Wall clock time and date at job start Tue Mar 31 2020 20:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29518 * 121.52964 * 2 1 4 4 S 1.69487 * 107.84179 * 179.97438 * 3 2 1 5 5 C 1.72020 * 96.02780 * 359.80515 * 4 3 2 6 6 C 1.37896 * 105.36030 * 0.32490 * 5 4 3 7 7 C 1.47347 * 123.08170 * 179.88845 * 6 5 4 8 8 O 1.21616 * 120.00072 * 148.11612 * 7 6 5 9 9 N 1.34783 * 120.00056 * 328.11641 * 7 6 5 10 10 C 1.47074 * 120.88056 * 174.91665 * 9 7 6 11 11 C 1.53243 * 108.51759 * 231.16338 * 10 9 7 12 12 N 1.46893 * 109.34077 * 306.16827 * 11 10 9 13 13 C 1.46901 * 111.00284 * 187.25710 * 12 11 10 14 14 C 1.50703 * 109.46613 * 299.47310 * 13 12 11 15 15 O 1.21288 * 120.00256 * 0.54708 * 14 13 12 16 16 N 1.34783 * 119.99697 * 180.55416 * 14 13 12 17 17 C 1.37095 * 120.00002 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99789 * 359.97438 * 17 16 14 19 19 C 1.38946 * 120.00016 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00061 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47429 * 89.99486 * 21 19 17 23 23 H 1.48500 * 109.47268 * 209.99765 * 21 19 17 24 24 H 1.48509 * 109.47076 * 329.99669 * 21 19 17 25 25 C 1.46896 * 111.26758 * 63.10499 * 12 11 10 26 26 C 1.47071 * 120.87908 * 354.89191 * 9 7 6 27 27 H 1.09008 * 109.47197 * 270.02051 * 1 2 3 28 28 H 1.09005 * 109.47346 * 30.02094 * 1 2 3 29 29 H 1.09005 * 109.47384 * 150.02207 * 1 2 3 30 30 H 1.07999 * 127.31271 * 180.24165 * 5 4 3 31 31 H 1.09007 * 109.62958 * 350.87200 * 10 9 7 32 32 H 1.08998 * 109.63074 * 111.45423 * 10 9 7 33 33 H 1.09000 * 109.49584 * 66.13437 * 11 10 9 34 34 H 1.09000 * 109.48992 * 186.20828 * 11 10 9 35 35 H 1.08996 * 109.47161 * 59.46483 * 13 12 11 36 36 H 1.09000 * 109.47184 * 179.47248 * 13 12 11 37 37 H 0.97003 * 119.99629 * 359.97438 * 16 14 13 38 38 H 0.96998 * 120.00378 * 180.02562 * 20 19 17 39 39 H 1.09005 * 109.49230 * 176.93471 * 25 12 11 40 40 H 1.09005 * 109.49392 * 56.85811 * 25 12 11 41 41 H 1.09000 * 109.63055 * 248.54548 * 26 9 7 42 42 H 1.09000 * 109.63256 * 9.13031 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1842 1.1040 0.0000 4 16 3.8310 0.7029 0.0007 5 6 3.6017 -1.0019 0.0069 6 6 2.2352 -1.1867 0.0005 7 6 1.6036 -2.5180 0.0006 8 8 0.5322 -2.6827 0.5520 9 7 2.2132 -3.5531 -0.6105 10 6 1.6570 -4.9121 -0.5283 11 6 2.7683 -5.8666 -0.0787 12 7 3.9250 -5.7219 -0.9725 13 6 4.9450 -6.7385 -0.6824 14 6 5.4226 -6.5797 0.7381 15 8 4.9518 -5.7121 1.4428 16 7 6.3730 -7.4018 1.2254 17 6 6.8079 -7.2571 2.5174 18 1 6.3892 -6.4840 3.1447 19 6 7.7881 -8.1043 3.0196 20 7 8.2979 -9.0446 2.2562 21 14 8.3802 -7.9075 4.7803 22 1 7.5464 -8.7450 5.6795 23 1 9.7981 -8.3379 4.8768 24 1 8.2667 -6.4830 5.1845 25 6 4.4927 -4.3693 -0.8946 26 6 3.4521 -3.3535 -1.3776 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 4.3657 -1.7652 0.0129 31 1 0.8426 -4.9313 0.1960 32 1 1.2871 -5.2162 -1.5075 33 1 3.0648 -5.6246 0.9420 34 1 2.4042 -6.8932 -0.1183 35 1 4.5152 -7.7317 -0.8122 36 1 5.7860 -6.6144 -1.3646 37 1 6.7493 -8.0959 0.6618 38 1 8.9819 -9.6362 2.6068 39 1 5.3793 -4.3101 -1.5260 40 1 4.7653 -4.1481 0.1374 41 1 3.2548 -3.5078 -2.4385 42 1 3.8247 -2.3422 -1.2149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112770738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:57 Heat of formation + Delta-G solvation = -19.000255 kcal Electronic energy + Delta-G solvation = -27399.807212 eV Core-core repulsion = 23506.711953 eV Total energy + Delta-G solvation = -3893.095260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88358 -40.73286 -39.40534 -38.33122 -36.20444 -35.35781 -33.43840 -33.27309 -31.66668 -30.66549 -30.13527 -27.53716 -26.00267 -24.84859 -24.75119 -22.94472 -21.36986 -20.97588 -20.36267 -19.76475 -18.94333 -18.08758 -17.76463 -17.10467 -16.64730 -16.57143 -16.29884 -16.05309 -16.00881 -15.66508 -15.60681 -15.25170 -15.14325 -14.80135 -14.41610 -14.01965 -13.63312 -13.57767 -13.33209 -13.21728 -13.08407 -12.98603 -12.75097 -12.48695 -12.45399 -12.23973 -12.14256 -12.10588 -12.04488 -11.82051 -11.39744 -11.04962 -10.97801 -10.67346 -10.00519 -9.91366 -9.68057 -9.01722 -8.48145 -5.97567 -0.70880 0.25958 0.61843 0.73917 1.33782 1.39206 1.50368 1.83997 1.97790 2.01217 2.26661 2.94378 3.18420 3.25723 3.36387 3.43549 3.83103 3.92308 4.00229 4.15513 4.21614 4.31317 4.33862 4.35202 4.47415 4.56647 4.59285 4.63284 4.64784 4.71122 4.71484 4.80898 5.10026 5.12026 5.26148 5.38323 5.40197 5.50116 5.81321 5.99775 6.01449 6.29409 6.57340 6.97368 7.10582 7.54691 8.09498 8.67072 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002927 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.513368 B = 9564.504110 C =10426.253110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.155 3.845 3 N -0.494 5.494 4 S 0.338 5.662 5 C -0.171 4.171 6 C -0.227 4.227 7 C 0.583 3.417 8 O -0.564 6.564 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.026 3.974 12 N -0.497 5.497 13 C 0.050 3.950 14 C 0.407 3.593 15 O -0.622 6.622 16 N -0.569 5.569 17 C -0.331 4.331 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.917 5.917 21 Si 0.986 3.014 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.274 1.274 25 C 0.022 3.978 26 C 0.095 3.905 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.213 0.787 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.098 0.902 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 12.673 -11.847 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.021 4.021 3 N -0.316 5.316 4 S 0.495 5.505 5 C -0.320 4.320 6 C -0.248 4.248 7 C 0.370 3.630 8 O -0.445 6.445 9 N -0.332 5.332 10 C 0.006 3.994 11 C -0.103 4.103 12 N -0.219 5.219 13 C -0.081 4.081 14 C 0.195 3.805 15 O -0.511 6.511 16 N -0.206 5.206 17 C -0.461 4.461 18 H 0.094 0.906 19 C -0.210 4.210 20 N -0.558 5.558 21 Si 0.811 3.189 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.107 4.107 26 C -0.027 4.027 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.116 0.884 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.961 15.022 -11.568 20.563 hybrid contribution 0.287 -2.308 1.806 2.944 sum -7.674 12.714 -9.762 17.772 Atomic orbital electron populations 1.20632 0.84913 1.04192 1.04308 1.21506 1.00071 0.86539 0.94001 1.76332 1.01952 1.26469 1.26875 1.83944 1.08662 0.94373 1.63555 1.27989 0.99298 1.05537 0.99192 1.20324 0.93047 0.95421 1.16050 1.17579 0.83998 0.83561 0.77870 1.90747 1.22597 1.84561 1.46594 1.48022 1.26632 1.07775 1.50765 1.21690 0.95373 0.79294 1.02996 1.22655 0.91309 1.00094 0.96254 1.62541 1.06376 1.03202 1.49798 1.22175 0.96795 0.98262 0.90901 1.22197 0.82466 0.83852 0.92029 1.90435 1.60432 1.37861 1.62343 1.42127 1.35028 1.30873 1.12553 1.19593 1.19994 1.16538 0.89999 0.90616 1.25956 0.96444 0.95109 1.03486 1.69653 1.28770 1.19199 1.38181 0.85021 0.77831 0.78427 0.77648 1.19937 1.19507 1.19926 1.22702 0.97776 0.88796 1.01382 1.22618 0.82847 1.00560 0.96714 0.89569 0.88937 0.90007 0.77019 0.90028 0.88728 0.94115 0.89331 0.87084 0.86482 0.76962 0.91283 0.87996 0.94203 0.88431 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.31 71.23 0.66 -0.99 16 2 C 0.16 3.73 6.74 43.14 0.29 4.02 16 3 N -0.49 -11.60 11.97 -51.09 -0.61 -12.21 16 4 S 0.34 6.19 23.69 -56.49 -1.34 4.86 16 5 C -0.17 -3.46 8.89 67.74 0.60 -2.86 16 6 C -0.23 -5.60 5.46 -20.72 -0.11 -5.72 16 7 C 0.58 16.81 7.14 86.64 0.62 17.43 16 8 O -0.56 -19.24 14.44 -4.08 -0.06 -19.30 16 9 N -0.60 -15.56 3.01 -821.91 -2.47 -18.04 16 10 C 0.13 3.35 6.58 86.35 0.57 3.92 16 11 C 0.03 0.77 5.14 86.39 0.44 1.21 16 12 N -0.50 -13.53 4.83 -899.82 -4.35 -17.87 16 13 C 0.05 1.49 5.83 85.56 0.50 1.99 16 14 C 0.41 17.30 7.20 87.66 0.63 17.94 16 15 O -0.62 -30.61 11.21 -3.06 -0.03 -30.64 16 16 N -0.57 -27.23 5.29 -306.98 -1.62 -28.85 16 17 C -0.33 -18.01 9.68 84.04 0.81 -17.19 16 18 H 0.08 4.43 7.16 -2.91 -0.02 4.41 16 19 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 20 N -0.92 -47.95 13.05 21.66 0.28 -47.67 16 21 Si 0.99 41.97 29.55 68.60 2.03 44.00 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.02 0.57 5.05 86.38 0.44 1.00 16 26 C 0.09 1.94 5.92 86.35 0.51 2.45 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.08 1.81 6.62 -2.38 -0.02 1.80 16 30 H 0.21 3.82 6.06 -2.91 -0.02 3.80 16 31 H 0.08 2.32 7.10 -2.38 -0.02 2.30 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 1.63 5.58 -2.39 -0.01 1.61 16 34 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 35 H 0.11 2.92 8.13 -2.39 -0.02 2.90 16 36 H 0.12 2.92 8.09 -2.39 -0.02 2.90 16 37 H 0.40 18.08 7.90 -92.71 -0.73 17.35 16 38 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 39 H 0.10 2.15 8.07 -2.38 -0.02 2.13 16 40 H 0.04 1.36 5.88 -2.38 -0.01 1.35 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 1.96 3.21 -2.39 -0.01 1.95 16 Total: -1.00 -68.38 349.60 -1.38 -69.77 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.36 Total: 32.80 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 6.43 Total: 23.17 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -8.77 Total: -124.64 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.09 Total: -49.94 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.34 Total: 4.86 kcal Total: -68.38 -1.38 -69.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112770738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds