Wall clock time and date at job start Tue Mar 31 2020 20:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37634 * 121.51557 * 2 1 4 4 C 1.36020 * 114.58538 * 180.21689 * 3 2 1 5 5 N 1.39160 * 127.28210 * 179.80190 * 4 3 2 6 6 C 1.34778 * 119.99618 * 179.70456 * 5 4 3 7 7 O 1.21390 * 120.00462 * 0.02562 * 6 5 4 8 8 C 1.49308 * 119.99961 * 179.97438 * 6 5 4 9 9 O 1.21360 * 119.99879 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99961 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00012 * 179.97438 * 10 8 6 12 12 C 1.53349 * 109.41148 * 275.12519 * 11 10 8 13 13 C 1.53196 * 109.15353 * 178.68054 * 12 11 10 14 14 N 1.46928 * 108.89135 * 54.57497 * 13 12 11 15 15 C 1.36936 * 120.63013 * 126.29699 * 14 13 12 16 16 H 1.07999 * 120.00022 * 331.83633 * 15 14 13 17 17 C 1.38813 * 120.00005 * 151.82709 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.09585 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.09475 * 17 15 14 20 20 H 1.48494 * 109.47083 * 60.00061 * 19 17 15 21 21 H 1.48500 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47024 * 300.00112 * 19 17 15 23 23 C 1.46924 * 118.73859 * 306.32337 * 14 13 12 24 24 C 1.53044 * 109.46161 * 155.00320 * 11 10 8 25 25 S 1.72053 * 105.42709 * 359.53778 * 4 3 2 26 26 N 1.30130 * 121.51530 * 179.68245 * 2 1 3 27 27 H 1.09004 * 109.47274 * 270.29069 * 1 2 3 28 28 H 1.08994 * 109.47034 * 30.29488 * 1 2 3 29 29 H 1.09000 * 109.47309 * 150.29052 * 1 2 3 30 30 H 1.07999 * 122.70628 * 0.02562 * 3 2 1 31 31 H 0.96998 * 120.00653 * 359.70688 * 5 4 3 32 32 H 0.97000 * 120.00280 * 0.02562 * 10 8 6 33 33 H 1.09001 * 109.45989 * 35.03297 * 11 10 8 34 34 H 1.08998 * 109.68701 * 58.71543 * 12 11 10 35 35 H 1.09000 * 109.47234 * 298.51610 * 12 11 10 36 36 H 1.08996 * 109.58345 * 294.72319 * 13 12 11 37 37 H 1.08994 * 109.58644 * 174.43734 * 13 12 11 38 38 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.58664 * 173.39523 * 23 14 13 40 40 H 1.08996 * 109.58580 * 293.67452 * 23 14 13 41 41 H 1.08992 * 109.49619 * 61.41925 * 24 11 10 42 42 H 1.08999 * 109.52313 * 301.33938 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2264 1.1733 0.0000 4 6 3.5766 1.0092 -0.0047 5 7 4.5470 2.0067 -0.0097 6 6 5.8535 1.6757 -0.0079 7 8 6.1838 0.5076 -0.0025 8 6 6.8947 2.7458 -0.0139 9 8 6.5646 3.9136 -0.0198 10 7 8.2012 2.4149 -0.0116 11 6 9.2228 3.4648 -0.0180 12 6 9.4859 3.9112 -1.4613 13 6 10.5306 5.0317 -1.4584 14 7 11.7257 4.5660 -0.7417 15 6 12.9604 4.6274 -1.3306 16 1 13.0494 4.5722 -2.4055 17 6 14.0977 4.7608 -0.5459 18 7 13.9917 5.1580 0.7044 19 14 15.7787 4.3766 -1.2646 20 1 16.0365 5.2673 -2.4244 21 1 16.8211 4.5958 -0.2300 22 1 15.8145 2.9605 -1.7104 23 6 11.5707 4.0326 0.6185 24 6 10.5157 2.9220 0.5954 25 16 3.8309 -0.6924 0.0045 26 7 2.1872 -1.1093 0.0061 27 1 -0.3634 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8926 -0.5093 30 1 1.7567 2.1458 0.0004 31 1 4.2832 2.9401 -0.0144 32 1 8.4651 1.4815 -0.0065 33 1 8.8728 4.3156 0.5667 34 1 8.5609 4.2774 -1.9067 35 1 9.8597 3.0668 -2.0404 36 1 10.1232 5.9097 -0.9573 37 1 10.7958 5.2866 -2.4844 38 1 14.7864 5.2509 1.2528 39 1 12.5218 3.6258 0.9620 40 1 11.2506 4.8298 1.2893 41 1 10.8795 2.0869 -0.0030 42 1 10.3218 2.5833 1.6131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117831854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:47 Heat of formation + Delta-G solvation = -6.186833 kcal Electronic energy + Delta-G solvation = -26104.201668 eV Core-core repulsion = 22211.662039 eV Total energy + Delta-G solvation = -3892.539628 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30649 -39.60426 -39.01173 -37.50225 -35.95735 -34.58819 -32.26349 -30.78619 -30.30644 -29.91001 -29.58871 -26.32469 -24.77095 -23.07990 -22.39422 -22.05802 -21.09340 -20.23636 -19.57810 -18.63675 -18.38113 -16.97382 -16.84835 -16.46427 -16.45214 -15.71123 -15.12220 -14.88233 -14.57822 -14.36252 -14.32359 -13.84209 -13.64208 -13.23092 -13.10506 -12.97079 -12.87117 -12.75252 -12.52482 -12.21399 -11.74136 -11.59377 -11.53057 -11.21723 -11.00377 -10.76941 -10.65932 -10.58786 -10.40936 -10.15431 -10.02107 -9.84345 -9.64048 -9.07570 -8.99543 -8.88873 -8.53047 -6.76885 -5.86142 -3.28841 0.20095 0.88220 1.12852 1.53501 1.94369 2.11611 2.86466 3.22700 3.35168 3.41074 3.42087 4.11939 4.35587 4.44259 4.81270 4.93171 5.01655 5.16151 5.16330 5.16980 5.28605 5.36040 5.42325 5.48275 5.67466 5.74739 5.91265 5.97783 6.15868 6.22696 6.37014 6.38458 6.42334 6.44514 6.60026 6.69195 6.86232 6.96341 7.21236 7.27591 7.53784 7.73501 7.75135 8.37672 9.13690 9.76460 10.32746 11.22904 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.038460 B = 0.001958 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.846382 B =14293.587438 C =14584.689696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.137 3.863 3 C -0.254 4.254 4 C 0.045 3.955 5 N -0.601 5.601 6 C 0.501 3.499 7 O -0.482 6.482 8 C 0.513 3.487 9 O -0.515 6.515 10 N -0.682 5.682 11 C 0.148 3.852 12 C -0.141 4.141 13 C 0.148 3.852 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.174 3.826 24 C -0.148 4.148 25 S 0.348 5.652 26 N -0.496 5.496 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.158 0.842 31 H 0.433 0.567 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.255 0.745 39 H 0.094 0.906 40 H 0.023 0.977 41 H 0.064 0.936 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.908 -8.235 0.052 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.292 4.292 4 C -0.182 4.182 5 N -0.247 5.247 6 C 0.283 3.717 7 O -0.353 6.353 8 C 0.291 3.709 9 O -0.391 6.391 10 N -0.333 5.333 11 C 0.045 3.955 12 C -0.181 4.181 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.047 3.953 24 C -0.188 4.188 25 S 0.498 5.502 26 N -0.323 5.323 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.176 0.824 31 H 0.273 0.727 32 H 0.246 0.754 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.727 -10.146 0.183 24.889 hybrid contribution -0.029 1.632 -0.303 1.660 sum -22.756 -8.514 -0.120 24.297 Atomic orbital electron populations 1.20559 0.86663 1.03858 1.03541 1.20962 0.98776 0.87654 0.96500 1.20798 0.90247 1.01725 1.16454 1.22898 0.92609 0.98762 1.03943 1.42376 1.03501 1.09827 1.69037 1.20971 0.83398 0.90256 0.77116 1.90773 1.80274 1.19255 1.44994 1.19351 0.83974 0.87943 0.79631 1.90811 1.81188 1.18485 1.48621 1.46259 1.04357 1.12456 1.70267 1.21409 0.86462 0.89335 0.98254 1.22481 0.99696 1.00998 0.94957 1.20864 0.87383 0.92802 0.96881 1.44083 1.02480 1.70816 1.14071 1.19139 0.82804 1.44885 0.91644 0.91620 1.25063 0.98243 0.99581 0.96649 1.70003 1.28506 1.48410 1.07780 0.86351 0.83719 0.78475 0.78104 1.20843 1.21607 1.20994 1.20765 0.96624 0.91532 0.86343 1.22587 0.95047 1.01851 0.99307 1.85042 1.07280 0.90995 1.66846 1.76621 1.02209 1.26284 1.27137 0.89949 0.90131 0.90287 0.82396 0.72677 0.75362 0.89284 0.92527 0.91892 0.96033 0.92311 0.93463 0.88787 0.95884 0.91737 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.26 36.00 0.37 -0.08 16 2 C 0.14 1.21 6.71 -83.54 -0.56 0.65 16 3 C -0.25 -2.08 10.00 -40.60 -0.41 -2.49 16 4 C 0.05 0.45 7.27 -15.02 -0.11 0.34 16 5 N -0.60 -5.71 5.40 -11.81 -0.06 -5.78 16 6 C 0.50 5.75 7.85 -11.65 -0.09 5.66 16 7 O -0.48 -6.15 14.22 5.46 0.08 -6.07 16 8 C 0.51 6.61 7.85 -11.65 -0.09 6.52 16 9 O -0.51 -7.64 16.14 5.49 0.09 -7.55 16 10 N -0.68 -8.94 5.07 -54.09 -0.27 -9.21 16 11 C 0.15 2.33 2.42 -67.73 -0.16 2.17 16 12 C -0.14 -2.36 5.68 -26.45 -0.15 -2.51 16 13 C 0.15 2.98 6.51 -3.71 -0.02 2.95 16 14 N -0.59 -14.11 2.99 -172.32 -0.52 -14.62 16 15 C -0.26 -6.74 9.58 -15.06 -0.14 -6.89 16 16 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 17 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 18 N -0.90 -25.33 11.20 55.49 0.62 -24.71 16 19 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 24 C -0.15 -2.53 5.55 -26.61 -0.15 -2.67 16 25 S 0.35 3.91 21.06 -107.50 -2.26 1.65 16 26 N -0.50 -5.59 12.04 32.12 0.39 -5.20 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.43 3.28 8.29 -40.82 -0.34 2.94 16 32 H 0.41 4.79 8.07 -40.82 -0.33 4.46 16 33 H 0.09 1.53 7.58 -51.93 -0.39 1.13 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -30.65 364.36 -8.67 -39.32 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.56 Total: 3.10 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.62 Total: 7.51 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.15 Total: -59.52 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.17 Total: -13.62 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -2.26 Total: 1.65 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.65 -8.67 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117831854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.130 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds