Wall clock time and date at job start Tue Mar 31 2020 20:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31242 * 124.05829 * 2 1 4 4 N 1.27338 * 120.03589 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.74093 * 359.69503 * 4 3 2 6 6 C 1.38247 * 124.05145 * 179.97438 * 2 1 3 7 7 C 1.47176 * 128.47882 * 0.03017 * 6 2 1 8 8 O 1.21615 * 119.99633 * 311.39732 * 7 6 2 9 9 N 1.34780 * 119.99906 * 131.39287 * 7 6 2 10 10 C 1.46839 * 120.40972 * 4.42909 * 9 7 6 11 11 C 1.53372 * 109.24571 * 232.22937 * 10 9 7 12 12 C 1.52785 * 108.81680 * 306.16449 * 11 10 9 13 13 H 1.09004 * 108.96361 * 303.07159 * 12 11 10 14 14 O 1.42597 * 111.11460 * 182.53308 * 12 11 10 15 15 C 1.43150 * 113.63640 * 176.38924 * 14 12 11 16 16 C 1.53189 * 109.69685 * 61.71102 * 15 14 12 17 17 N 1.47332 * 108.81301 * 308.71219 * 16 15 14 18 18 C 1.36939 * 121.34630 * 230.30774 * 17 16 15 19 19 H 1.08002 * 119.99852 * 151.90092 * 18 17 16 20 20 C 1.38806 * 120.00288 * 331.89670 * 18 17 16 21 21 N 1.31620 * 119.99813 * 345.28316 * 20 18 17 22 22 Si 1.86801 * 120.00451 * 165.27653 * 20 18 17 23 23 H 1.48504 * 109.46599 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46742 * 120.00084 * 22 20 18 25 25 H 1.48496 * 109.47300 * 240.00523 * 22 20 18 26 26 C 1.46876 * 117.35076 * 50.32640 * 17 16 15 27 27 H 1.09002 * 109.64952 * 67.61404 * 26 17 16 28 28 C 1.47124 * 120.40791 * 184.40627 * 9 7 6 29 29 H 1.08996 * 109.47386 * 270.03014 * 1 2 3 30 30 H 1.09007 * 109.46491 * 30.03327 * 1 2 3 31 31 H 1.08993 * 109.47311 * 150.02564 * 1 2 3 32 32 H 1.09001 * 109.51252 * 352.15481 * 10 9 7 33 33 H 1.08993 * 109.51076 * 112.30160 * 10 9 7 34 34 H 1.08999 * 109.57846 * 186.36337 * 11 10 9 35 35 H 1.09003 * 109.57750 * 65.96459 * 11 10 9 36 36 H 1.09002 * 109.42745 * 181.76458 * 15 14 12 37 37 H 1.09000 * 109.42298 * 301.65838 * 15 14 12 38 38 H 1.09002 * 109.58326 * 68.56065 * 16 15 14 39 39 H 1.08999 * 109.58631 * 188.97054 * 16 15 14 40 40 H 0.97003 * 119.99865 * 179.97438 * 21 20 18 41 41 H 1.09003 * 109.72792 * 7.12791 * 28 9 7 42 42 H 1.09001 * 109.72594 * 246.45518 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9366 -0.5098 0.0089 6 6 2.2811 -1.1454 0.0005 7 6 1.8393 -2.5493 0.0005 8 8 0.9920 -2.9201 0.7903 9 7 2.3736 -3.4239 -0.8748 10 6 3.4648 -3.0106 -1.7662 11 6 3.0959 -3.3611 -3.2130 12 6 2.7338 -4.8437 -3.2840 13 1 3.5732 -5.4315 -2.9123 14 8 2.4379 -5.2367 -4.6224 15 6 2.1707 -6.6359 -4.7639 16 6 0.9393 -7.0129 -3.9344 17 7 1.1192 -6.5099 -2.5613 18 6 0.9346 -7.3228 -1.4749 19 1 1.4727 -7.1299 -0.5585 20 6 0.0560 -8.3947 -1.5513 21 7 -0.8077 -8.4683 -2.5418 22 14 0.0994 -9.7329 -0.2487 23 1 1.1527 -9.4177 0.7496 24 1 -1.2193 -9.8058 0.4300 25 1 0.3992 -11.0383 -0.8899 26 6 1.5041 -5.1012 -2.4038 27 1 0.6834 -4.4591 -2.7234 28 6 1.8710 -4.8047 -0.9485 29 1 -0.3634 0.0005 1.0276 30 1 -0.3632 0.8898 -0.5144 31 1 -0.3633 -0.8901 -0.5134 32 1 3.6177 -1.9348 -1.6800 33 1 4.3801 -3.5326 -1.4873 34 1 3.9458 -3.1610 -3.8654 35 1 2.2420 -2.7610 -3.5278 36 1 1.9850 -6.8653 -5.8132 37 1 3.0314 -7.2064 -4.4149 38 1 0.0499 -6.5629 -4.3755 39 1 0.8305 -8.0973 -3.9138 40 1 -1.4214 -9.2175 -2.5954 41 1 0.9880 -4.9090 -0.3179 42 1 2.6451 -5.4963 -0.6160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:46 Heat of formation + Delta-G solvation = 33.288960 kcal Electronic energy + Delta-G solvation = -28216.644685 eV Core-core repulsion = 24325.816856 eV Total energy + Delta-G solvation = -3890.827829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18521 -40.18985 -38.65307 -36.28824 -34.81467 -33.56556 -32.02408 -31.52715 -30.14811 -28.76122 -27.23743 -27.00231 -25.31889 -24.12282 -22.86135 -22.00777 -21.19528 -19.82570 -19.21566 -18.81697 -17.50256 -16.99370 -16.23532 -16.05973 -15.54030 -15.32608 -15.15148 -14.78499 -14.41972 -14.15051 -13.85715 -13.82308 -13.28979 -13.23472 -13.17643 -12.93959 -12.81363 -12.64748 -12.64107 -12.08897 -11.81354 -11.47664 -11.14111 -11.08543 -10.99499 -10.73550 -10.49397 -10.37269 -10.28021 -10.19321 -10.09351 -9.88662 -9.79594 -9.65643 -9.10989 -8.62742 -8.60953 -6.81330 -5.91618 -3.38654 -0.39665 0.50426 1.25238 1.79135 2.55465 2.90741 3.30262 3.38866 3.40072 3.65689 4.10548 4.21980 4.34864 4.43268 4.62612 5.00225 5.06446 5.12904 5.24187 5.27618 5.34909 5.39432 5.46210 5.52412 5.62402 5.72239 5.78882 5.87492 5.99628 6.01511 6.12469 6.22152 6.31391 6.46206 6.49993 6.73010 7.02863 7.22574 7.42907 7.43978 7.63411 7.79829 7.93775 8.24398 9.01564 9.64694 10.22304 11.16353 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.003738 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.761870 B = 7488.739275 C = 8438.240534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.089 3.911 3 N -0.245 5.245 4 N -0.266 5.266 5 S 0.418 5.582 6 C -0.278 4.278 7 C 0.599 3.401 8 O -0.507 6.507 9 N -0.597 5.597 10 C 0.104 3.896 11 C -0.124 4.124 12 C 0.077 3.923 13 H 0.054 0.946 14 O -0.388 6.388 15 C 0.039 3.961 16 C 0.143 3.857 17 N -0.587 5.587 18 C -0.262 4.262 19 H 0.073 0.927 20 C 0.010 3.990 21 N -0.899 5.899 22 Si 0.904 3.096 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.136 3.864 27 H 0.039 0.961 28 C 0.126 3.874 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.029 0.971 39 H 0.095 0.905 40 H 0.255 0.745 41 H 0.107 0.893 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.708 12.833 0.588 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 N -0.112 5.112 4 N -0.245 5.245 5 S 0.554 5.446 6 C -0.419 4.419 7 C 0.382 3.618 8 O -0.382 6.382 9 N -0.331 5.331 10 C -0.020 4.020 11 C -0.162 4.162 12 C 0.017 3.983 13 H 0.072 0.928 14 O -0.307 6.307 15 C -0.039 4.039 16 C 0.017 3.983 17 N -0.312 5.312 18 C -0.391 4.391 19 H 0.090 0.910 20 C -0.190 4.190 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.215 1.215 26 C 0.028 3.972 27 H 0.056 0.944 28 C 0.005 3.995 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.739 13.746 0.869 17.465 hybrid contribution -1.310 -1.516 0.674 2.114 sum 9.429 12.229 1.543 15.519 Atomic orbital electron populations 1.20414 0.83869 1.04475 1.04569 1.22862 1.00104 0.84965 0.97716 1.70594 0.96953 1.27898 1.15782 1.78799 1.09411 1.16043 1.20265 1.82652 1.09730 1.00797 1.51409 1.27802 0.98386 1.00250 1.15487 1.16517 0.81815 0.81892 0.81586 1.90877 1.31689 1.77315 1.38307 1.48169 1.35923 1.12669 1.36333 1.21955 0.90158 0.99944 0.89967 1.21833 1.02846 0.96498 0.95064 1.22411 0.97656 0.93669 0.84588 0.92760 1.87746 1.90828 1.25655 1.26487 1.23350 0.99398 0.80848 1.00283 1.21435 0.92446 1.01217 0.83155 1.44015 1.81238 1.03403 1.02501 1.19158 1.19473 1.07443 0.93057 0.90963 1.25093 0.95270 1.00678 0.97967 1.70019 1.20390 1.31064 1.32787 0.86208 0.77646 0.81774 0.81076 1.20087 1.21494 1.21461 1.21304 0.94615 0.89039 0.92217 0.94353 1.21903 1.01314 0.77715 0.98538 0.88925 0.89555 0.89355 0.90850 0.89932 0.89826 0.90689 0.89979 0.94020 0.95306 0.88680 0.93448 0.87477 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.13 36.01 0.36 -0.40 16 2 C 0.09 1.10 7.00 -82.84 -0.58 0.52 16 3 N -0.25 -3.18 11.54 33.42 0.39 -2.79 16 4 N -0.27 -3.23 12.51 60.35 0.75 -2.47 16 5 S 0.42 4.10 21.05 -107.50 -2.26 1.84 16 6 C -0.28 -3.48 5.64 -35.95 -0.20 -3.69 16 7 C 0.60 9.00 7.21 -12.63 -0.09 8.91 16 8 O -0.51 -9.32 16.42 5.26 0.09 -9.24 16 9 N -0.60 -8.63 2.98 -174.06 -0.52 -9.15 16 10 C 0.10 1.15 6.04 -3.67 -0.02 1.13 16 11 C -0.12 -1.56 5.82 -26.65 -0.16 -1.72 16 12 C 0.08 1.28 2.47 -26.63 -0.07 1.21 16 13 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 14 O -0.39 -7.17 10.49 -35.23 -0.37 -7.54 16 15 C 0.04 0.72 6.96 37.26 0.26 0.98 16 16 C 0.14 3.24 5.41 -3.49 -0.02 3.23 16 17 N -0.59 -13.77 3.04 -164.37 -0.50 -14.27 16 18 C -0.26 -6.66 8.86 -15.06 -0.13 -6.80 16 19 H 0.07 1.78 6.29 -52.49 -0.33 1.45 16 20 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16 21 N -0.90 -24.90 11.17 55.49 0.62 -24.28 16 22 Si 0.90 20.79 29.58 -169.99 -5.03 15.76 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.14 2.68 3.02 -67.53 -0.20 2.48 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 C 0.13 2.25 4.48 -3.71 -0.02 2.23 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 32 H 0.07 0.69 4.30 -39.21 -0.17 0.52 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 2.36 6.26 -51.93 -0.32 2.04 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.11 2.20 6.83 -51.93 -0.35 1.85 16 42 H 0.08 1.41 7.37 -51.93 -0.38 1.03 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -30.60 346.81 -7.89 -38.49 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.33 Total: 0.17 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -0.95 Total: 8.26 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.74 Total: -52.96 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.28 Total: -16.78 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -2.26 Total: 1.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.60 -7.89 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.781 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds