Wall clock time and date at job start Tue Mar 31 2020 20:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.51635 * 2 1 4 4 N 1.46504 * 109.46873 * 304.99629 * 3 2 1 5 5 C 1.34775 * 120.00176 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00149 * 0.02562 * 5 4 3 7 7 C 1.47850 * 119.99978 * 179.97438 * 5 4 3 8 8 C 1.39594 * 120.13796 * 180.02562 * 7 5 4 9 9 C 1.37944 * 119.88291 * 179.97438 * 8 7 5 10 10 C 1.38365 * 120.15769 * 0.25265 * 9 8 7 11 11 C 1.38448 * 120.27681 * 359.48788 * 10 9 8 12 12 Cl 1.73593 * 119.94022 * 180.27529 * 11 10 9 13 13 C 1.38105 * 120.11755 * 0.51853 * 11 10 9 14 14 C 1.53297 * 109.50770 * 120.09891 * 2 1 3 15 15 N 1.47154 * 108.38988 * 67.67478 * 14 2 1 16 16 C 1.36937 * 120.98171 * 230.51408 * 15 14 2 17 17 H 1.08000 * 120.00181 * 153.32032 * 16 15 14 18 18 C 1.38812 * 120.00043 * 333.32190 * 16 15 14 19 19 N 1.31622 * 119.99477 * 343.54718 * 18 16 15 20 20 Si 1.86788 * 120.00094 * 163.55007 * 18 16 15 21 21 H 1.48504 * 109.47293 * 89.99676 * 20 18 16 22 22 H 1.48506 * 109.47390 * 209.99717 * 20 18 16 23 23 H 1.48500 * 109.47439 * 329.99756 * 20 18 16 24 24 C 1.47148 * 118.03471 * 50.52822 * 15 14 2 25 25 C 1.53299 * 108.38589 * 309.47090 * 24 15 14 26 26 O 1.42957 * 109.26574 * 52.27784 * 25 24 15 27 27 H 1.08994 * 109.46354 * 60.00225 * 1 2 3 28 28 H 1.08998 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46766 * 300.00706 * 1 2 3 30 30 H 1.08997 * 109.47502 * 185.00184 * 3 2 1 31 31 H 1.08995 * 109.47364 * 64.99478 * 3 2 1 32 32 H 0.97009 * 119.99799 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.06069 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.92262 * 179.97438 * 9 8 7 35 35 H 1.07994 * 119.86024 * 179.75022 * 10 9 8 36 36 H 1.08002 * 120.07949 * 179.76908 * 13 11 10 37 37 H 1.09011 * 109.67727 * 187.39436 * 14 2 1 38 38 H 1.08999 * 109.68571 * 307.90559 * 14 2 1 39 39 H 0.97006 * 119.99567 * 179.97438 * 19 18 16 40 40 H 1.09005 * 109.68119 * 69.19398 * 24 15 14 41 41 H 1.08999 * 109.68402 * 189.74716 * 24 15 14 42 42 H 1.09000 * 109.51156 * 172.22486 * 25 24 15 43 43 H 1.08997 * 109.51348 * 292.32574 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 7 1.4576 2.1669 -1.1315 5 6 1.7667 3.4632 -1.3330 6 8 2.5300 4.0308 -0.5763 7 6 1.1782 4.1945 -2.4753 8 6 1.4968 5.5371 -2.6871 9 6 0.9451 6.2142 -3.7548 10 6 0.0732 5.5673 -4.6126 11 6 -0.2432 4.2345 -4.4119 12 17 -1.3325 3.4295 -5.4976 13 6 0.3025 3.5456 -3.3465 14 6 2.0420 -0.7246 1.2501 15 7 1.6970 -2.1505 1.1342 16 6 1.0626 -2.8075 2.1545 17 1 0.4442 -3.6669 1.9414 18 6 1.2143 -2.3689 3.4628 19 7 2.1964 -1.5490 3.7722 20 14 0.0249 -2.9422 4.7839 21 1 0.5386 -4.1895 5.4051 22 1 -0.1061 -1.8893 5.8230 23 1 -1.3037 -3.2039 4.1742 24 6 2.0542 -2.8495 -0.1105 25 6 1.5416 -2.0213 -1.2943 26 8 2.0076 -0.6759 -1.1657 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 3.1275 1.4426 -0.0896 31 1 1.7532 1.9297 0.9313 32 1 0.8482 1.7141 -1.7353 33 1 2.1746 6.0445 -2.0167 34 1 1.1908 7.2530 -3.9190 35 1 -0.3591 6.1032 -5.4446 36 1 0.0523 2.5069 -3.1883 37 1 3.1240 -0.6134 1.3216 38 1 1.5703 -0.3032 2.1378 39 1 2.3022 -1.2421 4.6863 40 1 3.1374 -2.9522 -0.1759 41 1 1.5900 -3.8356 -0.1239 42 1 1.9141 -2.4481 -2.2255 43 1 0.4517 -2.0301 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108360885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:56 Heat of formation + Delta-G solvation = -33.199304 kcal Electronic energy + Delta-G solvation = -27171.328319 eV Core-core repulsion = 23243.280885 eV Total energy + Delta-G solvation = -3928.047434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41822 -39.22887 -38.36377 -36.73548 -35.06774 -34.38548 -32.37126 -31.30451 -31.07129 -31.00019 -27.98637 -26.65529 -25.79851 -23.90909 -23.25292 -22.85799 -21.29545 -20.48314 -18.92929 -18.30400 -17.06062 -16.60171 -16.14039 -15.82256 -15.49595 -15.26309 -14.94151 -14.83135 -14.42545 -14.29038 -14.08285 -13.74978 -13.68818 -13.52422 -13.05086 -12.78332 -12.53775 -12.26660 -12.01482 -11.82158 -11.74561 -11.62771 -11.35923 -11.22403 -11.04496 -10.84810 -10.68948 -10.35008 -10.29166 -10.09760 -9.92542 -9.57224 -9.48467 -9.14816 -9.08288 -8.89482 -8.56527 -6.76339 -5.87318 -3.31076 0.44732 0.78921 1.73417 2.65570 3.16067 3.32209 3.39720 3.40876 3.52723 4.19956 4.34505 4.37378 4.41396 4.76578 4.80358 4.94012 5.09347 5.14442 5.31189 5.34171 5.43195 5.48913 5.62938 5.69789 5.86503 5.88238 5.90286 5.93795 5.98139 6.06498 6.10419 6.26145 6.28985 6.39973 6.51508 6.62707 6.71636 6.79363 7.03793 7.43002 7.53893 7.68304 7.84419 8.20342 8.30488 9.08076 9.71050 10.28357 11.20733 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002740 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.419789 B =10216.270501 C =10837.050956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 C 0.139 3.861 4 N -0.710 5.710 5 C 0.553 3.447 6 O -0.536 6.536 7 C -0.114 4.114 8 C -0.057 4.057 9 C -0.115 4.115 10 C -0.090 4.090 11 C -0.043 4.043 12 Cl -0.065 7.065 13 C -0.078 4.078 14 C 0.161 3.839 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.401 0.599 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.030 0.970 38 H 0.097 0.903 39 H 0.256 0.744 40 H 0.026 0.974 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 12.679 -17.413 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.015 3.985 4 N -0.362 5.362 5 C 0.339 3.661 6 O -0.414 6.414 7 C -0.118 4.118 8 C -0.076 4.076 9 C -0.133 4.133 10 C -0.109 4.109 11 C -0.069 4.069 12 Cl -0.036 7.036 13 C -0.098 4.098 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.205 1.205 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.238 0.762 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.048 0.952 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.771 13.100 -16.887 21.899 hybrid contribution -1.116 -0.850 0.499 1.489 sum -5.887 12.250 -16.388 21.290 Atomic orbital electron populations 1.22214 0.95766 1.03357 1.00650 1.22563 0.93572 0.90586 0.89675 1.21417 0.98948 0.89485 0.88629 1.45983 1.48501 1.10637 1.31057 1.18112 0.81489 0.82003 0.84466 1.90788 1.35881 1.67952 1.46819 1.20024 0.99690 0.95280 0.96765 1.21437 0.97067 0.92724 0.96414 1.21143 0.96993 1.00626 0.94535 1.21269 0.97319 0.92518 0.99809 1.20803 0.97736 0.93795 0.94593 1.98391 1.62446 1.79613 1.63148 1.21261 0.95409 1.00316 0.92790 1.21280 0.97874 0.83957 0.93485 1.43990 1.68643 1.04894 1.13884 1.19137 1.21464 1.12509 0.85306 0.91459 1.25052 0.97265 1.00040 0.97140 1.70012 1.29213 1.36751 1.18542 0.86298 0.80946 0.77955 0.81581 1.21323 1.21447 1.20455 1.21599 0.97567 0.95224 0.87334 1.23043 0.98326 0.83069 0.98784 1.87822 1.73016 1.25815 1.43732 0.94126 0.90650 0.91746 0.90488 0.89672 0.76229 0.83830 0.84268 0.84507 0.84472 0.95193 0.88541 0.93406 0.95629 0.92024 0.90148 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 7.87 37.16 0.29 -2.41 16 2 C 0.08 1.40 0.78 -90.46 -0.07 1.33 16 3 C 0.14 2.33 4.85 -4.04 -0.02 2.31 16 4 N -0.71 -10.14 5.14 -61.25 -0.32 -10.46 16 5 C 0.55 8.13 7.77 -12.33 -0.10 8.03 16 6 O -0.54 -9.62 16.35 5.33 0.09 -9.53 16 7 C -0.11 -1.33 5.87 -104.97 -0.62 -1.94 16 8 C -0.06 -0.57 9.59 -39.18 -0.38 -0.95 16 9 C -0.11 -0.86 10.03 -39.64 -0.40 -1.26 16 10 C -0.09 -0.69 9.82 -39.46 -0.39 -1.08 16 11 C -0.04 -0.39 6.31 -39.55 -0.25 -0.64 16 12 Cl -0.06 -0.57 28.95 -51.86 -1.50 -2.07 16 13 C -0.08 -0.79 9.32 -39.15 -0.36 -1.16 16 14 C 0.16 3.67 4.10 -3.53 -0.01 3.66 16 15 N -0.59 -14.16 2.57 -171.82 -0.44 -14.60 16 16 C -0.25 -6.69 9.65 -15.06 -0.15 -6.84 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 19 N -0.90 -25.37 11.14 55.49 0.62 -24.75 16 20 Si 0.90 21.05 29.58 -169.99 -5.03 16.02 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 24 C 0.11 2.21 6.74 -3.53 -0.02 2.18 16 25 C 0.05 0.77 6.60 37.31 0.25 1.02 16 26 O -0.38 -6.96 10.17 -35.23 -0.36 -7.32 16 27 H 0.04 0.56 6.58 -51.93 -0.34 0.22 16 28 H 0.07 1.38 6.12 -51.93 -0.32 1.06 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.40 5.03 5.02 -40.82 -0.21 4.82 16 33 H 0.14 1.42 7.65 -52.49 -0.40 1.01 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.27 6.40 -52.49 -0.34 0.93 16 37 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.10 2.43 6.16 -51.93 -0.32 2.11 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.79 6.26 -51.93 -0.33 0.46 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -30.51 362.80 -9.37 -39.88 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.59 Total: 5.08 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -2.31 Total: 2.29 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.14 Total: -49.82 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.27 Total: -16.85 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.51 -9.37 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108360885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.685 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds