Wall clock time and date at job start Tue Mar 31 2020 21:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47065 * 2 1 4 4 N 1.31241 * 124.05398 * 270.02828 * 3 2 1 5 5 N 1.27335 * 120.04010 * 179.97438 * 4 3 2 6 6 S 1.56640 * 109.73726 * 359.69529 * 5 4 3 7 7 C 1.38238 * 124.05528 * 90.00228 * 3 2 1 8 8 C 1.47173 * 128.47926 * 0.02562 * 7 3 2 9 9 O 1.21622 * 119.99670 * 352.50862 * 8 7 3 10 10 N 1.34776 * 120.00138 * 172.51552 * 8 7 3 11 11 C 1.47049 * 120.11411 * 171.56110 * 10 8 7 12 12 C 1.53544 * 107.35402 * 130.24396 * 11 10 8 13 13 O 1.42653 * 108.38560 * 55.59434 * 12 11 10 14 14 C 1.42774 * 115.68883 * 295.54246 * 13 12 11 15 15 H 1.09001 * 112.74252 * 290.34127 * 14 13 12 16 16 C 1.55401 * 107.09019 * 166.04868 * 14 13 12 17 17 N 1.47474 * 104.78671 * 281.69019 * 16 14 13 18 18 C 1.36940 * 125.68939 * 155.63055 * 17 16 14 19 19 H 1.08000 * 120.00021 * 330.27218 * 18 17 16 20 20 C 1.38817 * 119.99644 * 150.26582 * 18 17 16 21 21 N 1.31619 * 119.99194 * 159.42085 * 20 18 17 22 22 Si 1.86796 * 120.00368 * 339.42478 * 20 18 17 23 23 H 1.48497 * 109.47175 * 84.65490 * 22 20 18 24 24 H 1.48506 * 109.46919 * 204.65529 * 22 20 18 25 25 H 1.48504 * 109.47072 * 324.65391 * 22 20 18 26 26 C 1.47213 * 108.62712 * 335.60213 * 17 16 14 27 27 C 1.45655 * 120.12075 * 351.58339 * 10 8 7 28 28 H 1.09007 * 110.55482 * 345.87440 * 27 10 8 29 29 H 1.09002 * 109.47099 * 299.99835 * 1 2 3 30 30 H 1.08999 * 109.47179 * 60.00036 * 1 2 3 31 31 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47099 * 240.00165 * 2 1 3 33 33 H 1.08999 * 109.47179 * 119.99964 * 2 1 3 34 34 H 1.09001 * 109.88295 * 10.78115 * 11 10 8 35 35 H 1.08997 * 109.93973 * 249.73577 * 11 10 8 36 36 H 1.09005 * 109.68126 * 295.86942 * 12 11 10 37 37 H 1.08997 * 109.68216 * 175.32201 * 12 11 10 38 38 H 1.08999 * 110.37200 * 40.51972 * 16 14 13 39 39 H 1.09007 * 110.37507 * 162.75272 * 16 14 13 40 40 H 0.97001 * 119.99402 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.96071 * 241.89676 * 26 17 16 42 42 H 1.08994 * 109.96628 * 120.64721 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2768 2.1139 -1.0873 5 7 2.6998 3.3116 -0.9982 6 16 2.8341 3.7144 0.5096 7 6 2.2904 2.1507 1.1453 8 6 2.1437 1.7340 2.5492 9 8 1.6218 0.6683 2.8158 10 7 2.5876 2.5335 3.5393 11 6 2.2797 2.2124 4.9409 12 6 3.5978 2.2767 5.7257 13 8 4.1798 3.5633 5.5231 14 6 4.5768 3.8590 4.1840 15 1 5.4366 3.2725 3.8601 16 6 4.8391 5.3891 4.1128 17 7 3.4983 5.9972 4.0261 18 6 3.1735 7.2725 4.4047 19 1 3.7198 7.7548 5.2018 20 6 2.1420 7.9452 3.7639 21 7 1.5577 8.9674 4.3523 22 14 1.5834 7.3998 2.0669 23 1 0.5991 6.2960 2.2008 24 1 0.9512 8.5441 1.3625 25 1 2.7559 6.9259 1.2884 26 6 2.5674 5.0049 3.4640 27 6 3.3735 3.7188 3.2249 28 1 3.7220 3.6842 2.1926 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8573 1.2097 5.0073 35 1 1.5736 2.9392 5.3423 36 1 4.2780 1.5051 5.3648 37 1 3.4009 2.1258 6.7870 38 1 5.3523 5.7284 5.0126 39 1 5.4261 5.6327 3.2272 40 1 0.8368 9.4372 3.9047 41 1 2.1599 5.3693 2.5210 42 1 1.7591 4.8116 4.1691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083135014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:16 Heat of formation + Delta-G solvation = 50.611515 kcal Electronic energy + Delta-G solvation = -28875.530603 eV Core-core repulsion = 24985.453935 eV Total energy + Delta-G solvation = -3890.076667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19452 -40.73111 -38.71455 -36.22332 -35.06941 -34.50764 -32.52033 -31.18312 -30.16492 -28.62580 -28.21761 -27.28169 -24.52225 -24.41090 -23.54011 -22.29156 -21.02236 -20.69328 -19.15524 -18.82348 -17.67589 -17.17829 -16.66872 -16.42138 -16.20820 -15.78729 -15.19898 -15.06587 -14.64745 -14.51864 -14.33317 -14.20527 -13.64556 -13.29385 -13.16933 -12.93494 -12.71885 -12.58505 -12.28665 -12.17804 -11.94354 -11.71877 -11.61800 -11.38755 -11.30409 -11.11217 -10.82394 -10.73548 -10.35367 -10.20877 -10.03367 -10.02391 -9.92350 -9.69978 -9.60853 -8.72078 -8.63011 -7.11462 -6.09852 -3.48230 -0.40814 0.67459 1.35184 1.79970 2.51840 2.70520 3.18177 3.31145 3.36768 3.70352 3.71667 4.06452 4.38315 4.39913 4.43114 4.63258 4.74827 4.88858 4.92647 4.96914 5.04255 5.11487 5.13526 5.24568 5.26954 5.33825 5.56237 5.59481 5.61046 5.72064 5.81290 5.91694 5.97776 6.06834 6.13647 6.29921 6.35591 6.40154 6.99880 7.29247 7.55191 7.61833 7.72333 8.19578 8.68871 9.52850 10.01279 11.06198 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.005818 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.959015 B = 4811.577543 C = 6176.023014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C 0.104 3.896 4 N -0.252 5.252 5 N -0.276 5.276 6 S 0.452 5.548 7 C -0.309 4.309 8 C 0.608 3.392 9 O -0.515 6.515 10 N -0.592 5.592 11 C 0.079 3.921 12 C 0.049 3.951 13 O -0.353 6.353 14 C 0.074 3.926 15 H 0.084 0.916 16 C 0.135 3.865 17 N -0.595 5.595 18 C -0.243 4.243 19 H 0.093 0.907 20 C 0.036 3.964 21 N -0.899 5.899 22 Si 0.864 3.136 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.268 1.268 26 C 0.117 3.883 27 C 0.085 3.915 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.266 0.734 41 H 0.032 0.968 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -17.512 -3.411 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.044 4.044 4 N -0.118 5.118 5 N -0.255 5.255 6 S 0.591 5.409 7 C -0.449 4.449 8 C 0.394 3.606 9 O -0.392 6.392 10 N -0.325 5.325 11 C -0.042 4.042 12 C -0.028 4.028 13 O -0.271 6.271 14 C 0.014 3.986 15 H 0.102 0.898 16 C 0.010 3.990 17 N -0.322 5.322 18 C -0.370 4.370 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.541 5.541 22 Si 0.695 3.305 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.193 1.193 26 C -0.009 4.009 27 C -0.023 4.023 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.049 0.951 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.660 -16.143 -4.274 17.096 hybrid contribution -0.989 -1.367 -0.802 1.868 sum 2.672 -17.510 -5.076 18.426 Atomic orbital electron populations 1.21667 0.93303 1.02587 1.02409 1.20242 0.96997 0.86386 1.04644 1.22988 0.96420 0.99673 0.85325 1.70763 1.13783 0.99305 1.27900 1.78640 1.17118 1.10234 1.19554 1.83774 1.45411 1.13162 0.98545 1.27763 1.16897 1.00274 0.99964 1.16480 0.78428 0.83733 0.81976 1.90776 1.44283 1.21341 1.82813 1.47471 1.53000 1.25051 1.07012 1.22543 0.99052 1.03739 0.78884 1.22939 0.92742 0.86252 1.00888 1.87968 1.79995 1.33088 1.26039 1.23746 0.93357 0.99202 0.82251 0.89796 1.21906 0.89621 0.86890 1.00604 1.44483 1.01861 1.10260 1.75637 1.18578 1.17763 0.86860 1.13838 0.88952 1.25205 0.97940 0.95801 0.97537 1.69802 1.24079 1.23008 1.37197 0.87198 0.78691 0.77000 0.87634 1.21141 1.22403 1.19317 1.21886 0.94133 0.86870 0.98039 1.22781 0.94164 0.86439 0.98918 0.89671 0.92017 0.92541 0.91293 0.89489 0.87998 0.87508 0.89403 0.92832 0.87280 0.91030 0.93597 0.92429 0.95064 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.04 -0.46 5.88 -27.88 -0.16 -0.63 16 3 C 0.10 1.46 6.25 -82.84 -0.52 0.94 16 4 N -0.25 -3.92 11.54 33.42 0.39 -3.53 16 5 N -0.28 -4.51 12.51 60.35 0.75 -3.75 16 6 S 0.45 7.11 18.15 -107.50 -1.95 5.15 16 7 C -0.31 -4.60 6.45 -35.96 -0.23 -4.83 16 8 C 0.61 9.07 7.63 -12.63 -0.10 8.98 16 9 O -0.52 -7.93 14.41 5.26 0.08 -7.86 16 10 N -0.59 -8.68 2.72 -166.02 -0.45 -9.13 16 11 C 0.08 1.00 6.40 -3.46 -0.02 0.98 16 12 C 0.05 0.57 7.02 37.44 0.26 0.83 16 13 O -0.35 -5.38 10.09 -35.23 -0.36 -5.74 16 14 C 0.07 1.09 4.13 -24.66 -0.10 0.99 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.14 2.37 6.81 -2.23 -0.02 2.35 16 17 N -0.59 -13.22 3.05 -169.98 -0.52 -13.73 16 18 C -0.24 -6.48 10.52 -15.06 -0.16 -6.64 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 20 C 0.04 0.99 5.44 -17.43 -0.09 0.90 16 21 N -0.90 -26.68 13.97 55.49 0.78 -25.90 16 22 Si 0.86 21.34 24.67 -169.99 -4.19 17.14 16 23 H -0.28 -6.83 6.75 56.52 0.38 -6.45 16 24 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.12 2.36 5.28 -3.32 -0.02 2.34 16 27 C 0.09 1.35 2.35 -67.25 -0.16 1.19 16 28 H 0.09 1.29 3.60 -21.02 -0.08 1.21 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.14 6.65 -51.93 -0.35 0.80 16 34 H 0.11 1.21 7.01 -51.93 -0.36 0.85 16 35 H 0.09 1.19 7.57 -51.93 -0.39 0.80 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.03 0.68 2.41 -51.93 -0.12 0.56 16 42 H 0.05 1.16 7.25 -51.93 -0.38 0.78 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -31.05 340.26 -6.36 -37.41 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.06 Total: -1.48 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.95 Total: 6.30 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.95 Total: -56.06 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.28 Total: -13.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.19 Total: 17.14 kcal Atomic # 16 Polarization: 7.11 SS G_CDS: -1.95 Total: 5.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.05 -6.36 -37.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083135014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.022 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds