Wall clock time and date at job start Tue Mar 31 2020 21:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47065 * 2 1 4 4 N 1.31241 * 124.05398 * 270.02828 * 3 2 1 5 5 N 1.27335 * 120.04010 * 179.97438 * 4 3 2 6 6 S 1.56640 * 109.73726 * 359.69529 * 5 4 3 7 7 C 1.38238 * 124.05528 * 90.00228 * 3 2 1 8 8 C 1.47173 * 128.47926 * 0.02562 * 7 3 2 9 9 O 1.21622 * 119.99670 * 352.50862 * 8 7 3 10 10 N 1.34776 * 120.00138 * 172.51552 * 8 7 3 11 11 C 1.47049 * 120.11411 * 171.56110 * 10 8 7 12 12 C 1.53544 * 107.35402 * 130.24396 * 11 10 8 13 13 O 1.42653 * 108.38560 * 55.59434 * 12 11 10 14 14 C 1.42774 * 115.68883 * 295.54246 * 13 12 11 15 15 H 1.09001 * 112.74252 * 290.34127 * 14 13 12 16 16 C 1.55401 * 107.09019 * 166.04868 * 14 13 12 17 17 N 1.47474 * 104.78671 * 281.69019 * 16 14 13 18 18 C 1.36940 * 125.68939 * 155.63055 * 17 16 14 19 19 H 1.08000 * 120.00021 * 330.27218 * 18 17 16 20 20 C 1.38817 * 119.99644 * 150.26582 * 18 17 16 21 21 N 1.31619 * 119.99194 * 159.42085 * 20 18 17 22 22 Si 1.86796 * 120.00368 * 339.42478 * 20 18 17 23 23 H 1.48497 * 109.47175 * 84.65490 * 22 20 18 24 24 H 1.48506 * 109.46919 * 204.65529 * 22 20 18 25 25 H 1.48504 * 109.47072 * 324.65391 * 22 20 18 26 26 C 1.47213 * 108.62712 * 335.60213 * 17 16 14 27 27 C 1.45655 * 120.12075 * 351.58339 * 10 8 7 28 28 H 1.09007 * 110.55482 * 345.87440 * 27 10 8 29 29 H 1.09002 * 109.47099 * 299.99835 * 1 2 3 30 30 H 1.08999 * 109.47179 * 60.00036 * 1 2 3 31 31 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47099 * 240.00165 * 2 1 3 33 33 H 1.08999 * 109.47179 * 119.99964 * 2 1 3 34 34 H 1.09001 * 109.88295 * 10.78115 * 11 10 8 35 35 H 1.08997 * 109.93973 * 249.73577 * 11 10 8 36 36 H 1.09005 * 109.68126 * 295.86942 * 12 11 10 37 37 H 1.08997 * 109.68216 * 175.32201 * 12 11 10 38 38 H 1.08999 * 110.37200 * 40.51972 * 16 14 13 39 39 H 1.09007 * 110.37507 * 162.75272 * 16 14 13 40 40 H 0.97001 * 119.99402 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.96071 * 241.89676 * 26 17 16 42 42 H 1.08994 * 109.96628 * 120.64721 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2768 2.1139 -1.0873 5 7 2.6998 3.3116 -0.9982 6 16 2.8341 3.7144 0.5096 7 6 2.2904 2.1507 1.1453 8 6 2.1437 1.7340 2.5492 9 8 1.6218 0.6683 2.8158 10 7 2.5876 2.5335 3.5393 11 6 2.2797 2.2124 4.9409 12 6 3.5978 2.2767 5.7257 13 8 4.1798 3.5633 5.5231 14 6 4.5768 3.8590 4.1840 15 1 5.4366 3.2725 3.8601 16 6 4.8391 5.3891 4.1128 17 7 3.4983 5.9972 4.0261 18 6 3.1735 7.2725 4.4047 19 1 3.7198 7.7548 5.2018 20 6 2.1420 7.9452 3.7639 21 7 1.5577 8.9674 4.3523 22 14 1.5834 7.3998 2.0669 23 1 0.5991 6.2960 2.2008 24 1 0.9512 8.5441 1.3625 25 1 2.7559 6.9259 1.2884 26 6 2.5674 5.0049 3.4640 27 6 3.3735 3.7188 3.2249 28 1 3.7220 3.6842 2.1926 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8573 1.2097 5.0073 35 1 1.5736 2.9392 5.3423 36 1 4.2780 1.5051 5.3648 37 1 3.4009 2.1258 6.7870 38 1 5.3523 5.7284 5.0126 39 1 5.4261 5.6327 3.2272 40 1 0.8368 9.4372 3.9047 41 1 2.1599 5.3693 2.5210 42 1 1.7591 4.8116 4.1691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083135014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:15 Heat of formation + Delta-G solvation = 28.134194 kcal Electronic energy + Delta-G solvation = -28876.505292 eV Core-core repulsion = 24985.453935 eV Total energy + Delta-G solvation = -3891.051357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35424 -41.92505 -39.93679 -37.62322 -36.26226 -35.53535 -34.37522 -32.41621 -31.47704 -29.90854 -29.62099 -28.46679 -26.23227 -25.47499 -24.52513 -23.56948 -22.39949 -22.03378 -20.31661 -19.96881 -19.22267 -18.63233 -17.94328 -17.81589 -17.35836 -17.03139 -16.48504 -16.28413 -15.93003 -15.67257 -15.59916 -15.22437 -15.18351 -14.84102 -14.49822 -14.22095 -13.93155 -13.83886 -13.61588 -13.31490 -13.26714 -13.24645 -12.92964 -12.76095 -12.49614 -12.42822 -12.13787 -11.99596 -11.89001 -11.63389 -11.41667 -11.23006 -11.15400 -11.04702 -10.84335 -10.74165 -9.82358 -8.98324 -8.24236 -5.57360 -1.58653 -0.48835 0.15939 0.65994 1.19192 1.30066 1.35120 1.40529 1.54948 2.34372 2.60406 2.62803 2.88043 3.02412 3.21767 3.31053 3.35259 3.42698 3.56254 3.93580 3.96796 4.00434 4.18451 4.27381 4.29064 4.33752 4.40314 4.45244 4.64990 4.72083 4.76408 4.84099 4.94621 4.96534 4.97401 5.06584 5.09831 5.27002 5.71952 5.81878 6.09636 6.25197 6.38866 6.55941 6.70411 7.46489 8.04737 8.95978 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011968 B = 0.005818 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.959015 B = 4811.577543 C = 6176.023014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C 0.108 3.892 4 N -0.259 5.259 5 N -0.288 5.288 6 S 0.435 5.565 7 C -0.310 4.310 8 C 0.610 3.390 9 O -0.518 6.518 10 N -0.592 5.592 11 C 0.076 3.924 12 C 0.051 3.949 13 O -0.379 6.379 14 C 0.087 3.913 15 H 0.128 0.872 16 C 0.127 3.873 17 N -0.612 5.612 18 C -0.227 4.227 19 H 0.062 0.938 20 C -0.019 4.019 21 N -0.948 5.948 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.307 1.307 25 H -0.243 1.243 26 C 0.116 3.884 27 C 0.095 3.905 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.263 0.737 41 H 0.022 0.978 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -20.906 -4.326 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.039 4.039 4 N -0.124 5.124 5 N -0.267 5.267 6 S 0.574 5.426 7 C -0.450 4.450 8 C 0.397 3.603 9 O -0.395 6.395 10 N -0.325 5.325 11 C -0.045 4.045 12 C -0.025 4.025 13 O -0.297 6.297 14 C 0.028 3.972 15 H 0.145 0.855 16 C 0.002 3.998 17 N -0.339 5.339 18 C -0.356 4.356 19 H 0.080 0.920 20 C -0.215 4.215 21 N -0.594 5.594 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.236 1.236 25 H -0.167 1.167 26 C -0.011 4.011 27 C -0.014 4.014 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.721 -19.594 -5.197 20.813 hybrid contribution -1.309 -0.399 -0.423 1.433 sum 3.411 -19.992 -5.620 21.045 Atomic orbital electron populations 1.21662 0.92740 1.03926 1.01336 1.20424 0.97297 0.84636 1.05850 1.23465 0.95275 1.00589 0.84596 1.70769 1.13903 0.99192 1.28567 1.78653 1.17638 1.10695 1.19691 1.83711 1.46042 1.14084 0.98794 1.27828 1.17185 0.99779 1.00254 1.16458 0.78228 0.83724 0.81936 1.90776 1.44369 1.21519 1.82859 1.47513 1.52828 1.24403 1.07758 1.22693 0.99754 1.04045 0.77958 1.23166 0.92057 0.85154 1.02173 1.87932 1.80380 1.35313 1.26104 1.23781 0.93976 0.97449 0.82019 0.85454 1.22151 0.87333 0.88929 1.01361 1.44527 1.04607 1.09297 1.75460 1.18481 1.16291 0.88526 1.12267 0.92014 1.25723 0.98823 0.96404 1.00545 1.69926 1.25559 1.25244 1.38654 0.86423 0.79241 0.76293 0.84027 1.20617 1.23581 1.16697 1.21845 0.93996 0.88668 0.96552 1.22602 0.93923 0.84750 1.00113 0.88445 0.93859 0.92788 0.88808 0.87318 0.87705 0.85913 0.91018 0.90576 0.85039 0.91487 0.91309 0.92802 0.96105 0.95022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.82 16 2 C -0.04 -0.79 5.88 29.85 0.18 -0.62 16 3 C 0.11 2.79 6.25 42.65 0.27 3.05 16 4 N -0.26 -7.51 11.54 -48.18 -0.56 -8.07 16 5 N -0.29 -8.91 12.51 37.02 0.46 -8.44 16 6 S 0.43 12.85 18.15 -56.49 -1.03 11.83 16 7 C -0.31 -8.52 6.45 24.62 0.16 -8.36 16 8 C 0.61 16.65 7.63 86.59 0.66 17.31 16 9 O -0.52 -14.48 14.41 -4.10 -0.06 -14.54 16 10 N -0.59 -15.88 2.72 -797.40 -2.17 -18.05 16 11 C 0.08 1.75 6.40 86.46 0.55 2.30 16 12 C 0.05 1.00 7.02 72.17 0.51 1.51 16 13 O -0.38 -10.54 10.09 -148.98 -1.50 -12.04 16 14 C 0.09 2.29 4.13 31.94 0.13 2.42 16 15 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 16 C 0.13 4.20 6.81 87.02 0.59 4.79 16 17 N -0.61 -26.94 3.05 -691.70 -2.11 -29.05 16 18 C -0.23 -12.37 10.52 84.03 0.88 -11.49 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 20 C -0.02 -1.08 5.44 84.86 0.46 -0.61 16 21 N -0.95 -58.53 13.97 21.65 0.30 -58.23 16 22 Si 0.91 44.57 24.67 68.60 1.69 46.26 16 23 H -0.28 -13.23 6.75 99.48 0.67 -12.56 16 24 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 25 H -0.24 -10.73 7.11 99.48 0.71 -10.02 16 26 C 0.12 4.57 5.28 86.46 0.46 5.03 16 27 C 0.09 2.77 2.35 45.88 0.11 2.88 16 28 H 0.10 2.68 3.60 -22.03 -0.08 2.60 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 2.00 6.65 -2.39 -0.02 1.99 16 34 H 0.12 2.43 7.01 -2.39 -0.02 2.41 16 35 H 0.07 1.88 7.57 -2.39 -0.02 1.86 16 36 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.02 0.90 2.41 -2.39 -0.01 0.89 16 42 H 0.03 1.38 7.25 -2.39 -0.02 1.36 16 Total: -1.00 -68.92 340.26 1.67 -67.26 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.96 Total: 6.67 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 5.67 Total: 16.41 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -4.07 Total: -121.85 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -1.56 Total: -26.58 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.69 Total: 46.26 kcal Atomic # 16 Polarization: 12.85 SS G_CDS: -1.03 Total: 11.83 kcal Total: -68.92 1.67 -67.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083135014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.392 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds