Wall clock time and date at job start Tue Mar 31 2020 20:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55516 * 2 1 4 4 N 1.46494 * 109.47496 * 60.12496 * 3 2 1 5 5 C 1.34773 * 120.00181 * 179.97438 * 4 3 2 6 6 O 1.21553 * 120.00137 * 0.02562 * 5 4 3 7 7 C 1.47860 * 119.99938 * 180.02562 * 5 4 3 8 8 C 1.39593 * 120.13529 * 359.72320 * 7 5 4 9 9 C 1.37945 * 119.87334 * 179.76625 * 8 7 5 10 10 C 1.38355 * 120.16242 * 0.51348 * 9 8 7 11 11 C 1.38447 * 120.27840 * 359.74154 * 10 9 8 12 12 Cl 1.73604 * 119.93977 * 180.02562 * 11 10 9 13 13 C 1.38099 * 120.12017 * 359.97438 * 11 10 9 14 14 C 1.53292 * 109.51360 * 239.87256 * 2 1 3 15 15 N 1.47233 * 108.40299 * 292.38347 * 14 2 1 16 16 C 1.36938 * 121.03150 * 129.45891 * 15 14 2 17 17 H 1.07995 * 120.00241 * 206.17702 * 16 15 14 18 18 C 1.38816 * 119.99718 * 26.17954 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.89599 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.89669 * 18 16 15 21 21 H 1.48504 * 109.46919 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47372 * 119.99555 * 20 18 16 23 23 H 1.48500 * 109.47051 * 240.00016 * 20 18 16 24 24 C 1.47151 * 117.98790 * 309.48233 * 15 14 2 25 25 C 1.53300 * 108.41429 * 50.51917 * 24 15 14 26 26 O 1.42962 * 109.22183 * 307.68047 * 25 24 15 27 27 H 1.09005 * 109.47000 * 299.87605 * 1 2 3 28 28 H 1.09000 * 109.46959 * 59.86855 * 1 2 3 29 29 H 1.09000 * 109.47652 * 179.87596 * 1 2 3 30 30 H 1.09004 * 109.47099 * 180.13226 * 3 2 1 31 31 H 1.09002 * 109.47319 * 300.12419 * 3 2 1 32 32 H 0.97006 * 119.99601 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.06156 * 0.02562 * 8 7 5 34 34 H 1.08001 * 119.91722 * 180.23302 * 9 8 7 35 35 H 1.07999 * 119.86096 * 179.76494 * 10 9 8 36 36 H 1.07997 * 120.07936 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.68446 * 52.09853 * 14 2 1 38 38 H 1.08991 * 109.68807 * 172.65669 * 14 2 1 39 39 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.67883 * 290.77953 * 24 15 14 41 41 H 1.08994 * 109.68171 * 170.26092 * 24 15 14 42 42 H 1.09004 * 109.51066 * 67.60375 * 25 24 15 43 43 H 1.09001 * 109.51236 * 187.70563 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 7 1.5573 2.1322 1.1976 5 6 1.8856 3.4218 1.4114 6 8 2.5837 4.0120 0.6102 7 6 1.3968 4.1185 2.6204 8 6 0.5902 3.4450 3.5394 9 6 0.1411 4.0988 4.6680 10 6 0.4794 5.4227 4.8854 11 6 1.2746 6.0984 3.9756 12 17 1.6942 7.7592 4.2575 13 6 1.7354 5.4534 2.8448 14 6 2.0420 -0.7252 -1.2497 15 7 1.6958 -2.1516 -1.1339 16 6 1.0611 -2.8090 -2.1538 17 1 0.4490 -3.6729 -1.9411 18 6 1.2046 -2.3649 -3.4612 19 7 2.1854 -1.5449 -3.7739 20 14 0.0055 -2.9313 -4.7769 21 1 -0.9978 -3.8440 -4.1723 22 1 -0.6845 -1.7520 -5.3585 23 1 0.7460 -3.6486 -5.8457 24 6 2.0521 -2.8498 0.1114 25 6 1.5396 -2.0210 1.2949 26 8 2.0075 -0.6763 1.1655 27 1 -0.3633 0.5119 0.8911 28 1 -0.3633 0.5159 -0.8888 29 1 -0.3634 -1.0276 -0.0022 30 1 3.1321 1.4401 -0.0024 31 1 1.6777 1.9568 -0.8889 32 1 1.0005 1.6611 1.8371 33 1 0.3218 2.4129 3.3692 34 1 -0.4799 3.5774 5.3814 35 1 0.1219 5.9309 5.7688 36 1 2.3560 5.9811 2.1357 37 1 1.5704 -0.3042 -2.1376 38 1 3.1240 -0.6149 -1.3208 39 1 2.2855 -1.2343 -4.6874 40 1 3.1351 -2.9532 0.1773 41 1 1.5876 -3.8357 0.1253 42 1 0.4496 -2.0283 1.2996 43 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108360884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:50 Heat of formation + Delta-G solvation = -52.809440 kcal Electronic energy + Delta-G solvation = -27036.952981 eV Core-core repulsion = 23108.055187 eV Total energy + Delta-G solvation = -3928.897794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48284 -40.55639 -39.39023 -37.44623 -36.58625 -35.98049 -33.51723 -33.20000 -32.18929 -31.67722 -29.56739 -28.08831 -27.43452 -25.04556 -24.75548 -23.63090 -22.84334 -21.60466 -20.37625 -19.37507 -18.87230 -17.57658 -17.30975 -17.07286 -16.81914 -16.42719 -16.19428 -15.95914 -15.93474 -15.57781 -15.26759 -15.13362 -14.77454 -14.67784 -14.50236 -14.36090 -13.95593 -13.45207 -13.17640 -12.96912 -12.90998 -12.80861 -12.58733 -12.51208 -12.48913 -12.42372 -12.11212 -12.01255 -11.94987 -11.84303 -11.25528 -11.04678 -10.75846 -10.49893 -10.32588 -10.04607 -9.83101 -8.71613 -7.89432 -5.35970 -0.32500 0.11971 1.03742 1.45313 1.47970 1.57621 1.71517 2.02022 2.48376 2.68618 2.78959 3.25226 3.48978 3.55003 3.78155 3.91434 3.96767 4.02022 4.06362 4.11571 4.27953 4.43194 4.45826 4.49816 4.56840 4.64884 4.72679 4.79228 4.80182 4.97314 5.04818 5.08874 5.12963 5.16744 5.21525 5.23540 5.28650 5.37405 5.54385 5.62513 5.65438 6.29617 6.37260 6.44725 7.07183 7.09606 7.76781 8.30622 9.16360 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.002393 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.103034 B =11696.755939 C =12245.361124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 C 0.148 3.852 4 N -0.695 5.695 5 C 0.552 3.448 6 O -0.583 6.583 7 C -0.135 4.135 8 C -0.076 4.076 9 C -0.101 4.101 10 C -0.079 4.079 11 C -0.053 4.053 12 Cl -0.066 7.066 13 C -0.070 4.070 14 C 0.166 3.834 15 N -0.607 5.607 16 C -0.256 4.256 17 H 0.075 0.925 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.291 1.291 23 H -0.296 1.296 24 C 0.100 3.900 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.415 0.585 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.165 0.835 36 H 0.127 0.873 37 H 0.067 0.933 38 H -0.008 1.008 39 H 0.250 0.750 40 H 0.011 0.989 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 11.062 21.752 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.054 3.946 3 C 0.023 3.977 4 N -0.347 5.347 5 C 0.340 3.660 6 O -0.464 6.464 7 C -0.138 4.138 8 C -0.094 4.094 9 C -0.119 4.119 10 C -0.098 4.098 11 C -0.080 4.080 12 Cl -0.038 7.038 13 C -0.090 4.090 14 C 0.039 3.961 15 N -0.331 5.331 16 C -0.386 4.386 17 H 0.092 0.908 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.218 1.218 23 H -0.224 1.224 24 C -0.025 4.025 25 C -0.024 4.024 26 O -0.304 6.304 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.254 0.746 33 H 0.173 0.827 34 H 0.196 0.804 35 H 0.183 0.817 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.010 0.990 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.156 11.694 21.180 25.230 hybrid contribution -0.037 -0.442 -1.582 1.643 sum -7.193 11.252 19.598 23.716 Atomic orbital electron populations 1.22127 0.93735 1.03037 1.02248 1.22160 0.94766 0.90238 0.87435 1.21091 0.98917 0.89672 0.87982 1.45649 1.52941 1.11074 1.25084 1.18649 0.79687 0.81787 0.85863 1.90770 1.40078 1.67208 1.48394 1.19742 1.03224 0.94662 0.96184 1.21757 0.93776 1.00981 0.92917 1.21530 0.99459 0.93562 0.97331 1.21675 0.94550 0.95005 0.98543 1.20920 1.02604 0.87032 0.97425 1.98383 1.92563 1.16877 1.95928 1.21091 0.98070 0.93574 0.96272 1.21074 0.95396 0.84444 0.95157 1.44276 1.68630 1.05511 1.14684 1.19539 1.21103 1.11893 0.86037 0.90750 1.25787 0.98834 1.00814 0.99195 1.70186 1.31157 1.38551 1.18409 0.85239 0.78868 0.77483 0.79067 1.18640 1.21774 1.22362 1.21835 0.97002 0.96434 0.87218 1.23120 0.99232 0.81650 0.98424 1.87824 1.73307 1.26524 1.42736 0.90157 0.92665 0.91762 0.92590 0.90758 0.74565 0.82713 0.80357 0.81725 0.85487 0.91480 0.99026 0.94117 0.97111 0.90941 0.91837 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 7.92 71.98 0.57 -4.15 16 2 C 0.10 3.37 0.76 -10.70 -0.01 3.36 16 3 C 0.15 5.04 4.82 86.38 0.42 5.46 16 4 N -0.70 -18.74 5.10 -465.97 -2.38 -21.12 16 5 C 0.55 16.32 7.77 86.79 0.67 16.99 16 6 O -0.58 -22.44 16.35 -3.88 -0.06 -22.50 16 7 C -0.13 -3.00 5.87 -20.09 -0.12 -3.11 16 8 C -0.08 -1.07 9.54 22.53 0.21 -0.85 16 9 C -0.10 -0.95 10.03 22.23 0.22 -0.73 16 10 C -0.08 -0.91 9.82 22.35 0.22 -0.69 16 11 C -0.05 -0.93 6.31 22.29 0.14 -0.79 16 12 Cl -0.07 -1.13 28.95 -2.72 -0.08 -1.21 16 13 C -0.07 -1.58 9.37 22.55 0.21 -1.37 16 14 C 0.17 7.84 4.12 86.34 0.36 8.20 16 15 N -0.61 -29.12 2.57 -697.35 -1.79 -30.92 16 16 C -0.26 -13.41 9.65 84.03 0.81 -12.60 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 19 N -0.94 -54.88 11.14 21.65 0.24 -54.64 16 20 Si 0.97 43.73 29.59 68.60 2.03 45.76 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 24 C 0.10 3.90 6.73 86.36 0.58 4.48 16 25 C 0.05 1.58 6.60 72.08 0.48 2.05 16 26 O -0.38 -12.72 9.97 -148.98 -1.49 -14.21 16 27 H 0.08 1.82 6.88 -2.38 -0.02 1.81 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.06 2.14 6.11 -2.39 -0.01 2.12 16 30 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.42 8.62 5.24 -92.70 -0.49 8.13 16 33 H 0.16 1.48 6.40 -2.91 -0.02 1.46 16 34 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 35 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.13 3.26 7.65 -2.91 -0.02 3.24 16 37 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 42 H 0.06 1.75 6.25 -2.39 -0.01 1.74 16 43 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -70.66 363.05 2.22 -68.44 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.56 Total: 16.48 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 5.19 Total: 13.91 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.93 Total: -106.67 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.55 Total: -36.71 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -70.66 2.22 -68.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108360884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.629 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds