Wall clock time and date at job start Tue Mar 31 2020 20:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38816 * 119.99331 * 2 1 4 4 C 1.38564 * 118.03614 * 179.70203 * 3 2 1 5 5 C 1.39478 * 117.90787 * 0.28061 * 4 3 2 6 6 N 1.39051 * 120.15717 * 180.02562 * 5 4 3 7 7 C 1.47904 * 110.99525 * 59.88188 * 6 5 4 8 8 C 1.53997 * 107.05429 * 214.15461 * 7 6 5 9 9 H 1.08991 * 110.31170 * 120.13869 * 8 7 6 10 10 O 1.42900 * 110.30540 * 242.30909 * 8 7 6 11 11 C 1.54601 * 105.13910 * 1.22031 * 8 7 6 12 12 H 1.09003 * 110.72180 * 263.42033 * 11 8 7 13 13 N 1.46498 * 110.72067 * 140.31876 * 11 8 7 14 14 C 1.34778 * 119.99971 * 154.99952 * 13 11 8 15 15 O 1.21281 * 119.99875 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00467 * 179.97438 * 14 13 11 17 17 S 1.80995 * 109.47566 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00001 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00285 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00065 * 179.97438 * 18 17 16 21 21 N 1.31636 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00228 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47224 * 60.00309 * 22 20 18 24 24 H 1.48496 * 109.47238 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47118 * 300.00233 * 22 20 18 26 26 C 1.48525 * 111.00468 * 302.48109 * 6 5 4 27 27 N 1.32484 * 119.68389 * 0.02562 * 5 4 3 28 28 N 1.28351 * 122.07353 * 359.97438 * 27 5 4 29 29 H 1.09002 * 109.47315 * 89.99281 * 1 2 3 30 30 H 1.08997 * 109.47218 * 209.99562 * 1 2 3 31 31 H 1.09004 * 109.47019 * 329.99676 * 1 2 3 32 32 H 1.08002 * 120.98313 * 359.97438 * 3 2 1 33 33 H 1.08007 * 121.04218 * 180.29927 * 4 3 2 34 34 H 1.09004 * 109.91752 * 333.49729 * 7 6 5 35 35 H 1.08998 * 109.92051 * 94.60044 * 7 6 5 36 36 H 0.96704 * 113.99971 * 298.53906 * 10 8 7 37 37 H 0.96993 * 120.00300 * 334.99750 * 13 11 8 38 38 H 1.09006 * 109.46991 * 300.00856 * 16 14 13 39 39 H 1.09003 * 109.46783 * 60.00111 * 16 14 13 40 40 H 0.96994 * 119.99962 * 179.97438 * 21 20 18 41 41 H 1.09001 * 110.66718 * 278.16066 * 26 6 5 42 42 H 1.09005 * 110.66767 * 41.28124 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5857 1.1549 0.0064 5 6 4.1960 -0.0992 0.0063 6 7 5.5828 -0.2012 0.0131 7 6 6.1560 0.4480 1.2121 8 6 7.5058 1.0594 0.7928 9 1 7.4995 2.1372 0.9544 10 8 8.5733 0.4534 1.5245 11 6 7.6414 0.7435 -0.7145 12 1 8.2430 -0.1524 -0.8682 13 7 8.2181 1.8825 -1.4329 14 6 8.8777 1.6845 -2.5915 15 8 8.9933 0.5634 -3.0395 16 6 9.4705 2.8562 -3.3309 17 16 10.2838 2.2698 -4.8378 18 6 10.8703 3.8004 -5.4843 19 1 10.6777 4.7205 -4.9526 20 6 11.5797 3.8237 -6.6771 21 7 11.8148 2.7022 -7.3250 22 14 12.2008 5.4464 -7.3630 23 1 13.1233 6.0766 -6.3847 24 1 12.9223 5.2013 -8.6375 25 1 11.0500 6.3513 -7.6123 26 6 6.1743 0.5053 -1.1518 27 7 3.4482 -1.1928 -0.0002 28 7 2.1658 -1.1415 -0.0061 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6769 2.1467 -0.0004 33 1 4.1739 2.0608 0.0115 34 1 5.4868 1.2326 1.5653 35 1 6.3082 -0.2917 1.9980 36 1 8.5167 0.5813 2.4813 37 1 8.1253 2.7792 -1.0749 38 1 8.6788 3.5574 -3.5950 39 1 10.2007 3.3558 -2.6943 40 1 12.3102 2.7185 -8.1587 41 1 6.1353 -0.1219 -2.0425 42 1 5.6657 1.4537 -1.3254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090394205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:09 Heat of formation + Delta-G solvation = -2.900350 kcal Electronic energy + Delta-G solvation = -25927.657618 eV Core-core repulsion = 22035.260502 eV Total energy + Delta-G solvation = -3892.397116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78705 -40.18841 -38.68510 -36.65839 -34.68404 -34.15450 -32.76232 -32.44675 -30.43158 -29.27026 -28.30156 -27.42452 -25.49713 -24.65922 -23.83886 -21.94289 -21.45130 -20.58172 -18.23300 -18.03964 -17.86954 -17.50707 -16.53971 -16.24407 -15.80416 -15.62061 -15.22804 -15.02854 -14.82686 -14.72034 -14.32914 -14.10479 -13.88128 -13.71245 -13.31269 -13.30068 -12.96836 -12.89513 -12.68318 -12.63070 -12.42917 -11.84745 -11.61933 -11.15680 -11.06564 -11.05739 -10.79468 -10.70367 -10.61809 -10.30736 -9.90685 -9.84964 -9.49647 -9.14269 -9.06890 -8.99919 -8.26729 -6.52525 -6.23275 -3.94424 0.31011 0.38144 2.66255 2.95707 2.97612 3.06949 3.21689 3.25476 3.28236 3.56500 3.67199 3.77762 3.99388 4.10054 4.18137 4.20713 4.21026 4.31392 4.45741 4.48862 4.75609 4.85701 4.93748 4.98766 5.04089 5.08200 5.11671 5.14250 5.26883 5.32874 5.54308 5.55313 5.59743 5.69497 5.78953 5.83385 6.04353 6.08338 6.47577 6.50075 7.23668 7.54369 7.57424 8.32798 8.38283 8.50584 9.21636 10.84035 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.002178 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.386118 B =12851.697075 C =13771.748471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.062 3.938 3 C -0.106 4.106 4 C -0.147 4.147 5 C 0.239 3.761 6 N -0.463 5.463 7 C 0.014 3.986 8 C 0.092 3.908 9 H 0.074 0.926 10 O -0.546 6.546 11 C 0.154 3.846 12 H 0.123 0.877 13 N -0.731 5.731 14 C 0.534 3.466 15 O -0.507 6.507 16 C -0.153 4.153 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.034 3.966 27 N -0.211 5.211 28 N -0.231 5.231 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.380 0.620 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.105 0.895 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 2.004 21.636 29.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.179 4.179 5 C 0.001 3.999 6 N -0.187 5.187 7 C -0.113 4.113 8 C 0.031 3.969 9 H 0.092 0.908 10 O -0.351 6.351 11 C 0.047 3.953 12 H 0.141 0.859 13 N -0.386 5.386 14 C 0.321 3.679 15 O -0.380 6.380 16 C -0.304 4.304 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.094 4.094 27 N -0.053 5.053 28 N -0.074 5.074 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.228 0.772 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.888 -2.392 20.090 28.371 hybrid contribution -0.158 5.480 0.841 5.546 sum -20.046 3.088 20.931 29.146 Atomic orbital electron populations 1.20697 0.87176 1.04156 1.03886 1.23027 0.99368 0.90572 0.95327 1.22257 0.94098 1.00035 0.97184 1.22962 0.96280 1.00056 0.98573 1.21493 0.92059 0.89902 0.96407 1.61528 1.00292 1.53514 1.03346 1.23811 0.95790 0.98342 0.93403 1.22841 0.85651 0.95968 0.92407 0.90829 1.86673 1.47171 1.78490 1.22806 1.21595 0.93339 0.92517 0.87815 0.85941 1.45938 1.58468 1.09371 1.24798 1.20377 0.76836 0.90864 0.79845 1.90734 1.56781 1.24728 1.65771 1.23531 1.03618 0.99064 1.04165 1.85454 1.68272 1.12558 1.16786 1.22816 1.41439 0.93516 1.10779 0.90981 1.24999 0.95307 0.97530 0.95762 1.70006 1.38025 1.26106 1.16036 0.86219 0.78896 0.82111 0.78233 1.19930 1.20794 1.19975 1.23842 0.93985 0.97800 0.93750 1.73073 0.98750 1.26018 1.07477 1.73105 1.00717 1.24509 1.09108 0.89603 0.89741 0.90204 0.83114 0.83392 0.92402 0.88165 0.77205 0.76768 0.89193 0.89074 0.92080 0.87671 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.46 10.19 36.00 0.37 -0.10 16 2 C 0.06 0.51 6.87 -82.40 -0.57 -0.06 16 3 C -0.11 -0.69 9.86 -39.25 -0.39 -1.08 16 4 C -0.15 -1.13 7.99 -39.00 -0.31 -1.44 16 5 C 0.24 2.61 5.93 -154.77 -0.92 1.69 16 6 N -0.46 -5.03 5.36 -169.09 -0.91 -5.94 16 7 C 0.01 0.11 6.32 -2.75 -0.02 0.09 16 8 C 0.09 0.74 4.10 -25.37 -0.10 0.64 16 9 H 0.07 0.41 7.75 -51.93 -0.40 0.01 16 10 O -0.55 -4.96 13.26 -35.23 -0.47 -5.43 16 11 C 0.15 1.82 3.17 -66.07 -0.21 1.61 16 12 H 0.12 1.89 7.49 -51.93 -0.39 1.50 16 13 N -0.73 -9.05 5.18 -52.01 -0.27 -9.32 16 14 C 0.53 9.60 7.85 -10.99 -0.09 9.51 16 15 O -0.51 -11.34 15.51 5.56 0.09 -11.26 16 16 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 17 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 18 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 22 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.03 0.38 6.09 -1.91 -0.01 0.37 16 27 N -0.21 -2.83 11.54 31.23 0.36 -2.47 16 28 N -0.23 -2.77 11.42 33.61 0.38 -2.39 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 32 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 33 H 0.15 0.76 7.16 -52.48 -0.38 0.38 16 34 H 0.06 0.32 6.70 -51.93 -0.35 -0.03 16 35 H 0.10 0.76 7.97 -51.93 -0.41 0.34 16 36 H 0.38 1.53 9.11 45.56 0.41 1.94 16 37 H 0.40 3.53 8.39 -40.82 -0.34 3.19 16 38 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 39 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.06 0.55 6.67 -51.93 -0.35 0.20 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -38.42 370.65 -8.26 -46.67 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.70 Total: 1.75 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.82 Total: -4.34 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.30 Total: -45.42 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.38 Total: -16.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.42 -8.26 -46.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090394205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.773 kcal (2) G-P(sol) polarization free energy of solvation -38.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds