Wall clock time and date at job start Tue Mar 31 2020 20:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31246 * 124.05406 * 2 1 4 4 N 1.27334 * 120.03479 * 180.33627 * 3 2 1 5 5 S 1.56638 * 109.74353 * 359.71443 * 4 3 2 6 6 C 1.38245 * 124.05810 * 179.82451 * 2 1 3 7 7 C 1.47172 * 128.47633 * 0.02562 * 6 2 1 8 8 O 1.21628 * 119.99566 * 350.33406 * 7 6 2 9 9 N 1.34768 * 120.00012 * 170.33215 * 7 6 2 10 10 C 1.46986 * 120.72497 * 349.15216 * 9 7 6 11 11 C 1.53155 * 108.44016 * 234.56843 * 10 9 7 12 12 C 1.52505 * 109.79879 * 305.46622 * 11 10 9 13 13 H 1.08995 * 108.93891 * 179.01007 * 12 11 10 14 14 O 1.42690 * 110.61543 * 298.71564 * 12 11 10 15 15 C 1.43075 * 113.87350 * 185.34736 * 14 12 11 16 16 C 1.53232 * 109.44363 * 298.34464 * 15 14 12 17 17 N 1.47169 * 108.69469 * 51.59118 * 16 15 14 18 18 C 1.36936 * 121.22723 * 129.02852 * 17 16 15 19 19 H 1.07996 * 120.00292 * 203.60552 * 18 17 16 20 20 C 1.38818 * 119.99973 * 23.60458 * 18 17 16 21 21 N 1.31618 * 119.99496 * 19.77200 * 20 18 17 22 22 Si 1.86791 * 120.00175 * 199.77246 * 20 18 17 23 23 H 1.48505 * 109.47300 * 59.99812 * 22 20 18 24 24 H 1.48500 * 109.47151 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47025 * 299.99757 * 22 20 18 26 26 C 1.47599 * 117.55144 * 309.04730 * 17 16 15 27 27 H 1.08997 * 111.16808 * 172.80872 * 26 17 16 28 28 C 1.46793 * 120.71732 * 169.17288 * 9 7 6 29 29 H 1.09002 * 109.47061 * 270.16980 * 1 2 3 30 30 H 1.08999 * 109.47251 * 30.17678 * 1 2 3 31 31 H 1.08998 * 109.46703 * 150.17691 * 1 2 3 32 32 H 1.09007 * 109.64150 * 114.88556 * 10 9 7 33 33 H 1.09000 * 109.81525 * 354.36137 * 10 9 7 34 34 H 1.08998 * 109.41622 * 185.36294 * 11 10 9 35 35 H 1.09007 * 109.41290 * 65.56503 * 11 10 9 36 36 H 1.09003 * 109.47869 * 58.33510 * 15 14 12 37 37 H 1.09005 * 109.47876 * 178.35109 * 15 14 12 38 38 H 1.09009 * 109.59938 * 291.82816 * 16 15 14 39 39 H 1.08999 * 109.60035 * 171.35885 * 16 15 14 40 40 H 0.97001 * 119.99773 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.52236 * 245.59302 * 28 9 7 42 42 H 1.08996 * 109.52303 * 5.78264 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5121 0.9981 -0.0065 5 16 3.9367 -0.5096 -0.0061 6 6 2.2812 -1.1453 0.0035 7 6 1.8395 -2.5492 0.0073 8 8 0.6664 -2.8170 0.1845 9 7 2.7348 -3.5378 -0.1856 10 6 4.1018 -3.2361 -0.6338 11 6 4.3892 -4.0539 -1.8964 12 6 4.1311 -5.5321 -1.6244 13 1 4.3227 -6.0983 -2.5358 14 8 4.9924 -6.0109 -0.5923 15 6 4.8941 -7.4197 -0.3633 16 6 3.4696 -7.7658 0.0830 17 7 2.5196 -7.1862 -0.8801 18 6 1.5306 -7.9454 -1.4462 19 1 1.0991 -7.6522 -2.3918 20 6 1.0825 -9.0920 -0.8047 21 7 1.2988 -9.2523 0.4837 22 14 0.1728 -10.4073 -1.7698 23 1 1.0489 -10.9214 -2.8531 24 1 -0.1969 -11.5217 -0.8606 25 1 -1.0574 -9.8242 -2.3629 26 6 2.6724 -5.7565 -1.2136 27 1 2.0027 -5.4676 -2.0236 28 6 2.3659 -4.9395 0.0469 29 1 -0.3633 0.0030 1.0277 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 4.8118 -3.5070 0.1477 33 1 4.1912 -2.1731 -0.8574 34 1 5.4302 -3.9156 -2.1886 35 1 3.7393 -3.7151 -2.7033 36 1 5.1265 -7.9548 -1.2841 37 1 5.5996 -7.7116 0.4147 38 1 3.2856 -7.3498 1.0737 39 1 3.3479 -8.8486 0.1103 40 1 0.9854 -10.0533 0.9321 41 1 2.9409 -5.3333 0.8849 42 1 1.3014 -5.0033 0.2724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:51 Heat of formation + Delta-G solvation = 38.095389 kcal Electronic energy + Delta-G solvation = -28285.801094 eV Core-core repulsion = 24395.181687 eV Total energy + Delta-G solvation = -3890.619407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.05634 -40.22240 -38.64669 -36.01355 -34.76263 -33.42917 -32.04041 -31.63956 -29.87226 -28.71891 -27.36179 -27.04119 -25.08639 -24.11451 -23.05199 -22.16668 -21.55462 -19.59581 -18.86263 -18.50346 -17.20531 -16.98651 -16.30918 -15.99137 -15.65943 -15.33242 -15.10765 -14.64028 -14.54441 -14.24888 -13.95692 -13.78812 -13.32234 -13.14509 -13.10702 -12.86601 -12.64295 -12.55434 -12.42514 -12.24028 -11.69883 -11.52466 -11.23345 -11.17032 -10.87042 -10.76542 -10.39759 -10.33829 -10.17884 -10.08606 -9.95775 -9.83701 -9.80389 -9.57060 -9.13108 -8.71259 -8.43306 -6.89560 -5.94338 -3.34929 -0.38554 0.65718 1.32936 1.84124 2.86407 2.97357 3.31427 3.37678 3.38421 3.76446 4.18360 4.27916 4.35327 4.47038 4.68151 4.91142 5.14295 5.15852 5.20681 5.25676 5.44190 5.47521 5.56220 5.60232 5.61699 5.81865 5.90184 5.92830 6.01954 6.04287 6.15186 6.22655 6.31096 6.43528 6.58172 6.74285 6.98205 7.36148 7.38781 7.55089 7.63424 7.77180 8.04944 8.20535 8.99931 9.62283 10.17549 11.13338 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018319 B = 0.003563 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.067561 B = 7856.520705 C = 8898.197115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.095 3.905 3 N -0.252 5.252 4 N -0.282 5.282 5 S 0.429 5.571 6 C -0.289 4.289 7 C 0.596 3.404 8 O -0.512 6.512 9 N -0.598 5.598 10 C 0.111 3.889 11 C -0.120 4.120 12 C 0.080 3.920 13 H 0.057 0.943 14 O -0.387 6.387 15 C 0.040 3.960 16 C 0.135 3.865 17 N -0.582 5.582 18 C -0.258 4.258 19 H 0.071 0.929 20 C 0.006 3.994 21 N -0.898 5.898 22 Si 0.905 3.095 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.134 3.866 27 H 0.077 0.923 28 C 0.107 3.893 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.099 0.901 40 H 0.257 0.743 41 H 0.075 0.925 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 13.370 -1.900 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 N -0.119 5.119 4 N -0.261 5.261 5 S 0.567 5.433 6 C -0.429 4.429 7 C 0.380 3.620 8 O -0.389 6.389 9 N -0.332 5.332 10 C -0.015 4.015 11 C -0.159 4.159 12 C 0.020 3.980 13 H 0.075 0.925 14 O -0.307 6.307 15 C -0.038 4.038 16 C 0.010 3.990 17 N -0.305 5.305 18 C -0.387 4.387 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.735 3.265 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.207 1.207 26 C 0.025 3.975 27 H 0.096 0.904 28 C -0.015 4.015 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.635 14.325 -1.577 16.800 hybrid contribution -1.794 -1.476 -0.457 2.367 sum 6.841 12.849 -2.034 14.698 Atomic orbital electron populations 1.20481 0.83824 1.04687 1.04379 1.22957 1.00199 0.85366 0.96587 1.70739 0.97160 1.28071 1.15895 1.78644 1.09392 1.19112 1.18938 1.82867 1.10057 0.98895 1.51488 1.27897 0.97843 1.00318 1.16870 1.16542 0.85668 0.81759 0.78001 1.90833 1.15958 1.82465 1.49609 1.48150 1.11463 1.07798 1.65786 1.21982 0.84016 0.97085 0.98380 1.21787 1.02881 0.94259 0.96936 1.22221 0.91795 0.92953 0.91010 0.92510 1.87709 1.62416 1.24130 1.56426 1.23343 1.00051 0.80616 0.99807 1.21524 0.84954 1.01244 0.91315 1.44326 1.33036 1.02174 1.50924 1.19148 1.14050 1.04529 1.01001 0.91151 1.24978 0.98807 1.00516 0.94982 1.70033 1.49206 1.27779 1.07171 0.86324 0.79623 0.81402 0.79190 1.20955 1.21532 1.20735 1.21607 0.94144 0.86259 0.95500 0.90441 1.22524 1.02718 0.75821 1.00471 0.89278 0.90032 0.88307 0.89092 0.92060 0.89711 0.90131 0.93949 0.89977 0.95300 0.88316 0.93318 0.90681 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 9.81 36.01 0.35 -0.45 16 2 C 0.10 1.23 7.00 -82.84 -0.58 0.65 16 3 N -0.25 -3.43 11.54 33.42 0.39 -3.04 16 4 N -0.28 -3.62 12.51 60.35 0.75 -2.87 16 5 S 0.43 4.49 19.45 -107.50 -2.09 2.40 16 6 C -0.29 -3.80 6.45 -35.95 -0.23 -4.03 16 7 C 0.60 9.31 7.63 -12.64 -0.10 9.21 16 8 O -0.51 -9.52 14.51 5.25 0.08 -9.45 16 9 N -0.60 -9.02 2.96 -174.14 -0.52 -9.53 16 10 C 0.11 1.30 5.53 -3.70 -0.02 1.28 16 11 C -0.12 -1.41 5.82 -26.90 -0.16 -1.57 16 12 C 0.08 1.27 2.72 -26.88 -0.07 1.19 16 13 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 14 O -0.39 -6.47 9.59 -35.23 -0.34 -6.81 16 15 C 0.04 0.69 6.97 37.28 0.26 0.95 16 16 C 0.14 2.93 4.98 -3.56 -0.02 2.92 16 17 N -0.58 -13.35 2.72 -163.86 -0.45 -13.79 16 18 C -0.26 -6.64 9.72 -15.06 -0.15 -6.79 16 19 H 0.07 1.79 7.90 -52.49 -0.41 1.38 16 20 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 21 N -0.90 -24.55 11.14 55.49 0.62 -23.93 16 22 Si 0.91 20.76 29.60 -169.99 -5.03 15.72 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.13 2.55 3.00 -67.07 -0.20 2.35 16 27 H 0.08 1.52 8.03 -51.93 -0.42 1.11 16 28 C 0.11 1.99 5.63 -3.72 -0.02 1.97 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.19 6.71 -51.93 -0.35 0.84 16 32 H 0.09 1.03 7.94 -51.93 -0.41 0.62 16 33 H 0.06 0.61 3.30 -20.48 -0.07 0.54 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.03 0.67 7.17 -51.92 -0.37 0.29 16 39 H 0.10 2.40 6.02 -51.93 -0.31 2.09 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.07 1.47 6.56 -51.93 -0.34 1.12 16 42 H 0.09 2.03 7.01 -51.93 -0.36 1.67 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -29.68 341.44 -7.60 -37.28 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.14 Total: 1.10 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.02 Total: 7.77 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.80 Total: -53.17 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.26 Total: -16.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -2.09 Total: 2.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.68 -7.60 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.377 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds