Wall clock time and date at job start Tue Mar 31 2020 20:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37634 * 121.51557 * 2 1 4 4 C 1.36020 * 114.58538 * 180.21689 * 3 2 1 5 5 N 1.39160 * 127.28210 * 179.80190 * 4 3 2 6 6 C 1.34778 * 119.99618 * 179.70456 * 5 4 3 7 7 O 1.21390 * 120.00462 * 0.02562 * 6 5 4 8 8 C 1.49308 * 119.99961 * 179.97438 * 6 5 4 9 9 O 1.21360 * 119.99879 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99961 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00012 * 179.97438 * 10 8 6 12 12 C 1.53349 * 109.41148 * 275.12519 * 11 10 8 13 13 C 1.53196 * 109.15353 * 178.68054 * 12 11 10 14 14 N 1.46928 * 108.89135 * 54.57497 * 13 12 11 15 15 C 1.36936 * 120.63013 * 126.29699 * 14 13 12 16 16 H 1.07999 * 120.00022 * 331.83633 * 15 14 13 17 17 C 1.38813 * 120.00005 * 151.82709 * 15 14 13 18 18 N 1.31618 * 120.00004 * 343.09585 * 17 15 14 19 19 Si 1.86806 * 119.99953 * 163.09475 * 17 15 14 20 20 H 1.48494 * 109.47083 * 60.00061 * 19 17 15 21 21 H 1.48500 * 109.46851 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47024 * 300.00112 * 19 17 15 23 23 C 1.46924 * 118.73859 * 306.32337 * 14 13 12 24 24 C 1.53044 * 109.46161 * 155.00320 * 11 10 8 25 25 S 1.72053 * 105.42709 * 359.53778 * 4 3 2 26 26 N 1.30130 * 121.51530 * 179.68245 * 2 1 3 27 27 H 1.09004 * 109.47274 * 270.29069 * 1 2 3 28 28 H 1.08994 * 109.47034 * 30.29488 * 1 2 3 29 29 H 1.09000 * 109.47309 * 150.29052 * 1 2 3 30 30 H 1.07999 * 122.70628 * 0.02562 * 3 2 1 31 31 H 0.96998 * 120.00653 * 359.70688 * 5 4 3 32 32 H 0.97000 * 120.00280 * 0.02562 * 10 8 6 33 33 H 1.09001 * 109.45989 * 35.03297 * 11 10 8 34 34 H 1.08998 * 109.68701 * 58.71543 * 12 11 10 35 35 H 1.09000 * 109.47234 * 298.51610 * 12 11 10 36 36 H 1.08996 * 109.58345 * 294.72319 * 13 12 11 37 37 H 1.08994 * 109.58644 * 174.43734 * 13 12 11 38 38 H 0.96996 * 119.99787 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.58664 * 173.39523 * 23 14 13 40 40 H 1.08996 * 109.58580 * 293.67452 * 23 14 13 41 41 H 1.08992 * 109.49619 * 61.41925 * 24 11 10 42 42 H 1.08999 * 109.52313 * 301.33938 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2264 1.1733 0.0000 4 6 3.5766 1.0092 -0.0047 5 7 4.5470 2.0067 -0.0097 6 6 5.8535 1.6757 -0.0079 7 8 6.1838 0.5076 -0.0025 8 6 6.8947 2.7458 -0.0139 9 8 6.5646 3.9136 -0.0198 10 7 8.2012 2.4149 -0.0116 11 6 9.2228 3.4648 -0.0180 12 6 9.4859 3.9112 -1.4613 13 6 10.5306 5.0317 -1.4584 14 7 11.7257 4.5660 -0.7417 15 6 12.9604 4.6274 -1.3306 16 1 13.0494 4.5722 -2.4055 17 6 14.0977 4.7608 -0.5459 18 7 13.9917 5.1580 0.7044 19 14 15.7787 4.3766 -1.2646 20 1 16.0365 5.2673 -2.4244 21 1 16.8211 4.5958 -0.2300 22 1 15.8145 2.9605 -1.7104 23 6 11.5707 4.0326 0.6185 24 6 10.5157 2.9220 0.5954 25 16 3.8309 -0.6924 0.0045 26 7 2.1872 -1.1093 0.0061 27 1 -0.3634 0.0052 1.0277 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8926 -0.5093 30 1 1.7567 2.1458 0.0004 31 1 4.2832 2.9401 -0.0144 32 1 8.4651 1.4815 -0.0065 33 1 8.8728 4.3156 0.5667 34 1 8.5609 4.2774 -1.9067 35 1 9.8597 3.0668 -2.0404 36 1 10.1232 5.9097 -0.9573 37 1 10.7958 5.2866 -2.4844 38 1 14.7864 5.2509 1.2528 39 1 12.5218 3.6258 0.9620 40 1 11.2506 4.8298 1.2893 41 1 10.8795 2.0869 -0.0030 42 1 10.3218 2.5833 1.6131 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117831854.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:47 Heat of formation + Delta-G solvation = -27.659156 kcal Electronic energy + Delta-G solvation = -26105.132778 eV Core-core repulsion = 22211.662039 eV Total energy + Delta-G solvation = -3893.470738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.26147 -40.55678 -39.89365 -38.94046 -36.89171 -35.96727 -33.96847 -31.89154 -31.53757 -31.21754 -30.45181 -27.62969 -26.24480 -24.16999 -23.87024 -23.27536 -22.12907 -21.34138 -20.76143 -19.69708 -19.25341 -18.64358 -17.85311 -17.38815 -17.36379 -16.99148 -16.62736 -15.94040 -15.76157 -15.39484 -15.36703 -15.17288 -15.11856 -14.76541 -14.29996 -14.14482 -13.85940 -13.51508 -13.33185 -13.23663 -13.14313 -13.01703 -12.60382 -12.56208 -12.47023 -12.28824 -12.22111 -12.05958 -11.88469 -11.63972 -11.48387 -11.33126 -10.86939 -10.55508 -10.27672 -9.76828 -9.65730 -8.70553 -7.88084 -5.33096 -0.60431 0.12775 0.24253 0.69032 1.11465 1.43138 1.49145 1.50988 1.57614 1.90624 2.28384 2.52113 3.10754 3.28820 3.66346 3.74151 3.81586 3.96152 4.13926 4.26804 4.40968 4.42714 4.43784 4.62380 4.63216 4.68353 4.81706 4.82266 4.92984 4.94721 5.01323 5.12534 5.23352 5.30050 5.30954 5.46973 5.48602 5.64999 5.71288 5.76424 6.05772 6.31922 6.39464 6.70960 7.14991 7.84745 8.36278 9.18772 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.038460 B = 0.001958 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.846382 B =14293.587438 C =14584.689696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.135 3.865 3 C -0.236 4.236 4 C 0.036 3.964 5 N -0.587 5.587 6 C 0.508 3.492 7 O -0.496 6.496 8 C 0.519 3.481 9 O -0.532 6.532 10 N -0.676 5.676 11 C 0.160 3.840 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.609 5.609 15 C -0.263 4.263 16 H 0.067 0.933 17 C -0.048 4.048 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.278 1.278 23 C 0.178 3.822 24 C -0.132 4.132 25 S 0.296 5.704 26 N -0.519 5.519 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.193 0.807 31 H 0.443 0.557 32 H 0.420 0.580 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.015 0.985 37 H 0.059 0.941 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.001 0.999 41 H 0.069 0.931 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.228 -8.534 -0.609 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C -0.274 4.274 4 C -0.191 4.191 5 N -0.235 5.235 6 C 0.289 3.711 7 O -0.368 6.368 8 C 0.299 3.701 9 O -0.409 6.409 10 N -0.328 5.328 11 C 0.057 3.943 12 C -0.167 4.167 13 C 0.018 3.982 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.085 0.915 17 C -0.244 4.244 18 N -0.579 5.579 19 Si 0.794 3.206 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.204 1.204 23 C 0.052 3.948 24 C -0.172 4.172 25 S 0.447 5.553 26 N -0.345 5.345 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.210 0.790 31 H 0.286 0.714 32 H 0.258 0.742 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.020 0.980 41 H 0.087 0.913 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.095 -10.462 -0.496 27.193 hybrid contribution 0.515 1.784 -0.104 1.860 sum -24.580 -8.678 -0.600 26.074 Atomic orbital electron populations 1.20731 0.83940 1.05087 1.04787 1.21661 1.00537 0.87232 0.94668 1.21181 0.89403 1.02968 1.13852 1.22927 0.93243 0.97782 1.05141 1.42196 1.02740 1.10314 1.68274 1.20533 0.83743 0.89424 0.77390 1.90791 1.80573 1.19534 1.45913 1.19475 0.83957 0.87965 0.78728 1.90809 1.81473 1.19361 1.49262 1.45959 1.04097 1.12277 1.70469 1.21017 0.86447 0.89571 0.97284 1.22288 0.98980 0.99728 0.95750 1.20971 0.87015 0.93883 0.96293 1.44336 1.02844 1.71515 1.14593 1.19460 0.84117 1.43862 0.91916 0.91526 1.25777 1.01426 1.00081 0.97089 1.70155 1.28895 1.49952 1.08937 0.85368 0.79623 0.78378 0.77214 1.20292 1.22149 1.20372 1.20571 0.96685 0.92228 0.85350 1.22305 0.94105 0.99799 1.00981 1.85136 1.08588 0.93036 1.68509 1.76720 1.01774 1.27487 1.28507 0.88546 0.87494 0.90486 0.78978 0.71446 0.74248 0.90384 0.91099 0.91580 0.96692 0.92286 0.94028 0.91930 0.98049 0.91263 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.26 71.23 0.73 0.11 16 2 C 0.14 2.07 6.71 42.67 0.29 2.35 16 3 C -0.24 -3.15 10.00 21.61 0.22 -2.93 16 4 C 0.04 0.65 7.27 83.01 0.60 1.25 16 5 N -0.59 -9.96 5.40 -309.61 -1.67 -11.63 16 6 C 0.51 10.83 7.85 87.22 0.68 11.52 16 7 O -0.50 -12.12 14.22 -3.37 -0.05 -12.17 16 8 C 0.52 12.44 7.85 87.22 0.68 13.12 16 9 O -0.53 -14.76 16.14 -3.28 -0.05 -14.81 16 10 N -0.68 -16.45 5.07 -443.39 -2.25 -18.70 16 11 C 0.16 4.84 2.42 45.12 0.11 4.95 16 12 C -0.13 -4.08 5.68 30.78 0.17 -3.90 16 13 C 0.14 5.78 6.51 86.36 0.56 6.34 16 14 N -0.61 -29.34 2.99 -699.11 -2.09 -31.43 16 15 C -0.26 -14.04 9.58 84.03 0.81 -13.23 16 16 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 17 C -0.05 -2.62 4.92 84.86 0.42 -2.20 16 18 N -0.93 -53.76 11.20 21.65 0.24 -53.52 16 19 Si 0.97 43.82 29.59 68.60 2.03 45.85 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.18 8.07 5.30 86.36 0.46 8.53 16 24 C -0.13 -4.40 5.55 30.67 0.17 -4.23 16 25 S 0.30 6.55 21.06 -56.49 -1.19 5.36 16 26 N -0.52 -11.18 12.04 -52.30 -0.63 -11.81 16 27 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.11 0.25 8.11 -2.39 -0.02 0.23 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.19 1.17 8.06 -2.91 -0.02 1.14 16 31 H 0.44 5.57 8.29 -92.71 -0.77 4.80 16 32 H 0.42 8.95 8.07 -92.71 -0.75 8.20 16 33 H 0.08 2.59 7.58 -2.39 -0.02 2.58 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 38 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -67.22 364.36 -0.20 -67.42 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.44 Total: 13.76 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 5.90 Total: 21.68 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -6.40 Total: -127.09 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.10 Total: -26.98 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -1.19 Total: 5.36 kcal Total: -67.22 -0.20 -67.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117831854.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.759 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds