Wall clock time and date at job start Tue Mar 31 2020 20:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.51635 * 2 1 4 4 N 1.46504 * 109.46873 * 304.99629 * 3 2 1 5 5 C 1.34775 * 120.00176 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00149 * 0.02562 * 5 4 3 7 7 C 1.47850 * 119.99978 * 179.97438 * 5 4 3 8 8 C 1.39594 * 120.13796 * 180.02562 * 7 5 4 9 9 C 1.37944 * 119.88291 * 179.97438 * 8 7 5 10 10 C 1.38365 * 120.15769 * 0.25265 * 9 8 7 11 11 C 1.38448 * 120.27681 * 359.48788 * 10 9 8 12 12 Cl 1.73593 * 119.94022 * 180.27529 * 11 10 9 13 13 C 1.38105 * 120.11755 * 0.51853 * 11 10 9 14 14 C 1.53297 * 109.50770 * 120.09891 * 2 1 3 15 15 N 1.47154 * 108.38988 * 67.67478 * 14 2 1 16 16 C 1.36937 * 120.98171 * 230.51408 * 15 14 2 17 17 H 1.08000 * 120.00181 * 153.32032 * 16 15 14 18 18 C 1.38812 * 120.00043 * 333.32190 * 16 15 14 19 19 N 1.31622 * 119.99477 * 343.54718 * 18 16 15 20 20 Si 1.86788 * 120.00094 * 163.55007 * 18 16 15 21 21 H 1.48504 * 109.47293 * 89.99676 * 20 18 16 22 22 H 1.48506 * 109.47390 * 209.99717 * 20 18 16 23 23 H 1.48500 * 109.47439 * 329.99756 * 20 18 16 24 24 C 1.47148 * 118.03471 * 50.52822 * 15 14 2 25 25 C 1.53299 * 108.38589 * 309.47090 * 24 15 14 26 26 O 1.42957 * 109.26574 * 52.27784 * 25 24 15 27 27 H 1.08994 * 109.46354 * 60.00225 * 1 2 3 28 28 H 1.08998 * 109.46882 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46766 * 300.00706 * 1 2 3 30 30 H 1.08997 * 109.47502 * 185.00184 * 3 2 1 31 31 H 1.08995 * 109.47364 * 64.99478 * 3 2 1 32 32 H 0.97009 * 119.99799 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.06069 * 0.02562 * 8 7 5 34 34 H 1.08000 * 119.92262 * 179.97438 * 9 8 7 35 35 H 1.07994 * 119.86024 * 179.75022 * 10 9 8 36 36 H 1.08002 * 120.07949 * 179.76908 * 13 11 10 37 37 H 1.09011 * 109.67727 * 187.39436 * 14 2 1 38 38 H 1.08999 * 109.68571 * 307.90559 * 14 2 1 39 39 H 0.97006 * 119.99567 * 179.97438 * 19 18 16 40 40 H 1.09005 * 109.68119 * 69.19398 * 24 15 14 41 41 H 1.08999 * 109.68402 * 189.74716 * 24 15 14 42 42 H 1.09000 * 109.51156 * 172.22486 * 25 24 15 43 43 H 1.08997 * 109.51348 * 292.32574 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 7 1.4576 2.1669 -1.1315 5 6 1.7667 3.4632 -1.3330 6 8 2.5300 4.0308 -0.5763 7 6 1.1782 4.1945 -2.4753 8 6 1.4968 5.5371 -2.6871 9 6 0.9451 6.2142 -3.7548 10 6 0.0732 5.5673 -4.6126 11 6 -0.2432 4.2345 -4.4119 12 17 -1.3325 3.4295 -5.4976 13 6 0.3025 3.5456 -3.3465 14 6 2.0420 -0.7246 1.2501 15 7 1.6970 -2.1505 1.1342 16 6 1.0626 -2.8075 2.1545 17 1 0.4442 -3.6669 1.9414 18 6 1.2143 -2.3689 3.4628 19 7 2.1964 -1.5490 3.7722 20 14 0.0249 -2.9422 4.7839 21 1 0.5386 -4.1895 5.4051 22 1 -0.1061 -1.8893 5.8230 23 1 -1.3037 -3.2039 4.1742 24 6 2.0542 -2.8495 -0.1105 25 6 1.5416 -2.0213 -1.2943 26 8 2.0076 -0.6759 -1.1657 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 3.1275 1.4426 -0.0896 31 1 1.7532 1.9297 0.9313 32 1 0.8482 1.7141 -1.7353 33 1 2.1746 6.0445 -2.0167 34 1 1.1908 7.2530 -3.9190 35 1 -0.3591 6.1032 -5.4446 36 1 0.0523 2.5069 -3.1883 37 1 3.1240 -0.6134 1.3216 38 1 1.5703 -0.3032 2.1378 39 1 2.3022 -1.2421 4.6863 40 1 3.1374 -2.9522 -0.1759 41 1 1.5900 -3.8356 -0.1239 42 1 1.9141 -2.4481 -2.2255 43 1 0.4517 -2.0301 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108360885.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:55 Heat of formation + Delta-G solvation = -51.760344 kcal Electronic energy + Delta-G solvation = -27172.133186 eV Core-core repulsion = 23243.280885 eV Total energy + Delta-G solvation = -3928.852301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49958 -40.57206 -39.39901 -37.42226 -36.59861 -36.01423 -33.57650 -33.21107 -32.07220 -31.73486 -29.58836 -28.13106 -27.44165 -25.06530 -24.80220 -23.63202 -22.81855 -21.60859 -20.38683 -19.40916 -18.87705 -17.60872 -17.34698 -17.06434 -16.82367 -16.38910 -16.19826 -15.97862 -15.93719 -15.60349 -15.33348 -15.17884 -14.88537 -14.66614 -14.48802 -14.26076 -13.94649 -13.47815 -13.20042 -12.95757 -12.91517 -12.78000 -12.57539 -12.50684 -12.49034 -12.42787 -12.17469 -12.04785 -11.96612 -11.85788 -11.25303 -11.06751 -10.76212 -10.50517 -10.34505 -10.06730 -9.82162 -8.71443 -7.89845 -5.36945 -0.32974 0.10434 1.05627 1.45742 1.47873 1.56912 1.70537 2.00314 2.48125 2.67719 2.77482 3.24905 3.47838 3.49781 3.71019 3.90460 3.99671 4.03330 4.08250 4.11840 4.25355 4.41064 4.44524 4.45458 4.54110 4.60975 4.70023 4.71884 4.76948 4.93973 5.01685 5.03706 5.10627 5.17985 5.19977 5.27313 5.28960 5.34339 5.52988 5.61589 5.63555 6.29143 6.35690 6.40862 7.05984 7.07279 7.75999 8.30233 9.15896 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.002740 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.419789 B =10216.270501 C =10837.050956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 C 0.148 3.852 4 N -0.701 5.701 5 C 0.553 3.447 6 O -0.577 6.577 7 C -0.134 4.134 8 C -0.066 4.066 9 C -0.104 4.104 10 C -0.079 4.079 11 C -0.051 4.051 12 Cl -0.061 7.061 13 C -0.080 4.080 14 C 0.169 3.831 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.102 3.898 25 C 0.052 3.948 26 O -0.386 6.386 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.412 0.588 33 H 0.138 0.862 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.143 0.857 37 H -0.007 1.007 38 H 0.068 0.932 39 H 0.250 0.750 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 13.423 -20.224 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 C 0.024 3.976 4 N -0.353 5.353 5 C 0.342 3.658 6 O -0.458 6.458 7 C -0.137 4.137 8 C -0.085 4.085 9 C -0.121 4.121 10 C -0.097 4.097 11 C -0.077 4.077 12 Cl -0.032 7.032 13 C -0.099 4.099 14 C 0.042 3.958 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.191 1.191 24 C -0.023 4.023 25 C -0.025 4.025 26 O -0.306 6.306 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.250 0.750 33 H 0.156 0.844 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.161 0.839 37 H 0.011 0.989 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.030 0.970 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.842 13.819 -19.755 25.061 hybrid contribution -0.443 -1.093 1.277 1.738 sum -7.285 12.727 -18.478 23.590 Atomic orbital electron populations 1.22121 0.93965 1.02991 1.02070 1.22202 0.94673 0.90462 0.87506 1.21088 0.98033 0.89109 0.89416 1.45794 1.48487 1.10666 1.30380 1.18621 0.80693 0.81735 0.84791 1.90762 1.37806 1.68714 1.48533 1.19769 1.01497 0.95935 0.96545 1.21568 0.97348 0.92270 0.97348 1.21470 0.95776 1.01911 0.92992 1.21657 0.96168 0.91908 1.00012 1.20921 0.97888 0.94483 0.94433 1.98395 1.62266 1.79703 1.62850 1.21275 0.95124 1.00662 0.92868 1.21036 0.95461 0.84368 0.94921 1.44245 1.68658 1.05504 1.14700 1.19488 1.21057 1.12355 0.86017 0.90902 1.25801 0.98768 1.00709 0.99217 1.70181 1.31054 1.38455 1.18476 0.85298 0.79426 0.77001 0.78856 1.21348 1.22088 1.19122 1.21815 0.97021 0.96348 0.87149 1.23118 0.99151 0.81736 0.98529 1.87834 1.73363 1.26474 1.42892 0.90635 0.91801 0.92403 0.92199 0.90598 0.74959 0.84391 0.80954 0.81706 0.83927 0.98879 0.91417 0.94055 0.96991 0.90941 0.86486 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 7.87 71.98 0.57 -4.39 16 2 C 0.09 3.39 0.78 -10.69 -0.01 3.38 16 3 C 0.15 5.14 4.85 86.38 0.42 5.56 16 4 N -0.70 -19.84 5.14 -465.98 -2.40 -22.24 16 5 C 0.55 16.37 7.77 86.79 0.67 17.05 16 6 O -0.58 -21.44 16.35 -3.86 -0.06 -21.51 16 7 C -0.13 -2.99 5.87 -20.09 -0.12 -3.11 16 8 C -0.07 -1.23 9.59 22.53 0.22 -1.01 16 9 C -0.10 -1.22 10.03 22.23 0.22 -1.00 16 10 C -0.08 -0.91 9.82 22.35 0.22 -0.69 16 11 C -0.05 -0.78 6.31 22.29 0.14 -0.64 16 12 Cl -0.06 -0.91 28.95 -2.72 -0.08 -0.99 16 13 C -0.08 -1.46 9.32 22.55 0.21 -1.25 16 14 C 0.17 8.07 4.10 86.35 0.35 8.42 16 15 N -0.61 -29.61 2.57 -697.51 -1.79 -31.40 16 16 C -0.26 -13.75 9.65 84.03 0.81 -12.94 16 17 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 18 C -0.05 -2.70 4.95 84.86 0.42 -2.28 16 19 N -0.94 -54.86 11.14 21.65 0.24 -54.62 16 20 Si 0.97 43.94 29.58 68.60 2.03 45.96 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 C 0.10 4.07 6.74 86.36 0.58 4.66 16 25 C 0.05 1.64 6.60 72.08 0.48 2.12 16 26 O -0.39 -13.52 10.17 -148.98 -1.52 -15.03 16 27 H 0.07 1.89 6.58 -2.39 -0.02 1.87 16 28 H 0.06 2.23 6.12 -2.39 -0.01 2.21 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.41 9.69 5.02 -92.70 -0.47 9.22 16 33 H 0.14 2.67 7.65 -2.91 -0.02 2.65 16 34 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.14 2.33 6.40 -2.91 -0.02 2.31 16 37 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 38 H 0.07 3.61 6.16 -2.39 -0.01 3.60 16 39 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 40 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 42 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.06 1.82 6.26 -2.39 -0.01 1.81 16 Total: -1.00 -68.67 362.80 2.19 -66.48 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.58 Total: 19.48 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.19 Total: 13.86 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.95 Total: -108.26 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.58 Total: -36.54 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -68.67 2.19 -66.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108360885.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.724 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds