Wall clock time and date at job start Tue Mar 31 2020 20:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31789 * 119.08432 * 2 1 4 4 C 1.32545 * 121.01512 * 179.97438 * 3 2 1 5 5 C 1.38121 * 119.19568 * 359.74355 * 4 3 2 6 6 C 1.39627 * 118.33238 * 0.47613 * 5 4 3 7 7 N 1.38540 * 120.53206 * 179.80411 * 6 5 4 8 8 C 1.47850 * 111.00074 * 58.87440 * 7 6 5 9 9 C 1.55113 * 104.90289 * 146.24273 * 8 7 6 10 10 H 1.08999 * 110.92612 * 81.16972 * 9 8 7 11 11 O 1.42905 * 111.14344 * 205.05155 * 9 8 7 12 12 C 1.55148 * 101.56086 * 323.15665 * 9 8 7 13 13 H 1.08996 * 110.70311 * 276.96980 * 12 9 8 14 14 N 1.46500 * 110.70486 * 153.90929 * 12 9 8 15 15 C 1.34770 * 119.99680 * 157.40395 * 14 12 9 16 16 O 1.21284 * 120.00294 * 359.97438 * 15 14 12 17 17 C 1.50705 * 120.00005 * 180.02562 * 15 14 12 18 18 S 1.81004 * 109.47234 * 180.02562 * 17 15 14 19 19 C 1.76194 * 99.99738 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00441 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00052 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99969 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00388 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46986 * 270.00119 * 23 21 19 25 25 H 1.48496 * 109.47029 * 30.00135 * 23 21 19 26 26 H 1.48499 * 109.47352 * 149.99965 * 23 21 19 27 27 C 1.47449 * 111.00168 * 179.71786 * 7 6 5 28 28 N 1.31745 * 119.08453 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47452 * 270.02790 * 1 2 3 30 30 H 1.09006 * 109.47182 * 30.02414 * 1 2 3 31 31 H 1.08998 * 109.47147 * 150.01924 * 1 2 3 32 32 H 1.07993 * 120.40664 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.83812 * 180.25000 * 5 4 3 34 34 H 1.08999 * 110.37003 * 265.19316 * 8 7 6 35 35 H 1.09000 * 110.36975 * 27.42711 * 8 7 6 36 36 H 0.96703 * 113.99865 * 292.23497 * 11 9 8 37 37 H 0.96995 * 120.00081 * 337.40766 * 14 12 9 38 38 H 1.09000 * 109.47145 * 60.00045 * 17 15 14 39 39 H 1.09001 * 109.46839 * 299.99770 * 17 15 14 40 40 H 0.97005 * 119.99723 * 0.02562 * 22 21 19 41 41 H 1.08996 * 109.88724 * 117.33277 * 27 7 6 42 42 H 1.09003 * 110.01799 * 356.22222 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1517 0.0000 4 6 3.4723 1.1964 0.0005 5 6 4.1863 0.0140 0.0064 6 6 3.4768 -1.1886 0.0015 7 7 4.1469 -2.4011 0.0030 8 6 5.0221 -2.5213 1.1886 9 6 4.9947 -4.0287 1.5535 10 1 5.6827 -4.5940 0.9248 11 8 5.2870 -4.2293 2.9378 12 6 3.5215 -4.3984 1.2373 13 1 2.8713 -4.1390 2.0728 14 7 3.4028 -5.8222 0.9135 15 6 2.2176 -6.4484 1.0531 16 8 1.2494 -5.8334 1.4471 17 6 2.0956 -7.9132 0.7205 18 16 0.3934 -8.4575 1.0081 19 6 0.5335 -10.1537 0.5524 20 1 1.4827 -10.5469 0.2196 21 6 -0.5759 -10.9850 0.6222 22 7 -1.7325 -10.5062 1.0293 23 14 -0.4273 -12.7835 0.1398 24 1 -0.7161 -12.9328 -1.3092 25 1 0.9509 -13.2592 0.4213 26 1 -1.3985 -13.5882 0.9236 27 6 3.1978 -3.5295 0.0038 28 7 2.1474 -1.1513 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5135 32 1 3.9872 2.1456 0.0001 33 1 5.2663 0.0195 0.0110 34 1 6.0370 -2.2074 0.9444 35 1 4.6291 -1.9254 2.0123 36 1 6.1967 -4.0115 3.1833 37 1 4.1772 -6.3142 0.5987 38 1 2.7727 -8.4871 1.3532 39 1 2.3551 -8.0710 -0.3263 40 1 -1.8096 -9.5723 1.2801 41 1 3.3196 -4.1171 -0.9061 42 1 2.1755 -3.1571 0.0705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090373685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:03 Heat of formation + Delta-G solvation = -16.750721 kcal Electronic energy + Delta-G solvation = -26269.412548 eV Core-core repulsion = 22376.414835 eV Total energy + Delta-G solvation = -3892.997713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73913 -40.11825 -38.69126 -36.75016 -34.65828 -33.80588 -32.81816 -32.52562 -30.33055 -29.13981 -28.81633 -27.76318 -24.87573 -24.41085 -23.20659 -21.78389 -21.50378 -20.47336 -18.42925 -18.15374 -17.98184 -17.53803 -16.63472 -16.44894 -15.73800 -15.68652 -15.32707 -14.98517 -14.84123 -14.45383 -14.06080 -13.86166 -13.84473 -13.71827 -13.38579 -13.28062 -12.81151 -12.70472 -12.60355 -12.55137 -12.38641 -11.94299 -11.82129 -11.34709 -11.14591 -10.98174 -10.90903 -10.72445 -10.19102 -10.05922 -9.59672 -9.55054 -9.53840 -9.21155 -9.00836 -8.81676 -8.22289 -6.67007 -6.62166 -3.99999 0.59383 0.75538 2.76813 2.87234 2.93085 3.33103 3.39048 3.41742 3.44170 3.56177 3.59197 3.74373 3.88866 4.08248 4.15318 4.24947 4.43339 4.51894 4.73369 4.87397 4.92754 4.97450 5.03822 5.05090 5.10257 5.22467 5.24532 5.34012 5.38291 5.45235 5.55253 5.72920 5.76147 5.79065 5.98931 6.00234 6.10936 6.43372 6.51025 6.78399 7.11392 7.53371 7.84340 7.92371 8.45904 8.50297 9.27139 10.81870 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017252 B = 0.002388 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.602179 B =11724.782128 C =12924.728834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.347 3.653 3 N -0.541 5.541 4 C 0.165 3.835 5 C -0.249 4.249 6 C 0.355 3.645 7 N -0.461 5.461 8 C 0.022 3.978 9 C 0.088 3.912 10 H 0.086 0.914 11 O -0.547 6.547 12 C 0.141 3.859 13 H 0.107 0.893 14 N -0.725 5.725 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.130 4.130 18 S -0.114 6.114 19 C -0.607 4.607 20 H 0.066 0.934 21 C 0.035 3.965 22 N -0.884 5.884 23 Si 1.087 2.913 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.280 1.280 27 C 0.018 3.982 28 N -0.549 5.549 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.146 0.854 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.382 0.618 37 H 0.400 0.600 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.278 0.722 41 H 0.093 0.907 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.598 22.019 -1.622 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 N -0.258 5.258 4 C 0.001 3.999 5 C -0.274 4.274 6 C 0.114 3.886 7 N -0.180 5.180 8 C -0.104 4.104 9 C 0.027 3.973 10 H 0.103 0.897 11 O -0.351 6.351 12 C 0.034 3.966 13 H 0.125 0.875 14 N -0.379 5.379 15 C 0.319 3.681 16 O -0.385 6.385 17 C -0.281 4.281 18 S 0.112 5.888 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.176 4.176 22 N -0.519 5.519 23 Si 0.913 3.087 24 H -0.211 1.211 25 H -0.213 1.213 26 H -0.205 1.205 27 C -0.110 4.110 28 N -0.269 5.269 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.186 0.814 33 H 0.164 0.836 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.230 0.770 37 H 0.235 0.765 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.823 21.372 -1.505 26.053 hybrid contribution 3.862 0.581 -0.131 3.908 sum 18.686 21.953 -1.636 28.875 Atomic orbital electron populations 1.20637 0.85429 1.04444 1.04246 1.23168 0.98112 0.82645 0.88138 1.68313 1.10105 1.30054 1.17286 1.23058 0.89557 0.98259 0.88984 1.22304 1.02590 0.92713 1.09776 1.20184 0.88505 0.91142 0.88732 1.60438 1.19319 1.00687 1.37518 1.23811 0.98179 0.98164 0.90267 1.23201 0.96900 0.93395 0.83761 0.89652 1.86648 1.35055 1.89749 1.23657 1.21916 0.94933 0.82039 0.97697 0.87516 1.45812 1.12617 1.09200 1.70278 1.20337 0.82225 0.88953 0.76543 1.90720 1.36900 1.67124 1.43723 1.23309 1.06148 0.93803 1.04854 1.84842 1.04570 1.11396 1.88006 1.23727 1.01656 0.94287 1.55876 0.91570 1.26061 0.91381 1.06079 0.94052 1.70771 1.24953 1.17695 1.38447 0.83286 0.75573 0.73085 0.76719 1.21050 1.21310 1.20507 1.23537 0.98651 0.89903 0.98873 1.68110 1.08598 1.31155 1.19047 0.89312 0.89438 0.89258 0.81357 0.83573 0.88312 0.91058 0.77004 0.76498 0.88864 0.88850 0.90936 0.88859 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.32 36.01 0.37 -0.45 16 2 C 0.35 4.07 7.64 -157.24 -1.20 2.87 16 3 N -0.54 -5.89 10.33 -10.81 -0.11 -6.00 16 4 C 0.17 1.37 11.29 -17.29 -0.20 1.17 16 5 C -0.25 -2.07 9.47 -39.11 -0.37 -2.44 16 6 C 0.36 3.91 6.16 -154.78 -0.95 2.96 16 7 N -0.46 -4.60 5.20 -169.68 -0.88 -5.49 16 8 C 0.02 0.16 5.88 -2.18 -0.01 0.15 16 9 C 0.09 0.72 4.05 -24.48 -0.10 0.62 16 10 H 0.09 0.54 8.01 -51.93 -0.42 0.12 16 11 O -0.55 -4.69 13.48 -35.23 -0.47 -5.17 16 12 C 0.14 1.74 3.00 -66.11 -0.20 1.54 16 13 H 0.11 1.67 7.62 -51.93 -0.40 1.27 16 14 N -0.72 -9.64 5.11 -52.04 -0.27 -9.90 16 15 C 0.53 9.92 7.85 -10.99 -0.09 9.83 16 16 O -0.51 -11.60 15.55 5.55 0.09 -11.52 16 17 C -0.13 -2.62 6.16 36.01 0.22 -2.40 16 18 S -0.11 -3.09 19.60 -107.50 -2.11 -5.20 16 19 C -0.61 -17.56 9.50 30.94 0.29 -17.26 16 20 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 21 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 22 N -0.88 -27.67 13.67 55.49 0.76 -26.91 16 23 Si 1.09 25.07 29.92 -169.99 -5.09 19.99 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.02 0.22 6.52 -2.83 -0.02 0.20 16 28 N -0.55 -7.04 8.00 -9.97 -0.08 -7.12 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.15 0.80 8.02 -52.49 -0.42 0.38 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 36 H 0.38 1.29 9.12 45.56 0.42 1.71 16 37 H 0.40 4.05 8.54 -40.82 -0.35 3.70 16 38 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 40 H 0.28 8.89 7.12 -40.82 -0.29 8.60 16 41 H 0.09 1.13 8.03 -51.93 -0.42 0.72 16 42 H 0.12 1.74 5.95 -51.93 -0.31 1.43 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -38.49 370.40 -9.68 -48.16 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.75 Total: 5.85 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.34 Total: -2.28 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.58 Total: -55.42 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.39 Total: -16.69 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.99 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.49 -9.68 -48.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090373685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.412 kcal (2) G-P(sol) polarization free energy of solvation -38.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds