 16 15 14 18 18 C 1.36936 * 121.22151 * 230.90568 * 17 16 15 19 19 H 1.07997 * 120.00319 * 156.41187 * 18 17 16 20 20 C 1.38818 * 120.00198 * 336.42131 * 18 17 16 21 21 N 1.31626 * 119.99812 * 340.57145 * 20 18 17 22 22 Si 1.86795 * 120.00271 * 160.56994 * 20 18 17 23 23 H 1.48502 * 109.47131 * 89.99742 * 22 20 18 24 24 H 1.48500 * 109.47400 * 209.99845 * 22 20 18 25 25 H 1.48500 * 109.47178 * 330.00395 * 22 20 18 26 26 C 1.47586 * 117.55353 * 50.64073 * 17 16 15 27 27 H 1.09008 * 110.31402 * 187.95272 * 26 17 16 28 28 C 1.47222 * 119.88400 * 190.21194 * 9 7 6 29 29 H 1.09000 * 109.47237 * 270.18780 * 1 2 3 30 30 H 1.08996 * 109.46849 * 30.18444 * 1 2 3 31 31 H 1.08998 * 109.47152 * 150.18347 * 1 2 3 32 32 H 1.08998 * 109.64191 * 5.74816 * 10 9 7 33 33 H 1.09003 * 109.81804 * 245.22124 * 10 9 7 34 34 H 1.08996 * 109.41916 * 294.43390 * 11 10 9 35 35 H 1.09000 * 109.41712 * 174.63114 * 11 10 9 36 36 H 1.09003 * 109.47747 * 181.64293 * 15 14 12 37 37 H 1.09000 * 109.47752 * 301.64822 * 15 14 12 38 38 H 1.08998 * 109.53147 * 188.79958 * 16 15 14 39 39 H 1.08997 * 109.44029 * 68.45643 * 16 15 14 40 40 H 0.96995 * 119.99891 * 179.97438 * 21 20 18 41 41 H 1.09002 * 108.76018 * 113.95837 * 28 9 7 42 42 H 1.08995 * 110.51553 * 353.63974 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0070 5 16 3.9366 -0.5096 -0.0068 6 6 2.2812 -1.1453 0.0038 7 6 1.8394 -2.5491 0.0089 8 8 0.6662 -2.8181 -0.1652 9 7 2.7350 -3.5368 0.2064 10 6 4.1025 -3.2324 0.6512 11 6 4.3914 -4.0428 1.9183 12 6 4.1329 -5.5227 1.6550 13 1 4.3371 -6.0850 2.5662 14 8 4.9930 -6.0075 0.6247 15 6 4.8943 -7.4176 0.4040 16 6 3.4728 -7.7677 -0.0340 17 7 2.5205 -7.1809 0.9226 18 6 1.5321 -7.9367 1.4944 19 1 1.0987 -7.6355 2.4366 20 6 1.0873 -9.0902 0.8631 21 7 1.3117 -9.2655 -0.4220 22 14 0.1703 -10.3938 1.8373 23 1 -1.2864 -10.1081 1.7975 24 1 0.4292 -11.7297 1.2426 25 1 0.6391 -10.3799 3.2463 26 6 2.6738 -5.7494 1.2474 27 1 2.0059 -5.4729 2.0633 28 6 2.3408 -4.9386 -0.0104 29 1 -0.3634 0.0034 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8916 -0.5110 32 1 4.1884 -2.1680 0.8695 33 1 4.8139 -3.5051 -0.1284 34 1 3.7426 -3.6994 2.7239 35 1 5.4327 -3.9029 2.2084 36 1 5.5988 -7.7141 -0.3731 37 1 5.1280 -7.9473 1.3276 38 1 3.3531 -8.8510 -0.0511 39 1 3.2892 -7.3614 -1.0286 40 1 1.0012 -10.0716 -0.8630 41 1 2.9018 -5.3335 -0.8574 42 1 1.2726 -5.0076 -0.2160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074163578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:42 Heat of formation + Delta-G solvation = 18.091268 kcal Electronic energy + Delta-G solvation = -28282.986133 eV Core-core repulsion = 24391.499282 eV Total energy + Delta-G solvation = -3891.486851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08728 -41.47660 -40.01702 -37.30633 -36.44798 -34.44535 -33.52460 -33.17664 -31.31748 -29.95267 -28.90427 -28.02503 -26.32843 -25.73970 -24.53791 -23.33004 -22.93592 -20.89076 -19.90218 -19.77429 -18.89018 -18.27330 -17.37663 -17.27596 -17.03266 -16.94618 -16.41010 -16.17538 -15.80636 -15.59112 -15.28193 -14.99966 -14.85752 -14.36443 -14.20101 -14.10599 -13.99416 -13.84071 -13.60559 -13.40446 -13.08835 -12.85517 -12.66158 -12.61129 -12.49482 -12.32113 -12.13947 -11.87317 -11.82571 -11.29236 -11.25554 -11.04354 -10.85421 -10.76451 -10.57614 -10.48836 -9.83675 -8.74195 -7.92053 -5.34883 -1.38880 -0.30168 0.37481 0.81834 1.45478 1.47699 1.56180 1.65835 1.78538 2.47443 2.78999 2.88362 3.19717 3.23769 3.41288 3.51267 3.76326 3.80167 4.07365 4.10452 4.23084 4.24945 4.35522 4.43494 4.55809 4.61678 4.64334 4.70204 4.75177 4.79408 4.89467 4.96090 5.01947 5.16625 5.19667 5.29235 5.31929 5.57428 5.63724 6.15013 6.25747 6.36413 6.57541 6.82612 7.05730 7.73351 8.25329 9.12961 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.003562 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.206405 B = 7859.014792 C = 8901.435430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.098 3.902 3 N -0.272 5.272 4 N -0.300 5.300 5 S 0.522 5.478 6 C -0.320 4.320 7 C 0.596 3.404 8 O -0.552 6.552 9 N -0.598 5.598 10 C 0.111 3.889 11 C -0.115 4.115 12 C 0.087 3.913 13 H 0.056 0.944 14 O -0.381 6.381 15 C 0.053 3.947 16 C 0.141 3.859 17 N -0.601 5.601 18 C -0.265 4.265 19 H 0.068 0.932 20 C -0.043 4.043 21 N -0.928 5.928 22 Si 0.964 3.036 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.129 3.871 27 H 0.065 0.935 28 C 0.129 3.871 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.005 0.995 40 H 0.251 0.749 41 H 0.061 0.939 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 15.085 3.010 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.137 5.137 4 N -0.280 5.280 5 S 0.660 5.340 6 C -0.460 4.460 7 C 0.383 3.617 8 O -0.432 6.432 9 N -0.331 5.331 10 C -0.013 4.013 11 C -0.153 4.153 12 C 0.027 3.973 13 H 0.074 0.926 14 O -0.300 6.300 15 C -0.025 4.025 16 C 0.015 3.985 17 N -0.324 5.324 18 C -0.394 4.394 19 H 0.085 0.915 20 C -0.239 4.239 21 N -0.574 5.574 22 Si 0.792 3.208 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.195 1.195 26 C 0.021 3.979 27 H 0.083 0.917 28 C 0.005 3.995 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.023 0.977 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.122 16.084 2.701 19.740 hybrid contribution -2.521 -1.922 0.119 3.173 sum 8.601 14.161 2.820 16.807 Atomic orbital electron populations 1.20579 0.83134 1.05138 1.04989 1.23200 1.00949 0.85233 0.95562 1.70813 0.97343 1.28300 1.17241 1.78439 1.09439 1.20929 1.19168 1.82389 1.06722 0.96539 1.48352 1.27622 1.00363 0.98897 1.19112 1.16816 0.85153 0.82766 0.76999 1.90795 1.17765 1.83216 1.51384 1.48233 1.12799 1.06089 1.66007 1.22230 0.81876 0.98382 0.98857 1.21860 1.05597 0.90725 0.97107 1.22233 0.88776 0.95854 0.90423 0.92585 1.87729 1.62077 1.23199 1.56946 1.23084 0.97369 0.81242 1.00768 1.21283 0.87550 0.99204 0.90442 1.44529 1.32797 1.03775 1.51307 1.19447 1.14087 1.04714 1.01200 0.91456 1.25644 1.00265 1.02259 0.95752 1.70180 1.50808 1.27544 1.08863 0.85340 0.78104 0.78706 0.78656 1.21658 1.21650 1.19455 1.21771 0.96651 0.84266 0.95187 0.91684 1.21996 0.99921 0.77988 0.99630 0.88390 0.88220 0.89446 0.89955 0.87723 0.88947 0.85857 0.87217 0.93623 0.91283 0.97740 0.93937 0.92107 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.00 71.24 0.71 -0.97 16 2 C 0.10 2.42 7.00 42.65 0.30 2.72 16 3 N -0.27 -6.88 11.54 -48.18 -0.56 -7.44 16 4 N -0.30 -6.89 12.51 37.02 0.46 -6.43 16 5 S 0.52 9.13 19.47 -56.49 -1.10 8.03 16 6 C -0.32 -7.89 6.44 24.62 0.16 -7.73 16 7 C 0.60 18.43 7.62 86.59 0.66 19.09 16 8 O -0.55 -21.22 14.29 -4.09 -0.06 -21.28 16 9 N -0.60 -17.47 2.98 -822.00 -2.45 -19.92 16 10 C 0.11 2.21 5.55 86.34 0.48 2.69 16 11 C -0.11 -2.24 5.82 30.49 0.18 -2.06 16 12 C 0.09 2.55 2.73 30.50 0.08 2.64 16 13 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 14 O -0.38 -11.72 9.68 -148.98 -1.44 -13.17 16 15 C 0.05 1.79 6.96 71.92 0.50 2.29 16 16 C 0.14 6.26 4.98 86.19 0.43 6.69 16 17 N -0.60 -28.26 2.72 -673.16 -1.83 -30.09 16 18 C -0.26 -13.99 9.70 84.03 0.82 -13.18 16 19 H 0.07 3.51 7.90 -2.91 -0.02 3.49 16 20 C -0.04 -2.32 4.92 84.86 0.42 -1.90 16 21 N -0.93 -52.76 11.11 21.65 0.24 -52.52 16 22 Si 0.96 43.63 29.60 68.60 2.03 45.66 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 C 0.13 4.95 2.95 44.95 0.13 5.08 16 27 H 0.06 2.61 7.99 -2.38 -0.02 2.59 16 28 C 0.13 4.89 5.68 86.35 0.49 5.38 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.21 6.32 -2.39 -0.02 2.20 16 32 H 0.08 1.27 3.33 -22.25 -0.07 1.20 16 33 H 0.10 1.91 7.95 -2.39 -0.02 1.89 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 38 H 0.07 3.50 6.01 -2.39 -0.01 3.48 16 39 H 0.00 0.22 7.21 -2.39 -0.02 0.20 16 40 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.06 2.45 6.69 -2.39 -0.02 2.43 16 42 H 0.06 2.65 7.02 -2.39 -0.02 2.63 16 Total: -1.00 -67.60 341.26 1.65 -65.95 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.00 Total: 10.47 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 5.35 Total: 20.73 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -4.13 Total: -116.39 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.50 Total: -34.45 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 9.13 SS G_CDS: -1.10 Total: 8.03 kcal Total: -67.60 1.65 -65.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.039 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds